Homo sapiens      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 125 genes.  Reviewed (115 or Unreviewed (10

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Hos-1686
ENSG00000123908.11
Q9UKV8
AGO2
2
LLPS-Hos-1012
ENSG00000197976.11
Q02040
AKAP17A
3
LLPS-Hos-2292
ENSG00000183684.7
Q86V81
ALYREF
4
LLPS-Hos-1180
ENSG00000109511.11
Q9UJ72
ANXA10
5
LLPS-Hos-0922
ENSG00000182718.16
P07355
ANXA2
6
LLPS-Hos-2715
ENSG00000182196.13
Q66PJ3
ARL6IP4
7
LLPS-Hos-1389
ENSG00000175054.14
Q13535
ATR
8
LLPS-Hos-1675
ENSG00000116752.5
O75934
BCAS2
9
LLPS-Hos-0748
ENSG00000142453.11
Q86X55
CARM1
10
LLPS-Hos-0037
ENSG00000108349.16
O15234
CASC3
11
LLPS-Hos-2508
ENSG00000163660.11
Q9UK58
CCNL1
12
LLPS-Hos-0029
ENSG00000096401.7
Q99459
CDC5L
13
LLPS-Hos-0453
ENSG00000170312.15
P06493
CDK1
14
LLPS-Hos-0677
ENSG00000134058.11
P50613
CDK7
15
LLPS-Hos-2133
ENSG00000136807.13
P50750
CDK9
16
LLPS-Hos-0507
ENSG00000008086.11
O76039
CDKL5
17
LLPS-Hos-0104
ENSG00000176444.18
P49760
CLK2
18
LLPS-Hos-1413
ENSG00000113712.17
P48729
CSNK1A1
19
LLPS-Hos-0527
ENSG00000132792.18
Q8WYA6
CTNNBL1
20
LLPS-Hos-1151
ENSG00000198563.13
Q13838
DDX39B
21
LLPS-Hos-0438
ENSG00000145833.15
Q7L014
DDX46
22
LLPS-Hos-0701
ENSG00000128191.15
Q8WYQ5
DGCR8
23
LLPS-Hos-1463
ENSG00000132002.7
P25685
DNAJB1
24
LLPS-Hos-1334
ENSG00000104129.9
Q9NVM6
DNAJC17
25
LLPS-Hos-2002
ENSG00000143479.16
O43781
DYRK3
26
LLPS-Hos-0483
ENSG00000138798.11
P01133
EGF
27
LLPS-Hos-2897
ENSG00000206181.5
Q8IYF1
ELOA2
28
LLPS-Hos-5011
ENSG00000278674.1
Q3SY89
ELOA3B
29
LLPS-Hos-0817
ENSG00000100632.10
P84090
ERH
30
LLPS-Hos-2568
ENSG00000077458.12
Q5HYJ3
FAM76B
31
LLPS-Hos-0459
ENSG00000180921.6
Q6ZRV2
FAM83H
32
LLPS-Hos-1404
ENSG00000144554.10
Q9BXW9
FANCD2
33
LLPS-Hos-1673
ENSG00000140525.17
Q9NVI1
FANCI
34
LLPS-Hos-1176
ENSG00000155034.18
Q96ME1
FBXL18
35
LLPS-Hos-2506
ENSG00000077782.20
P11362
FGFR1
36
LLPS-Hos-2539
ENSG00000126391.13
Q9BZ67
FRMD8
37
LLPS-Hos-1390
ENSG00000089280.18
P35637
FUS
38
LLPS-Hos-0173
ENSG00000122068.12
Q96QD9
FYTTD1
39
LLPS-Hos-0172
ENSG00000082701.15
P49841
GSK3B
40
LLPS-Hos-0319
ENSG00000100644.16
Q16665
HIF1A
41
LLPS-Hos-1596
ENSG00000124440.15
Q9Y2N7
HIF3A
42
LLPS-Hos-2683
ENSG00000064393.15
Q9H2X6
HIPK2
43
LLPS-Hos-2438
ENSG00000135486.17
P09651
HNRNPA1
44
LLPS-Hos-2608
ENSG00000122566.21
P22626
HNRNPA2B1
45
LLPS-Hos-1907
ENSG00000165119.20
P61978
HNRNPK
46
LLPS-Hos-4516
ENSG00000206383.8
P0DMV8
HSPA1A
47
LLPS-Hos-2883
ENSG00000173110.7
P17066
HSPA6
48
LLPS-Hos-1586
ENSG00000120694.19
Q92598
HSPH1
49
LLPS-Hos-2764
ENSG00000143621.16
Q12905
ILF2
50
LLPS-Hos-0059
ENSG00000129351.17
Q12906
ILF3
51
LLPS-Hos-2708
ENSG00000116679.15
Q9Y6Y0
IVNS1ABP
52
LLPS-Hos-5006
ENSG00000243772.7
P43628
KIR2DL3
53
LLPS-Hos-0798
ENSG00000182481.8
P52292
KPNA2
54
LLPS-Hos-0517
ENSG00000007392.16
Q9NQ29
LUC7L
55
LLPS-Hos-0788
ENSG00000146963.17
Q9Y383
LUC7L2
56
LLPS-Hos-2841
ENSG00000162385.10
P61326
MAGOH
57
LLPS-Hos-0268
ENSG00000124357.12
Q9UJ70
NAGK
58
LLPS-Hos-0571
ENSG00000101882.9
Q8N5F7
NKAP
59
LLPS-Hos-0189
ENSG00000147140.15
Q15233
NONO
60
LLPS-Hos-1946
ENSG00000142546.13
Q9Y314
NOSIP
61
LLPS-Hos-0657
ENSG00000126653.17
Q9H0G5
NSRP1
62
LLPS-Hos-2738
ENSG00000163545.8
Q9H093
NUAK2
63
LLPS-Hos-2667
ENSG00000162231.13
Q9UBU9
NXF1
64
LLPS-Hos-0142
ENSG00000114026.21
O15527
OGG1
65
LLPS-Hos-2852
ENSG00000169313.9
Q9H244
P2RY12
66
LLPS-Hos-1913
ENSG00000100836.10
Q86U42
PABPN1
67
LLPS-Hos-2073
ENSG00000169564.6
Q15365
PCBP1
68
LLPS-Hos-2104
ENSG00000171566.11
O43660
PLRG1
69
LLPS-Hos-2162
ENSG00000138398.15
Q13427
PPIG
70
LLPS-Hos-0212
ENSG00000110107.8
Q9UMS4
PRPF19
71
LLPS-Hos-0377
ENSG00000174231.16
Q6P2Q9
PRPF8
72
LLPS-Hos-1142
ENSG00000100567.12
P25788
PSMA3
73
LLPS-Hos-2824
ENSG00000121390.18
Q8WXF1
PSPC1
74
LLPS-Hos-0970
ENSG00000011304.19
P26599
PTBP1
75
LLPS-Hos-0702
ENSG00000107263.18
Q13905
RAPGEF1
76
LLPS-Hos-1403
ENSG00000134453.15
Q96I25
RBM17
77
LLPS-Hos-1330
ENSG00000100461.17
Q86U06
RBM23
78
LLPS-Hos-2739
ENSG00000179580.9
Q2KHN1
RNF151
79
LLPS-Hos-2451
ENSG00000205937.11
Q15287
RNPS1
80
LLPS-Hos-1451
ENSG00000205323.8
P82979
SARNP
81
LLPS-Hos-1876
ENSG00000168066.20
Q15637
SF1
82
LLPS-Hos-1282
ENSG00000099995.18
Q15459
SF3A1
83
LLPS-Hos-1763
ENSG00000104897.9
Q15428
SF3A2
84
LLPS-Hos-0124
ENSG00000183431.11
Q12874
SF3A3
85
LLPS-Hos-0826
ENSG00000115524.15
O75533
SF3B1
86
LLPS-Hos-0948
ENSG00000116560.10
P23246
SFPQ
87
LLPS-Hos-2559
ENSG00000166949.15
P84022
SMAD3
88
LLPS-Hos-1670
ENSG00000144028.14
O75643
SNRNP200
89
LLPS-Hos-1361
ENSG00000104852.14
P08621
SNRNP70
90
LLPS-Hos-1937
ENSG00000077312.8
P09012
SNRPA
91
LLPS-Hos-0140
ENSG00000131876.16
P09661
SNRPA1
92
LLPS-Hos-1897
ENSG00000125870.10
P08579
SNRPB2
93
LLPS-Hos-2209
ENSG00000159140.19
P18583
SON
94
LLPS-Hos-0038
ENSG00000167978.16
Q9UQ35
SRRM2
95
LLPS-Hos-1134
ENSG00000136450.12
Q07955
SRSF1
96
LLPS-Hos-1688
ENSG00000188529.14
O75494
SRSF10
97
LLPS-Hos-1377
ENSG00000116754.13
Q05519
SRSF11
98
LLPS-Hos-0150
ENSG00000161547.16
Q01130
SRSF2
99
LLPS-Hos-1496
ENSG00000112081.16
P84103
SRSF3
100
LLPS-Hos-1767
ENSG00000116350.16
Q08170
SRSF4
101
LLPS-Hos-2345
ENSG00000115875.18
Q16629
SRSF7
102
LLPS-Hos-2566
ENSG00000168610.14
P40763
STAT3
103
LLPS-Hos-0807
ENSG00000116030.16
P63165
SUMO1
104
LLPS-Hos-2384
ENSG00000168394.11
Q03518
TAP1
105
LLPS-Hos-0834
ENSG00000106799.12
P36897
TGFBR1
106
LLPS-Hos-1744
ENSG00000136527.17
P62995
TRA2B
107
LLPS-Hos-1048
ENSG00000163728.10
Q96N46
TTC14
108
LLPS-Hos-0481
ENSG00000063244.12
P26368
U2AF2
109
LLPS-Hos-0627
ENSG00000163714.17
O15042
U2SURP
110
LLPS-Hos-0884
ENSG00000082898.16
O14980
XPO1
111
LLPS-Hos-0718
ENSG00000083896.12
Q96MU7
YTHDC1
112
LLPS-Hos-1525
ENSG00000058673.16
O75152
ZC3H11A
113
LLPS-Hos-4071
ENSG00000103994.17
Q9H2Y7
ZNF106
114
LLPS-Hos-1957
ENSG00000172262.11
P52739
ZNF131
115
LLPS-Hos-2811
ENSG00000229809.8
P0C7X2
ZNF688
116
LLPS-Hos-3207
ENSG00000136819.15
Q9NZ63
C9orf78
117
LLPS-Hos-3599
ENSG00000143207.20
Q8NHY2
COP1
118
LLPS-Hos-4564
ENSG00000108799.12
Q92800
EZH1
119
LLPS-Hos-3666
ENSG00000106571.13
P10071
GLI3
120
LLPS-Hos-4449
ENSG00000136931.9
Q13285
NR5A1
121
LLPS-Hos-3833
ENSG00000258643.5
A6NDY0
PABPN1L
122
LLPS-Hos-4193
ENSG00000100941.8
Q9H307
PNN
123
LLPS-Hos-3029
ENSG00000134597.15
Q9Y388
RBMX2
124
LLPS-Hos-4123
ENSG00000184209.14
Q16560
SNRNP35
125
LLPS-Hos-3594
ENSG00000121067.17
O43791
SPOP