• Disorder
  • Domain
  • PTM
  • Variation
  • Mutation
  • Interaction
  • Disease
  • Drug
  • Physicochemical
  • Function
  • Proteomics
  • Structure
  • Localization
  • Expression
  • Element
  • Methylation

LLPS-Sot-0955
102579366

Integrated Annotations

▼ OVERVIEW


Status: Unreviewed
Protein Name: U6 snRNA-associated Sm-like protein LSm5
Gene Name: 102579366, LSM5
Ensembl Gene: PGSC0003DMG400029651
Ensembl Protein: PGSC0003DMT400076269
Organism: Solanum tuberosum
Taxa ID: 4113
LLPS Type: Others


▼ PROPERTY



——— Disorder propensity (calculated by IUPred2A)

▼ Classification


Condensates:
CondensateEvidenceOrthologs
P-bodyPredicted from orthologs(View)

▼ FUNCTION


Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.

▼ CROSS REFERENCE


▼ SEQUENCE


Protein Sequence (FASTA)
1     MSSNNPSQLL  PSELIDRCIG  SKIWVIMKGD  KELVGTLRGF  DVYVNMVLED  VTEYEITSEG  60
61    RRITKLDQIL  LNGNNIAILV  PGGSPPDE  88
Nucleotide CDS Sequence (FASTA)
1     ATGTCTTCGA  ACAACCCTTC  TCAGCTTCTT  CCTTCTGAGT  TGATTGATCG  TTGCATTGGT  60
61    TCAAAGATAT  GGGTGATAAT  GAAGGGTGAT  AAGGAGCTTG  TTGGTACACT  TAGAGGATTT  120
121   GATGTTTATG  TTAACATGGT  TCTTGAAGAT  GTTACTGAAT  ATGAGATCAC  TTCTGAAGGG  180
181   CGGAGGATAA  CAAAACTTGA  TCAGATATTG  CTCAATGGAA  ACAACATTGC  TATCCTGGTT  240
241   CCAGGAGGGT  CGCCACCTGA  TGAATGA  267

▼ KEYWORD


ID
Family
Complete proteome
mRNA processing
mRNA splicing
Nucleus
Reference proteome
Ribonucleoprotein
RNA-binding
Spliceosome

▼ GENE ONTOLOGY


ID
Classification
Description
Cellular Component
Spliceosomal complex
Molecular Function
RNA binding
Biological Process
MRNA processing
Biological Process
RNA splicing

▼ KEGG



▼ ORTHOLOGY


DrLLPS IDOrganismIdentityE-valueScore
LLPS-Sol-0254Solanum lycopersicum100.03e-45 161
LLPS-Gor-2142Gossypium raimondii97.591e-52 166
LLPS-Viv-0837Vitis vinifera96.511e-52 166
LLPS-Phv-2507Phaseolus vulgaris96.511e-53 168
LLPS-Via-1005Vigna angularis96.511e-53 168
LLPS-Vir-0984Vigna radiata96.511e-53 168
LLPS-Amt-0758Amborella trichopoda96.232e-29 105
LLPS-Orr-0559Oryza rufipogon95.48e-54 169
LLPS-Orm-0856Oryza meridionalis95.48e-54 169
LLPS-Zem-0066Zea mays95.41e-53 168
LLPS-Ors-1347Oryza sativa95.48e-54 169
LLPS-Orp-1853Oryza punctata95.48e-54 169
LLPS-Sob-1690Sorghum bicolor95.41e-53 168
LLPS-Orbr-2170Oryza brachyantha95.48e-54 169
LLPS-Orgl-0233Oryza glumaepatula95.48e-54 169
LLPS-Lep-1120Leersia perrieri95.41e-53 168
LLPS-Tra-1102Triticum aestivum95.46e-54 169
LLPS-Brd-1237Brachypodium distachyon95.48e-54 169
LLPS-Hov-0897Hordeum vulgare95.44e-53 169
LLPS-Sei-1880Setaria italica95.45e-53 171
LLPS-Ori-0964Oryza indica95.48e-54 169
LLPS-Orb-1807Oryza barthii95.48e-54 169
LLPS-Orni-0528Oryza nivara95.48e-54 169
LLPS-Coc-0518Corchorus capsularis95.358e-53 166
LLPS-Prp-0937Prunus persica95.353e-52 164
LLPS-Mae-1618Manihot esculenta95.358e-53 166
LLPS-Met-0170Medicago truncatula95.358e-53 166
LLPS-Thc-0968Theobroma cacao95.358e-53 166
LLPS-Tru-1522Triticum urartu95.083e-34 118
LLPS-Org-1178Oryza glaberrima95.084e-34 118
LLPS-Cus-0567Cucumis sativus94.194e-52 164
LLPS-Glm-0575Glycine max94.196e-53 166
LLPS-Pot-0099Populus trichocarpa93.187e-53 166
LLPS-Hea-1511Helianthus annuus93.023e-51 162
LLPS-Mua-1049Musa acuminata93.028e-52 163
LLPS-Art-2427Arabidopsis thaliana92.947e-52 164
LLPS-Php-0590Physcomitrella patens92.942e-51 166
LLPS-Sem-1325Selaginella moellendorffii92.772e-50 160
LLPS-Arl-1995Arabidopsis lyrata91.763e-51 162
LLPS-Bro-2383Brassica oleracea89.668e-51 161
LLPS-Brr-1725Brassica rapa89.668e-51 161
LLPS-Brn-1565Brassica napus89.668e-51 161
LLPS-Mod-3518Monodelphis domestica81.823e-1056.6
LLPS-Dac-1866Daucus carota80.813e-48 155
LLPS-Xet-1921Xenopus tropicalis77.332e-36 124
LLPS-Scm-3458Scophthalmus maximus77.271e-1672.8
LLPS-Orl-2666Oryzias latipes77.112e-40 137
LLPS-Anp-0652Anas platyrhynchos77.034e-35 120
LLPS-Pes-1665Pelodiscus sinensis77.034e-35 120
LLPS-Cis-0832Ciona savignyi76.478e-41 135
LLPS-Sus-0121Sus scrofa76.05e-35 121
LLPS-Gaga-0143Gallus gallus75.581e-41 138
LLPS-Meg-0190Meleagris gallopavo75.581e-41 138
LLPS-Cii-1238Ciona intestinalis75.586e-41 136
LLPS-Ere-0696Erinaceus europaeus75.444e-2389.7
LLPS-Osl-0398Ostreococcus lucimarinus75.291e-41 138
LLPS-Fia-2712Ficedula albicollis75.01e-35 122
LLPS-Cap-2955Cavia porcellus74.422e-41 137
LLPS-Caf-3272Canis familiaris74.421e-40 135
LLPS-Cas-1382Carlito syrichta74.422e-41 137
LLPS-Tag-2207Taeniopygia guttata74.425e-41 136
LLPS-Nol-1059Nomascus leucogenys74.422e-41 137
LLPS-Ict-2066Ictidomys tridecemlineatus74.422e-41 137
LLPS-Fec-0702Felis catus74.422e-41 137
LLPS-Lac-2117Latimeria chalumnae74.428e-42 138
LLPS-Hos-1835Homo sapiens74.422e-41 137
LLPS-Pap-2526Pan paniscus74.422e-41 137
LLPS-Urm-0890Ursus maritimus74.421e-40 137
LLPS-Pat-0895Pan troglodytes74.422e-41 137
LLPS-Loa-3155Loxodonta africana74.422e-41 137
LLPS-Man-0158Macaca nemestrina74.422e-41 137
LLPS-Otg-2650Otolemur garnettii74.422e-41 137
LLPS-Rhb-2768Rhinopithecus bieti74.422e-41 137
LLPS-Orc-1433Oryctolagus cuniculus74.422e-41 137
LLPS-Tut-0806Tursiops truncatus74.422e-41 137
LLPS-Bot-1025Bos taurus74.422e-41 137
LLPS-Dio-1888Dipodomys ordii74.422e-41 137
LLPS-Ran-0520Rattus norvegicus74.422e-41 137
LLPS-Myl-2656Myotis lucifugus74.422e-41 137
LLPS-Ova-0909Ovis aries74.422e-41 137
LLPS-Aim-2592Ailuropoda melanoleuca74.422e-41 137
LLPS-Mup-3550Mustela putorius furo74.422e-39 135
LLPS-Paa-1565Papio anubis74.422e-41 137
LLPS-Mal-1589Mandrillus leucophaeus74.422e-41 137
LLPS-Mum-3948Mus musculus74.422e-41 137
LLPS-Maf-2662Macaca fascicularis74.422e-41 137
LLPS-Mea-1035Mesocricetus auratus74.422e-41 137
LLPS-Aon-3380Aotus nancymaae74.422e-41 137
LLPS-Cea-0657Cercocebus atys74.422e-41 137
LLPS-Gog-1067Gorilla gorilla74.422e-41 137
LLPS-Caj-1959Callithrix jacchus74.426e-41 138
LLPS-Fud-0218Fukomys damarensis74.422e-41 137
LLPS-Pof-0082Poecilia formosa74.129e-41 135
LLPS-Gaa-0324Gasterosteus aculeatus74.121e-40 135
LLPS-Leo-1421Lepisosteus oculatus74.129e-41 135
LLPS-Icp-1580Ictalurus punctatus74.128e-41 135
LLPS-Scf-3471Scleropages formosus73.266e-41 136
LLPS-Cae-1122Caenorhabditis elegans73.261e-39 132
LLPS-Drm-1010Drosophila melanogaster72.53e-35 121
LLPS-Ten-1182Tetraodon nigroviridis72.411e-41 137
LLPS-Dar-0709Danio rerio72.413e-41 137
LLPS-Mam-0114Macaca mulatta72.091e-40 135
LLPS-Anc-2158Anolis carolinensis71.156e-2184.0
LLPS-Poa-4486Pongo abelii70.931e-39 132
LLPS-Zyt-0225Zymoseptoria tritici70.891e-31 112
LLPS-Trr-1271Trichoderma reesei70.01e-31 112
LLPS-Abg-1384Absidia glauca70.02e-34 119
LLPS-Scs-0835Sclerotinia sclerotiorum70.03e-31 110
LLPS-Dos-0847Dothistroma septosporum69.629e-31 109
LLPS-Tum-0199Tuber melanosporum69.143e-32 113
LLPS-Trv-1108Trichoderma virens68.753e-31 111
LLPS-Asfu-1082Aspergillus fumigatus68.753e-30 108
LLPS-Fus-0306Fusarium solani67.93e-31 111
LLPS-Asc-1296Aspergillus clavatus67.96e-31 110
LLPS-Fuv-0096Fusarium verticillioides67.94e-31 110
LLPS-Ved-0622Verticillium dahliae67.59e-31 109
LLPS-Asf-1355Aspergillus flavus67.51e-29 107
LLPS-Coo-0296Colletotrichum orbiculare67.59e-31 109
LLPS-Asn-1165Aspergillus nidulans67.51e-29 108
LLPS-Lem-0416Leptosphaeria maculans67.112e-2595.9
LLPS-Beb-1032Beauveria bassiana67.073e-30 108
LLPS-Gas-0063Galdieria sulphuraria67.052e-34 119
LLPS-Usm-0548Ustilago maydis66.673e-30 109
LLPS-Spr-1331Sporisorium reilianum66.673e-30 108
LLPS-Nec-0441Neurospora crassa66.671e-31 112
LLPS-Miv-0016Microbotryum violaceum66.271e-28 104
LLPS-Cogr-1131Colletotrichum graminicola65.436e-31 110
LLPS-Gag-0908Gaeumannomyces graminis65.434e-30 108
LLPS-Map-0932Magnaporthe poae65.435e-30 108
LLPS-Ast-0586Aspergillus terreus65.06e-29 105
LLPS-Nef-1335Neosartorya fischeri65.05e-1773.9
LLPS-Xim-0733Xiphophorus maculatus64.713e-33 116
LLPS-Blg-0349Blumeria graminis64.21e-29 107
LLPS-Mao-1394Magnaporthe oryzae64.28e-30 107
LLPS-Crn-0805Cryptococcus neoformans63.758e-30 107
LLPS-Phn-0239Phaeosphaeria nodorum63.646e-2492.4
LLPS-Asm-1594Astyanax mexicanus62.921e-32 115
LLPS-Ora-2255Ornithorhynchus anatinus62.674e-29 105
LLPS-Scj-0516Schizosaccharomyces japonicus62.345e-2595.1
LLPS-Tar-1013Takifugu rubripes62.247e-33 116
LLPS-Pug-0677Puccinia graminis62.28e-29 106
LLPS-Eqc-3453Equus caballus61.632e-30 108
LLPS-Asni-1218Aspergillus niger58.932e-1364.3
LLPS-Pyt-0195Pyrenophora teres58.334e-2185.5
LLPS-Yal-0424Yarrowia lipolytica57.144e-2082.8
LLPS-Scp-1037Schizosaccharomyces pombe55.844e-2390.1
LLPS-Scc-0912Schizosaccharomyces cryophilus53.258e-2286.7
LLPS-Asg-0446Ashbya gossypii48.12e-1980.9
LLPS-Pytr-1282Pyrenophora triticirepentis47.064e-0850.8
LLPS-Sac-0285Saccharomyces cerevisiae46.342e-1570.5
LLPS-Cym-0422Cyanidioschyzon merolae45.02e-2083.6
LLPS-Kop-0427Komagataella pastoris42.865e-1363.9
LLPS-Nia-0082Nicotiana attenuata36.365e-0749.7