LLPS-Sot-0955
102579366
Integrated Annotations
▼ OVERVIEW
Status: | Unreviewed |
Protein Name: | U6 snRNA-associated Sm-like protein LSm5 |
Gene Name: | 102579366, LSM5 |
Ensembl Gene: | PGSC0003DMG400029651 |
Ensembl Protein: | PGSC0003DMT400076269 |
Organism: | Solanum tuberosum |
Taxa ID: | 4113 |
LLPS Type: | Others |
▼ Classification
Condensates:
Condensate | Evidence | Orthologs |
---|---|---|
P-body | Predicted from orthologs | (View) |
▼ FUNCTION
Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. |
▼ CROSS REFERENCE
Database | Nucleotide ID | Protein ID |
---|---|---|
Ensembl | PGSC0003DMT400076269 | PGSC0003DMT400076269 |
UniProt | M1CWH0, M1CWH0_SOLTU | |
RefSeq | XM_006360272.2 | XP_006360334.1 |
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 MSSNNPSQLL PSELIDRCIG SKIWVIMKGD KELVGTLRGF DVYVNMVLED VTEYEITSEG 60 61 RRITKLDQIL LNGNNIAILV PGGSPPDE 88 |
Nucleotide CDS Sequence (FASTA) |
1 ATGTCTTCGA ACAACCCTTC TCAGCTTCTT CCTTCTGAGT TGATTGATCG TTGCATTGGT 60 61 TCAAAGATAT GGGTGATAAT GAAGGGTGAT AAGGAGCTTG TTGGTACACT TAGAGGATTT 120 121 GATGTTTATG TTAACATGGT TCTTGAAGAT GTTACTGAAT ATGAGATCAC TTCTGAAGGG 180 181 CGGAGGATAA CAAAACTTGA TCAGATATTG CTCAATGGAA ACAACATTGC TATCCTGGTT 240 241 CCAGGAGGGT CGCCACCTGA TGAATGA 267 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Spliceosomal complex | |
Molecular Function | RNA binding | |
Biological Process | MRNA processing | |
Biological Process | RNA splicing |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Sol-0254 | Solanum lycopersicum | 100.0 | 3e-45 | 161 |
LLPS-Gor-2142 | Gossypium raimondii | 97.59 | 1e-52 | 166 |
LLPS-Viv-0837 | Vitis vinifera | 96.51 | 1e-52 | 166 |
LLPS-Phv-2507 | Phaseolus vulgaris | 96.51 | 1e-53 | 168 |
LLPS-Via-1005 | Vigna angularis | 96.51 | 1e-53 | 168 |
LLPS-Vir-0984 | Vigna radiata | 96.51 | 1e-53 | 168 |
LLPS-Amt-0758 | Amborella trichopoda | 96.23 | 2e-29 | 105 |
LLPS-Orr-0559 | Oryza rufipogon | 95.4 | 8e-54 | 169 |
LLPS-Orm-0856 | Oryza meridionalis | 95.4 | 8e-54 | 169 |
LLPS-Zem-0066 | Zea mays | 95.4 | 1e-53 | 168 |
LLPS-Ors-1347 | Oryza sativa | 95.4 | 8e-54 | 169 |
LLPS-Orp-1853 | Oryza punctata | 95.4 | 8e-54 | 169 |
LLPS-Sob-1690 | Sorghum bicolor | 95.4 | 1e-53 | 168 |
LLPS-Orbr-2170 | Oryza brachyantha | 95.4 | 8e-54 | 169 |
LLPS-Orgl-0233 | Oryza glumaepatula | 95.4 | 8e-54 | 169 |
LLPS-Lep-1120 | Leersia perrieri | 95.4 | 1e-53 | 168 |
LLPS-Tra-1102 | Triticum aestivum | 95.4 | 6e-54 | 169 |
LLPS-Brd-1237 | Brachypodium distachyon | 95.4 | 8e-54 | 169 |
LLPS-Hov-0897 | Hordeum vulgare | 95.4 | 4e-53 | 169 |
LLPS-Sei-1880 | Setaria italica | 95.4 | 5e-53 | 171 |
LLPS-Ori-0964 | Oryza indica | 95.4 | 8e-54 | 169 |
LLPS-Orb-1807 | Oryza barthii | 95.4 | 8e-54 | 169 |
LLPS-Orni-0528 | Oryza nivara | 95.4 | 8e-54 | 169 |
LLPS-Coc-0518 | Corchorus capsularis | 95.35 | 8e-53 | 166 |
LLPS-Prp-0937 | Prunus persica | 95.35 | 3e-52 | 164 |
LLPS-Mae-1618 | Manihot esculenta | 95.35 | 8e-53 | 166 |
LLPS-Met-0170 | Medicago truncatula | 95.35 | 8e-53 | 166 |
LLPS-Thc-0968 | Theobroma cacao | 95.35 | 8e-53 | 166 |
LLPS-Tru-1522 | Triticum urartu | 95.08 | 3e-34 | 118 |
LLPS-Org-1178 | Oryza glaberrima | 95.08 | 4e-34 | 118 |
LLPS-Cus-0567 | Cucumis sativus | 94.19 | 4e-52 | 164 |
LLPS-Glm-0575 | Glycine max | 94.19 | 6e-53 | 166 |
LLPS-Pot-0099 | Populus trichocarpa | 93.18 | 7e-53 | 166 |
LLPS-Hea-1511 | Helianthus annuus | 93.02 | 3e-51 | 162 |
LLPS-Mua-1049 | Musa acuminata | 93.02 | 8e-52 | 163 |
LLPS-Art-2427 | Arabidopsis thaliana | 92.94 | 7e-52 | 164 |
LLPS-Php-0590 | Physcomitrella patens | 92.94 | 2e-51 | 166 |
LLPS-Sem-1325 | Selaginella moellendorffii | 92.77 | 2e-50 | 160 |
LLPS-Arl-1995 | Arabidopsis lyrata | 91.76 | 3e-51 | 162 |
LLPS-Bro-2383 | Brassica oleracea | 89.66 | 8e-51 | 161 |
LLPS-Brr-1725 | Brassica rapa | 89.66 | 8e-51 | 161 |
LLPS-Brn-1565 | Brassica napus | 89.66 | 8e-51 | 161 |
LLPS-Mod-3518 | Monodelphis domestica | 81.82 | 3e-10 | 56.6 |
LLPS-Dac-1866 | Daucus carota | 80.81 | 3e-48 | 155 |
LLPS-Xet-1921 | Xenopus tropicalis | 77.33 | 2e-36 | 124 |
LLPS-Scm-3458 | Scophthalmus maximus | 77.27 | 1e-16 | 72.8 |
LLPS-Orl-2666 | Oryzias latipes | 77.11 | 2e-40 | 137 |
LLPS-Anp-0652 | Anas platyrhynchos | 77.03 | 4e-35 | 120 |
LLPS-Pes-1665 | Pelodiscus sinensis | 77.03 | 4e-35 | 120 |
LLPS-Cis-0832 | Ciona savignyi | 76.47 | 8e-41 | 135 |
LLPS-Sus-0121 | Sus scrofa | 76.0 | 5e-35 | 121 |
LLPS-Gaga-0143 | Gallus gallus | 75.58 | 1e-41 | 138 |
LLPS-Meg-0190 | Meleagris gallopavo | 75.58 | 1e-41 | 138 |
LLPS-Cii-1238 | Ciona intestinalis | 75.58 | 6e-41 | 136 |
LLPS-Ere-0696 | Erinaceus europaeus | 75.44 | 4e-23 | 89.7 |
LLPS-Osl-0398 | Ostreococcus lucimarinus | 75.29 | 1e-41 | 138 |
LLPS-Fia-2712 | Ficedula albicollis | 75.0 | 1e-35 | 122 |
LLPS-Cap-2955 | Cavia porcellus | 74.42 | 2e-41 | 137 |
LLPS-Caf-3272 | Canis familiaris | 74.42 | 1e-40 | 135 |
LLPS-Cas-1382 | Carlito syrichta | 74.42 | 2e-41 | 137 |
LLPS-Tag-2207 | Taeniopygia guttata | 74.42 | 5e-41 | 136 |
LLPS-Nol-1059 | Nomascus leucogenys | 74.42 | 2e-41 | 137 |
LLPS-Ict-2066 | Ictidomys tridecemlineatus | 74.42 | 2e-41 | 137 |
LLPS-Fec-0702 | Felis catus | 74.42 | 2e-41 | 137 |
LLPS-Lac-2117 | Latimeria chalumnae | 74.42 | 8e-42 | 138 |
LLPS-Hos-1835 | Homo sapiens | 74.42 | 2e-41 | 137 |
LLPS-Pap-2526 | Pan paniscus | 74.42 | 2e-41 | 137 |
LLPS-Urm-0890 | Ursus maritimus | 74.42 | 1e-40 | 137 |
LLPS-Pat-0895 | Pan troglodytes | 74.42 | 2e-41 | 137 |
LLPS-Loa-3155 | Loxodonta africana | 74.42 | 2e-41 | 137 |
LLPS-Man-0158 | Macaca nemestrina | 74.42 | 2e-41 | 137 |
LLPS-Otg-2650 | Otolemur garnettii | 74.42 | 2e-41 | 137 |
LLPS-Rhb-2768 | Rhinopithecus bieti | 74.42 | 2e-41 | 137 |
LLPS-Orc-1433 | Oryctolagus cuniculus | 74.42 | 2e-41 | 137 |
LLPS-Tut-0806 | Tursiops truncatus | 74.42 | 2e-41 | 137 |
LLPS-Bot-1025 | Bos taurus | 74.42 | 2e-41 | 137 |
LLPS-Dio-1888 | Dipodomys ordii | 74.42 | 2e-41 | 137 |
LLPS-Ran-0520 | Rattus norvegicus | 74.42 | 2e-41 | 137 |
LLPS-Myl-2656 | Myotis lucifugus | 74.42 | 2e-41 | 137 |
LLPS-Ova-0909 | Ovis aries | 74.42 | 2e-41 | 137 |
LLPS-Aim-2592 | Ailuropoda melanoleuca | 74.42 | 2e-41 | 137 |
LLPS-Mup-3550 | Mustela putorius furo | 74.42 | 2e-39 | 135 |
LLPS-Paa-1565 | Papio anubis | 74.42 | 2e-41 | 137 |
LLPS-Mal-1589 | Mandrillus leucophaeus | 74.42 | 2e-41 | 137 |
LLPS-Mum-3948 | Mus musculus | 74.42 | 2e-41 | 137 |
LLPS-Maf-2662 | Macaca fascicularis | 74.42 | 2e-41 | 137 |
LLPS-Mea-1035 | Mesocricetus auratus | 74.42 | 2e-41 | 137 |
LLPS-Aon-3380 | Aotus nancymaae | 74.42 | 2e-41 | 137 |
LLPS-Cea-0657 | Cercocebus atys | 74.42 | 2e-41 | 137 |
LLPS-Gog-1067 | Gorilla gorilla | 74.42 | 2e-41 | 137 |
LLPS-Caj-1959 | Callithrix jacchus | 74.42 | 6e-41 | 138 |
LLPS-Fud-0218 | Fukomys damarensis | 74.42 | 2e-41 | 137 |
LLPS-Pof-0082 | Poecilia formosa | 74.12 | 9e-41 | 135 |
LLPS-Gaa-0324 | Gasterosteus aculeatus | 74.12 | 1e-40 | 135 |
LLPS-Leo-1421 | Lepisosteus oculatus | 74.12 | 9e-41 | 135 |
LLPS-Icp-1580 | Ictalurus punctatus | 74.12 | 8e-41 | 135 |
LLPS-Scf-3471 | Scleropages formosus | 73.26 | 6e-41 | 136 |
LLPS-Cae-1122 | Caenorhabditis elegans | 73.26 | 1e-39 | 132 |
LLPS-Drm-1010 | Drosophila melanogaster | 72.5 | 3e-35 | 121 |
LLPS-Ten-1182 | Tetraodon nigroviridis | 72.41 | 1e-41 | 137 |
LLPS-Dar-0709 | Danio rerio | 72.41 | 3e-41 | 137 |
LLPS-Mam-0114 | Macaca mulatta | 72.09 | 1e-40 | 135 |
LLPS-Anc-2158 | Anolis carolinensis | 71.15 | 6e-21 | 84.0 |
LLPS-Poa-4486 | Pongo abelii | 70.93 | 1e-39 | 132 |
LLPS-Zyt-0225 | Zymoseptoria tritici | 70.89 | 1e-31 | 112 |
LLPS-Trr-1271 | Trichoderma reesei | 70.0 | 1e-31 | 112 |
LLPS-Abg-1384 | Absidia glauca | 70.0 | 2e-34 | 119 |
LLPS-Scs-0835 | Sclerotinia sclerotiorum | 70.0 | 3e-31 | 110 |
LLPS-Dos-0847 | Dothistroma septosporum | 69.62 | 9e-31 | 109 |
LLPS-Tum-0199 | Tuber melanosporum | 69.14 | 3e-32 | 113 |
LLPS-Trv-1108 | Trichoderma virens | 68.75 | 3e-31 | 111 |
LLPS-Asfu-1082 | Aspergillus fumigatus | 68.75 | 3e-30 | 108 |
LLPS-Fus-0306 | Fusarium solani | 67.9 | 3e-31 | 111 |
LLPS-Asc-1296 | Aspergillus clavatus | 67.9 | 6e-31 | 110 |
LLPS-Fuv-0096 | Fusarium verticillioides | 67.9 | 4e-31 | 110 |
LLPS-Ved-0622 | Verticillium dahliae | 67.5 | 9e-31 | 109 |
LLPS-Asf-1355 | Aspergillus flavus | 67.5 | 1e-29 | 107 |
LLPS-Coo-0296 | Colletotrichum orbiculare | 67.5 | 9e-31 | 109 |
LLPS-Asn-1165 | Aspergillus nidulans | 67.5 | 1e-29 | 108 |
LLPS-Lem-0416 | Leptosphaeria maculans | 67.11 | 2e-25 | 95.9 |
LLPS-Beb-1032 | Beauveria bassiana | 67.07 | 3e-30 | 108 |
LLPS-Gas-0063 | Galdieria sulphuraria | 67.05 | 2e-34 | 119 |
LLPS-Usm-0548 | Ustilago maydis | 66.67 | 3e-30 | 109 |
LLPS-Spr-1331 | Sporisorium reilianum | 66.67 | 3e-30 | 108 |
LLPS-Nec-0441 | Neurospora crassa | 66.67 | 1e-31 | 112 |
LLPS-Miv-0016 | Microbotryum violaceum | 66.27 | 1e-28 | 104 |
LLPS-Cogr-1131 | Colletotrichum graminicola | 65.43 | 6e-31 | 110 |
LLPS-Gag-0908 | Gaeumannomyces graminis | 65.43 | 4e-30 | 108 |
LLPS-Map-0932 | Magnaporthe poae | 65.43 | 5e-30 | 108 |
LLPS-Ast-0586 | Aspergillus terreus | 65.0 | 6e-29 | 105 |
LLPS-Nef-1335 | Neosartorya fischeri | 65.0 | 5e-17 | 73.9 |
LLPS-Xim-0733 | Xiphophorus maculatus | 64.71 | 3e-33 | 116 |
LLPS-Blg-0349 | Blumeria graminis | 64.2 | 1e-29 | 107 |
LLPS-Mao-1394 | Magnaporthe oryzae | 64.2 | 8e-30 | 107 |
LLPS-Crn-0805 | Cryptococcus neoformans | 63.75 | 8e-30 | 107 |
LLPS-Phn-0239 | Phaeosphaeria nodorum | 63.64 | 6e-24 | 92.4 |
LLPS-Asm-1594 | Astyanax mexicanus | 62.92 | 1e-32 | 115 |
LLPS-Ora-2255 | Ornithorhynchus anatinus | 62.67 | 4e-29 | 105 |
LLPS-Scj-0516 | Schizosaccharomyces japonicus | 62.34 | 5e-25 | 95.1 |
LLPS-Tar-1013 | Takifugu rubripes | 62.24 | 7e-33 | 116 |
LLPS-Pug-0677 | Puccinia graminis | 62.2 | 8e-29 | 106 |
LLPS-Eqc-3453 | Equus caballus | 61.63 | 2e-30 | 108 |
LLPS-Asni-1218 | Aspergillus niger | 58.93 | 2e-13 | 64.3 |
LLPS-Pyt-0195 | Pyrenophora teres | 58.33 | 4e-21 | 85.5 |
LLPS-Yal-0424 | Yarrowia lipolytica | 57.14 | 4e-20 | 82.8 |
LLPS-Scp-1037 | Schizosaccharomyces pombe | 55.84 | 4e-23 | 90.1 |
LLPS-Scc-0912 | Schizosaccharomyces cryophilus | 53.25 | 8e-22 | 86.7 |
LLPS-Asg-0446 | Ashbya gossypii | 48.1 | 2e-19 | 80.9 |
LLPS-Pytr-1282 | Pyrenophora triticirepentis | 47.06 | 4e-08 | 50.8 |
LLPS-Sac-0285 | Saccharomyces cerevisiae | 46.34 | 2e-15 | 70.5 |
LLPS-Cym-0422 | Cyanidioschyzon merolae | 45.0 | 2e-20 | 83.6 |
LLPS-Kop-0427 | Komagataella pastoris | 42.86 | 5e-13 | 63.9 |
LLPS-Nia-0082 | Nicotiana attenuata | 36.36 | 5e-07 | 49.7 |