• Disorder
  • Domain
  • PTM
  • Variation
  • Mutation
  • Interaction
  • Disease
  • Drug
  • Physicochemical
  • Function
  • Proteomics
  • Structure
  • Localization
  • Expression
  • Element
  • Methylation

LLPS-Amt-1759
AMTR_s00048p00204000

Integrated Annotations

▼ OVERVIEW


Status: Unreviewed
Protein Name: Replication protein A subunit
Gene Name: AMTR_s00048p00204000
Ensembl Gene: AMTR_s00048p00204000
Ensembl Protein: ERN15653
Organism: Amborella trichopoda
Taxa ID: 13333
LLPS Type: Others


▼ PROPERTY



——— Disorder propensity (calculated by IUPred2A)

▼ Classification


Condensates:
CondensateEvidenceOrthologs
OthersPredicted from orthologs(View)

▼ FUNCTION


Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.

▼ CROSS REFERENCE


DatabaseNucleotide IDProtein ID
EnsemblERN15653ERN15653
UniProtU5D5N3, U5D5N3_AMBTC
GeneBankKI392502ERN15653.1

▼ SEQUENCE


Protein Sequence (FASTA)
1     MEVVLTDCEV  VGNPRPYVST  NPSAPEQGSG  PSTPGSGPPM  SVQSSSMPQQ  RPLMMENPQV  60
61    GAGSYNNPRP  PSGPNINRGP  PMNVTPEPGF  RQSGSESLAR  GYNNSPSPNM  VGYNQNSMRP  120
121   QTNTFRPPMG  QQSYNQPPPM  YVNRGPIAKN  EAPTRIIPIA  ALNPYQGRWT  IKARVTAKGD  180
181   LRRYNNPRGE  GKVFSFDLLD  SEGGEIRITC  FNAVADQFYD  RLEVGKVYLV  SKGSLKPAQR  240
241   NFNHLNNEWE  IFLESTSTIE  PCMEEDPSIP  RQQFNFRPIN  EIEHMESNSM  VDLIGIVSSI  300
301   NPSATIMRKN  GTETQKRTLQ  LKDMSGRGVE  VTLWGNFCNN  EGQHLQDMCD  SGVFPVLAVK  360
361   AGRVNDFSGK  SVGTISTSQL  FINPDFPEAQ  QLREWFDRDG  KSMPFPSISR  DSYNTSRADS  420
421   RKTVAQIKDE  GLGRSEKPDW  ITVKAIISFI  KVDNFCYTAC  PLMVGDRQCN  KKVNNNGDGT  480
481   WHCDRCEQTF  PECDYRYLLQ  AQIQDHTGLT  WVTAFQESGE  ELMGISAKDL  YFLKYEEQDD  540
541   VKFADILRNV  VFNEYMFKLK  VKEEIYSDEQ  RVKSTIVKVE  KLNFSSECKY  LVEMLEKEKL  600
601   SAGGPPGVSG  VGTSMGSIHS  GGSGYSLGTN  IAGQNVKIEN  GNGVQYVKRE  SSSGGQLANM  660
661   GYNSGSNSMN  SNNMGFNSGA  ASMNSNMGFN  SGTASMNSNM  GFNNGNASMS  SNNMGFNGGN  720
721   ASLNCYKCGG  VGHNSVNCPR  NRLSNSEQSF  GGSSDQCFKC  KQSGHWAKDC  PGVGGGSYGN  780
781   TGSMGGYGMR  VNSYGGGH  798
Nucleotide CDS Sequence (FASTA)
1     ATGGAAGTCG  TCCTTACAGA  CTGCGAAGTA  GTTGGGAATC  CAAGACCTTA  TGTATCCACA  60
61    AACCCTTCTG  CTCCTGAGCA  GGGAAGTGGT  CCTTCAACGC  CTGGAAGTGG  TCCTCCCATG  120
121   TCTGTTCAGT  CATCTTCCAT  GCCTCAGCAG  AGACCCCTAA  TGATGGAAAA  CCCTCAAGTT  180
181   GGAGCTGGTT  CATATAATAA  TCCTCGACCT  CCATCAGGGC  CAAACATCAA  TAGAGGACCT  240
241   CCCATGAATG  TAACACCAGA  ACCAGGTTTT  AGGCAGTCTG  GGTCAGAGTC  ATTAGCTAGA  300
301   GGCTACAATA  ATTCACCATC  ACCCAACATG  GTTGGTTACA  ACCAAAACTC  TATGCGTCCT  360
361   CAAACGAACA  CATTCCGGCC  TCCTATGGGC  CAGCAAAGTT  ATAATCAACC  TCCCCCAATG  420
421   TATGTGAACA  GAGGGCCCAT  AGCCAAGAAT  GAAGCCCCGA  CAAGGATAAT  CCCCATTGCA  480
481   GCTCTGAATC  CTTACCAAGG  GAGATGGACT  ATTAAGGCTA  GGGTTACGGC  CAAAGGTGAT  540
541   CTTAGGCGTT  ATAACAACCC  TAGGGGGGAG  GGGAAGGTCT  TTTCCTTTGA  TCTCCTTGAT  600
601   TCAGAAGGTG  GAGAAATTCG  CATAACTTGC  TTTAATGCAG  TAGCTGACCA  GTTCTATGAC  660
661   AGGCTTGAGG  TCGGAAAGGT  GTACTTGGTA  TCGAAAGGGA  GCTTGAAGCC  AGCTCAAAGG  720
721   AACTTCAATC  ACCTCAATAA  CGAGTGGGAA  ATCTTCCTTG  AGTCCACCTC  TACAATAGAA  780
781   CCTTGCATGG  AGGAGGACCC  CTCTATTCCG  AGGCAGCAAT  TCAACTTCAG  GCCCATCAAT  840
841   GAGATAGAGC  ACATGGAGAG  CAACTCTATG  GTCGATCTGA  TAGGAATTGT  ATCATCCATT  900
901   AATCCTTCAG  CCACTATAAT  GAGAAAGAAT  GGTACTGAGA  CTCAAAAAAG  GACACTTCAA  960
961   CTCAAAGACA  TGTCAGGTCG  AGGGGTCGAG  GTGACCTTAT  GGGGAAACTT  CTGCAATAAT  1020
1021  GAAGGCCAAC  ATCTCCAAGA  TATGTGTGAT  TCTGGGGTCT  TTCCTGTATT  GGCAGTGAAG  1080
1081  GCTGGTAGGG  TGAATGATTT  TAGTGGGAAA  TCGGTGGGCA  CGATCTCTAC  AAGCCAGTTG  1140
1141  TTTATAAACC  CTGATTTCCC  TGAGGCACAA  CAGTTAAGAG  AATGGTTTGA  TAGAGATGGA  1200
1201  AAGAGCATGC  CTTTCCCCTC  TATATCCCGA  GATTCATATA  ATACATCTAG  GGCTGATAGT  1260
1261  CGAAAAACTG  TGGCCCAAAT  CAAGGATGAG  GGGCTTGGAA  GGTCGGAAAA  GCCAGATTGG  1320
1321  ATCACTGTAA  AGGCCATTAT  CTCCTTCATC  AAGGTGGATA  ACTTCTGCTA  TACTGCTTGC  1380
1381  CCCCTTATGG  TTGGGGATAG  GCAATGCAAC  AAGAAGGTGA  ACAACAATGG  CGATGGCACT  1440
1441  TGGCACTGTG  ATAGGTGTGA  GCAAACCTTC  CCTGAATGTG  ACTACAGGTA  CCTCCTTCAG  1500
1501  GCCCAAATAC  AGGACCACAC  TGGGTTAACT  TGGGTAACTG  CATTCCAAGA  GTCCGGAGAA  1560
1561  GAACTCATGG  GTATTTCCGC  AAAGGATTTA  TACTTTCTAA  AATATGAAGA  ACAAGATGAT  1620
1621  GTGAAATTTG  CAGATATACT  CAGGAATGTG  GTGTTTAATG  AGTATATGTT  CAAGCTGAAA  1680
1681  GTCAAGGAGG  AGATTTACAG  TGATGAGCAG  CGTGTTAAAT  CCACCATAGT  TAAGGTTGAA  1740
1741  AAGTTGAATT  TTTCATCGGA  GTGCAAGTAT  CTGGTTGAGA  TGTTAGAGAA  GGAGAAGCTC  1800
1801  TCAGCTGGGG  GCCCTCCTGG  TGTGTCAGGG  GTGGGAACCA  GCATGGGCAG  CATTCATTCT  1860
1861  GGTGGAAGTG  GGTATAGCCT  TGGAACTAAT  ATAGCCGGTC  AGAATGTTAA  AATTGAGAAT  1920
1921  GGCAATGGGG  TTCAGTATGT  TAAAAGGGAA  AGTAGCAGTG  GGGGTCAGTT  GGCTAACATG  1980
1981  GGATATAACA  GTGGGAGTAA  TTCTATGAAC  TCTAACAACA  TGGGTTTCAA  CAGTGGGGCT  2040
2041  GCTTCGATGA  ACTCTAACAT  GGGTTTCAAC  AGTGGAACTG  CTTCGATGAA  CTCTAACATG  2100
2101  GGTTTCAACA  ATGGGAATGC  TTCTATGAGC  TCAAACAACA  TGGGTTTCAA  CGGTGGGAAT  2160
2161  GCTTCATTGA  ATTGTTACAA  GTGTGGAGGT  GTTGGGCATA  ACTCCGTGAA  TTGCCCTAGG  2220
2221  AATAGGCTTT  CAAATTCTGA  ACAAAGTTTT  GGGGGCTCTT  CTGACCAATG  CTTCAAGTGT  2280
2281  AAGCAAAGTG  GCCACTGGGC  AAAAGACTGT  CCGGGAGTTG  GTGGGGGTTC  CTATGGGAAC  2340
2341  ACGGGCTCAA  TGGGTGGTTA  TGGAATGAGG  GTTAACAGTT  ATGGTGGTGG  TCATTGA  2397

▼ KEYWORD


ID
Family
Complete proteome
DNA replication
DNA-binding
Metal-binding
Nucleus
Reference proteome
Zinc
Zinc-finger

▼ GENE ONTOLOGY


ID
Classification
Description
Cellular Component
Nucleus
Molecular Function
DNA binding
Molecular Function
Zinc ion binding
Biological Process
DNA recombination
Biological Process
DNA repair
Biological Process
DNA replication

▼ ORTHOLOGY


DrLLPS IDOrganismIdentityE-valueScore
LLPS-Sot-0830Solanum tuberosum73.580.0 731
LLPS-Mua-0271Musa acuminata73.230.0 800
LLPS-Coc-0265Corchorus capsularis70.310.0 706
LLPS-Thc-0010Theobroma cacao69.650.0 699
LLPS-Vir-1567Vigna radiata69.50.0 704
LLPS-Viv-1323Vitis vinifera69.250.0 764
LLPS-Cus-0490Cucumis sativus69.080.0 705
LLPS-Brn-3420Brassica napus68.720.0 696
LLPS-Met-0240Medicago truncatula68.630.0 698
LLPS-Via-0324Vigna angularis68.540.0 716
LLPS-Bro-0936Brassica oleracea68.510.0 698
LLPS-Phv-1120Phaseolus vulgaris68.410.0 699
LLPS-Sol-0330Solanum lycopersicum68.220.0 708
LLPS-Nia-1582Nicotiana attenuata67.80.0 704
LLPS-Arl-1123Arabidopsis lyrata67.470.0 696
LLPS-Art-2667Arabidopsis thaliana65.910.0 706
LLPS-Mae-2184Manihot esculenta65.60.0 770
LLPS-Prp-0739Prunus persica65.460.0 726
LLPS-Gor-1320Gossypium raimondii64.610.0 719
LLPS-Php-0546Physcomitrella patens64.470.0 664
LLPS-Hea-1965Helianthus annuus63.550.0 692
LLPS-Glm-1196Glycine max63.350.0 706
LLPS-Brr-2944Brassica rapa62.840.0 671
LLPS-Org-0575Oryza glaberrima62.430.0 631
LLPS-Sem-0369Selaginella moellendorffii61.010.0 629
LLPS-Tru-0307Triticum urartu60.930.0 603
LLPS-Sei-0671Setaria italica60.750.0 645
LLPS-Sob-0913Sorghum bicolor60.450.0 607
LLPS-Zem-0194Zea mays60.040.0 602
LLPS-Orm-1141Oryza meridionalis60.00.0 634
LLPS-Orni-0152Oryza nivara60.00.0 636
LLPS-Orbr-0768Oryza brachyantha59.930.0 634
LLPS-Orr-0507Oryza rufipogon59.810.0 634
LLPS-Ors-0337Oryza sativa59.810.0 634
LLPS-Orgl-0012Oryza glumaepatula59.810.0 634
LLPS-Ori-0108Oryza indica59.810.0 634
LLPS-Tra-1124Triticum aestivum59.530.0 602
LLPS-Orp-0129Oryza punctata59.480.0 644
LLPS-Pot-1065Populus trichocarpa58.660.0 743
LLPS-Hov-1219Hordeum vulgare58.510.0 609
LLPS-Lep-0367Leersia perrieri58.410.0 621
LLPS-Brd-0627Brachypodium distachyon57.250.0 607
LLPS-Ran-0924Rattus norvegicus42.81e-50 193
LLPS-Chr-1159Chlamydomonas reinhardtii42.523e-121 395
LLPS-Anp-0087Anas platyrhynchos42.045e-50 191
LLPS-Maf-0483Macaca fascicularis40.114e-79 270
LLPS-Crn-0057Cryptococcus neoformans39.474e-99 327
LLPS-Ten-1736Tetraodon nigroviridis38.785e-106 345
LLPS-Pof-0060Poecilia formosa38.644e-102 335
LLPS-Asm-1079Astyanax mexicanus38.545e-106 345
LLPS-Mam-0979Macaca mulatta38.463e-99 327
LLPS-Paa-0243Papio anubis38.465e-99 327
LLPS-Leo-1707Lepisosteus oculatus38.381e-104 341
LLPS-Man-3192Macaca nemestrina38.242e-96 319
LLPS-Xim-0841Xiphophorus maculatus38.241e-106 346
LLPS-Nol-2708Nomascus leucogenys38.223e-101 332
LLPS-Aon-0319Aotus nancymaae38.172e-100 330
LLPS-Cap-0034Cavia porcellus38.157e-100 329
LLPS-Mal-1377Mandrillus leucophaeus38.153e-91 305
LLPS-Myl-3156Myotis lucifugus38.151e-100 331
LLPS-Pap-0418Pan paniscus38.144e-100 329
LLPS-Pat-1154Pan troglodytes38.144e-100 329
LLPS-Hos-3885Homo sapiens38.144e-100 330
LLPS-Gog-0016Gorilla gorilla38.143e-100 329
LLPS-Spr-0542Sporisorium reilianum38.111e-97 323
LLPS-Gaa-3531Gasterosteus aculeatus38.062e-102 335
LLPS-Mum-0649Mus musculus38.034e-96 320
LLPS-Bot-0263Bos taurus38.019e-100 328
LLPS-Mea-2410Mesocricetus auratus38.017e-98 323
LLPS-Ict-0468Ictidomys tridecemlineatus37.924e-86 291
LLPS-Usm-0421Ustilago maydis37.893e-97 322
LLPS-Caj-0447Callithrix jacchus37.897e-100 329
LLPS-Rhb-3846Rhinopithecus bieti37.785e-97 321
LLPS-Ova-0601Ovis aries37.781e-98 326
LLPS-Fud-1093Fukomys damarensis37.784e-95 316
LLPS-Loa-0590Loxodonta africana37.723e-96 320
LLPS-Mup-0934Mustela putorius furo37.565e-94 313
LLPS-Scm-1636Scophthalmus maximus37.538e-100 330
LLPS-Tut-1019Tursiops truncatus37.52e-94 314
LLPS-Sac-0155Saccharomyces cerevisiae37.395e-97 322
LLPS-Dio-0054Dipodomys ordii37.392e-100 330
LLPS-Trr-0291Trichoderma reesei37.361e-92 309
LLPS-Orl-0608Oryzias latipes37.347e-103 336
LLPS-Sus-1256Sus scrofa37.285e-97 321
LLPS-Eqc-0026Equus caballus37.115e-94 313
LLPS-Urm-0968Ursus maritimus37.114e-93 311
LLPS-Ora-1071Ornithorhynchus anatinus37.053e-93 311
LLPS-Sah-0553Sarcophilus harrisii37.01e-96 320
LLPS-Asg-0858Ashbya gossypii36.957e-91 307
LLPS-Fec-2495Felis catus36.883e-95 317
LLPS-Aim-0113Ailuropoda melanoleuca36.812e-91 306
LLPS-Anc-1670Anolis carolinensis36.795e-84 286
LLPS-Pes-1573Pelodiscus sinensis36.684e-98 323
LLPS-Mod-2017Monodelphis domestica36.611e-95 318
LLPS-Gag-0155Gaeumannomyces graminis36.553e-85 290
LLPS-Tar-1295Takifugu rubripes36.516e-104 339
LLPS-Fia-0204Ficedula albicollis36.351e-92 310
LLPS-Xet-0535Xenopus tropicalis36.312e-97 322
LLPS-Fus-0597Fusarium solani36.249e-91 304
LLPS-Caf-1061Canis familiaris36.226e-97 321
LLPS-Tag-0806Taeniopygia guttata36.23e-94 314
LLPS-Fuv-1140Fusarium verticillioides36.22e-91 304
LLPS-Fuo-0495Fusarium oxysporum36.144e-90 301
LLPS-Cas-0226Carlito syrichta36.117e-94 313
LLPS-Orb-0134Oryza barthii36.057e-91 305
LLPS-Dos-1028Dothistroma septosporum36.04e-88 298
LLPS-Beb-0304Beauveria bassiana35.986e-90 302
LLPS-Cii-0323Ciona intestinalis35.932e-92 308
LLPS-Orn-0158Oreochromis niloticus35.872e-103 338
LLPS-Cog-0191Colletotrichum gloeosporioides35.793e-87 295
LLPS-Scf-1687Scleropages formosus35.78e-100 330
LLPS-Cogr-0836Colletotrichum graminicola35.635e-90 302
LLPS-Trv-0330Trichoderma virens35.621e-93 312
LLPS-Dar-1129Danio rerio35.62e-102 335
LLPS-Miv-0787Microbotryum violaceum35.514e-85 289
LLPS-Orc-3239Oryctolagus cuniculus35.414e-93 311
LLPS-Meg-2212Meleagris gallopavo35.391e-96 320
LLPS-Icp-1761Ictalurus punctatus35.362e-101 332
LLPS-Cea-3759Cercocebus atys35.323e-46 171
LLPS-Scs-0400Sclerotinia sclerotiorum35.126e-81 278
LLPS-Osl-0759Ostreococcus lucimarinus35.068e-90 303
LLPS-Aso-0183Aspergillus oryzae35.045e-80 275
LLPS-Gaga-0016Gallus gallus35.033e-95 317
LLPS-Map-0347Magnaporthe poae34.982e-80 277
LLPS-Scj-0876Schizosaccharomyces japonicus34.975e-88 297
LLPS-Lac-0499Latimeria chalumnae34.929e-93 306
LLPS-Dac-1369Daucus carota34.841e-90 299
LLPS-Kop-0355Komagataella pastoris34.835e-95 316
LLPS-Drm-0278Drosophila melanogaster34.777e-86 291
LLPS-Ast-1115Aspergillus terreus34.731e-77 268
LLPS-Coo-0303Colletotrichum orbiculare34.682e-85 290
LLPS-Nef-0725Neosartorya fischeri34.531e-78 271
LLPS-Mao-0186Magnaporthe oryzae34.533e-82 281
LLPS-Zyt-0166Zymoseptoria tritici34.525e-83 285
LLPS-Asfu-0132Aspergillus fumigatus34.31e-78 270
LLPS-Ved-1377Verticillium dahliae34.279e-84 286
LLPS-Tum-0581Tuber melanosporum34.221e-85 291
LLPS-Cym-0542Cyanidioschyzon merolae34.144e-67 241
LLPS-Chs-0622Chlorocebus sabaeus34.098e-73 254
LLPS-Nec-0225Neurospora crassa34.07e-86 291
LLPS-Put-0400Puccinia triticina33.565e-77 267
LLPS-Asni-0427Aspergillus niger33.413e-76 265
LLPS-Asn-0287Aspergillus nidulans33.414e-80 275
LLPS-Mel-0017Melampsora laricipopulina33.336e-84 283
LLPS-Scc-0168Schizosaccharomyces cryophilus33.332e-84 288
LLPS-Scp-1351Schizosaccharomyces pombe33.191e-83 285
LLPS-Asc-0381Aspergillus clavatus32.917e-73 256
LLPS-Blg-0094Blumeria graminis32.449e-79 272
LLPS-Asf-0202Aspergillus flavus32.385e-59 211
LLPS-Abg-0399Absidia glauca32.147e-76 264
LLPS-Gas-0495Galdieria sulphuraria31.69e-74 259
LLPS-Yal-0248Yarrowia lipolytica31.562e-74 259
LLPS-Lem-0311Leptosphaeria maculans31.354e-72 254
LLPS-Pyt-0998Pyrenophora teres31.255e-73 256
LLPS-Chc-0201Chondrus crispus31.115e-62 226
LLPS-Pug-0164Puccinia graminis30.815e-84 286
LLPS-Phn-0638Phaeosphaeria nodorum30.481e-71 251
LLPS-Cae-0062Caenorhabditis elegans29.822e-48 186