DrLLPS - Data resource of LLPS

LLPS-Org-1178
LSM5

Integrated Annotations

▼ OVERVIEW


Status:	Unreviewed
Protein Name:	U6 snRNA-associated Sm-like protein LSm5
Gene Name:	LSM5
Ensembl Gene:	ORGLA05G0129300
Ensembl Protein:	ORGLA05G0129300.1
Organism:	Oryza glaberrima
Taxa ID:	4538
LLPS Type:	Others

▼ PROPERTY

——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:

Condensate	Evidence	Orthologs
P-body	Predicted from orthologs	(View)

Organism	DrLLPS ID	UniProt ID	LLPS type	Condensate	Identity	E-value	Score
Saccharomyces cerevisiae	LLPS-Sac-0285	P40089	Client	P-body	47.62	4e-09	53.5

▼ FUNCTION

Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.

▼ CROSS REFERENCE

Database	Nucleotide ID	Protein ID
Ensembl	ORGLA05G0129300.1	ORGLA05G0129300.1
UniProt		I1PV95, I1PV95_ORYGL

▼ SEQUENCE

Protein Sequence (FASTA)
1 MKGDKELVGT LCGFDVYVNM VLEDVTEYEY TAEGRRITKL DQILLNGNNI AILVPGGSPP 60 61 DVA 63
Nucleotide CDS Sequence (FASTA)
1 ATGAAGGGTG ACAAGGAGCT CGTCGGCACT CTCTGTGGGT TCGATGTGTA CGTCAACATG 60 61 GTGCTCGAGG ACGTTACTGA GTATGAATAC ACTGCTGAAG GCCGTCGCAT AACAAAGCTT 120 121 GATCAGATAC TCCTAAACGG CAACAATATA GCTATTTTGG TTCCTGGTGG TTCTCCCCCA 180 181 GATGTGGCAT AA 192

▼ KEYWORD

ID	Family
KW-0181	Complete proteome
KW-0507	mRNA processing
KW-0508	mRNA splicing
KW-0539	Nucleus
KW-1185	Reference proteome
KW-0687	Ribonucleoprotein
KW-0694	RNA-binding
KW-0747	Spliceosome

▼ GENE ONTOLOGY

ID	Classification	Description
GO:0005681	Cellular Component	Spliceosomal complex
GO:0003723	Molecular Function	RNA binding
GO:0006397	Biological Process	MRNA processing
GO:0008380	Biological Process	RNA splicing

▼ ORTHOLOGY

DrLLPS ID	Organism	Identity	E-value	Score
LLPS-Orgl-0233	Oryza glumaepatula	100.0	8e-39	129
LLPS-Brd-1237	Brachypodium distachyon	100.0	8e-39	129
LLPS-Sei-1880	Setaria italica	100.0	3e-39	134
LLPS-Ori-0964	Oryza indica	100.0	8e-39	129
LLPS-Orb-1807	Oryza barthii	100.0	8e-39	129
LLPS-Orni-0528	Oryza nivara	100.0	8e-39	129
LLPS-Orm-0856	Oryza meridionalis	100.0	8e-39	129
LLPS-Orr-0559	Oryza rufipogon	100.0	8e-39	129
LLPS-Zem-0066	Zea mays	100.0	4e-38	127
LLPS-Orp-1853	Oryza punctata	100.0	8e-39	129
LLPS-Ors-1347	Oryza sativa	100.0	8e-39	129
LLPS-Sob-1690	Sorghum bicolor	100.0	4e-38	127
LLPS-Orbr-2170	Oryza brachyantha	100.0	8e-39	129
LLPS-Lep-1120	Leersia perrieri	98.41	4e-38	127
LLPS-Tra-1102	Triticum aestivum	98.41	2e-38	128
LLPS-Hov-0897	Hordeum vulgare	98.41	2e-38	130
LLPS-Tru-1522	Triticum urartu	98.41	2e-38	127
LLPS-Met-0170	Medicago truncatula	96.61	1e-32	114
LLPS-Cus-0567	Cucumis sativus	96.61	1e-32	114
LLPS-Mua-1049	Musa acuminata	96.61	8e-33	114
LLPS-Thc-0968	Theobroma cacao	96.61	1e-32	114
LLPS-Coc-0518	Corchorus capsularis	96.61	1e-32	114
LLPS-Pot-0099	Populus trichocarpa	96.61	1e-32	114
LLPS-Phv-1406	Phaseolus vulgaris	96.61	9e-33	114
LLPS-Mae-1618	Manihot esculenta	96.61	1e-32	114
LLPS-Amt-0758	Amborella trichopoda	96.3	2e-09	53.1
LLPS-Sot-0955	Solanum tuberosum	95.08	3e-34	118
LLPS-Via-1005	Vigna angularis	94.92	2e-32	113
LLPS-Vir-0984	Vigna radiata	94.92	2e-32	113
LLPS-Glm-0575	Glycine max	94.92	2e-32	112
LLPS-Hea-1018	Helianthus annuus	94.92	7e-32	113
LLPS-Prp-0937	Prunus persica	94.92	7e-32	111
LLPS-Gor-2142	Gossypium raimondii	94.92	5e-32	112
LLPS-Viv-0837	Vitis vinifera	94.92	3e-32	112
LLPS-Sol-0254	Solanum lycopersicum	94.23	3e-25	103
LLPS-Arl-1995	Arabidopsis lyrata	91.8	2e-32	113
LLPS-Art-2427	Arabidopsis thaliana	91.8	3e-32	112
LLPS-Php-0590	Physcomitrella patens	91.53	3e-31	113
LLPS-Sem-1325	Selaginella moellendorffii	89.83	2e-30	107
LLPS-Brn-1565	Brassica napus	88.71	1e-31	111
LLPS-Bro-2383	Brassica oleracea	88.71	1e-31	111
LLPS-Brr-1725	Brassica rapa	88.71	1e-31	111
LLPS-Osl-0398	Ostreococcus lucimarinus	83.33	2e-27	100
LLPS-Anc-2158	Anolis carolinensis	81.48	3e-07	47.4
LLPS-Anp-0652	Anas platyrhynchos	80.0	6e-27	99.0
LLPS-Pes-1665	Pelodiscus sinensis	80.0	6e-27	99.0
LLPS-Mod-3518	Monodelphis domestica	79.41	1e-10	57.0
LLPS-Xet-1921	Xenopus tropicalis	79.25	9e-23	88.2
LLPS-Bot-1025	Bos taurus	79.03	1e-27	101
LLPS-Dio-1888	Dipodomys ordii	79.03	1e-27	101
LLPS-Tut-0806	Tursiops truncatus	79.03	1e-27	101
LLPS-Aim-2592	Ailuropoda melanoleuca	79.03	1e-27	101
LLPS-Mup-3550	Mustela putorius furo	79.03	9e-28	104
LLPS-Ova-0909	Ovis aries	79.03	1e-27	101
LLPS-Myl-2656	Myotis lucifugus	79.03	1e-27	101
LLPS-Paa-1565	Papio anubis	79.03	1e-27	101
LLPS-Mal-1589	Mandrillus leucophaeus	79.03	1e-27	101
LLPS-Ran-0520	Rattus norvegicus	79.03	1e-27	101
LLPS-Sus-0121	Sus scrofa	79.03	2e-27	100
LLPS-Aon-3380	Aotus nancymaae	79.03	9e-28	101
LLPS-Cea-0657	Cercocebus atys	79.03	1e-27	101
LLPS-Orl-2666	Oryzias latipes	79.03	4e-27	101
LLPS-Maf-2662	Macaca fascicularis	79.03	1e-27	101
LLPS-Mum-3948	Mus musculus	79.03	1e-27	101
LLPS-Mea-1035	Mesocricetus auratus	79.03	1e-27	101
LLPS-Caj-1959	Callithrix jacchus	79.03	3e-27	102
LLPS-Fud-0218	Fukomys damarensis	79.03	1e-27	101
LLPS-Gog-1067	Gorilla gorilla	79.03	1e-27	101
LLPS-Cap-2955	Cavia porcellus	79.03	1e-27	101
LLPS-Caf-3272	Canis familiaris	79.03	4e-27	99.8
LLPS-Tag-2207	Taeniopygia guttata	79.03	8e-28	101
LLPS-Nol-1059	Nomascus leucogenys	79.03	1e-27	101
LLPS-Ict-2066	Ictidomys tridecemlineatus	79.03	1e-27	101
LLPS-Gaga-0143	Gallus gallus	79.03	9e-28	101
LLPS-Cas-1382	Carlito syrichta	79.03	1e-27	101
LLPS-Loa-3155	Loxodonta africana	79.03	1e-27	101
LLPS-Man-0158	Macaca nemestrina	79.03	1e-27	101
LLPS-Fec-0702	Felis catus	79.03	1e-27	101
LLPS-Lac-2117	Latimeria chalumnae	79.03	4e-28	102
LLPS-Hos-1835	Homo sapiens	79.03	1e-27	101
LLPS-Meg-0190	Meleagris gallopavo	79.03	9e-28	101
LLPS-Pat-0895	Pan troglodytes	79.03	1e-27	101
LLPS-Pap-2526	Pan paniscus	79.03	1e-27	101
LLPS-Rhb-2768	Rhinopithecus bieti	79.03	1e-27	101
LLPS-Orc-1433	Oryctolagus cuniculus	79.03	1e-27	101
LLPS-Fia-2712	Ficedula albicollis	79.03	2e-27	100
LLPS-Otg-2650	Otolemur garnettii	79.03	1e-27	101
LLPS-Drm-1010	Drosophila melanogaster	78.95	4e-25	94.4
LLPS-Dac-1866	Daucus carota	77.78	3e-29	105
LLPS-Scf-3471	Scleropages formosus	77.42	2e-27	100
LLPS-Gaa-0324	Gasterosteus aculeatus	77.42	3e-27	100
LLPS-Leo-1421	Lepisosteus oculatus	77.42	2e-27	100
LLPS-Icp-1580	Ictalurus punctatus	77.42	2e-27	100
LLPS-Mam-0114	Macaca mulatta	77.42	3e-27	100
LLPS-Ten-1182	Tetraodon nigroviridis	77.42	3e-27	100
LLPS-Dar-0709	Danio rerio	77.42	2e-27	100
LLPS-Pof-0082	Poecilia formosa	77.42	3e-27	100
LLPS-Urm-0890	Ursus maritimus	76.19	1e-26	100
LLPS-Cis-0832	Ciona savignyi	75.81	2e-27	100
LLPS-Cii-1238	Ciona intestinalis	75.81	3e-27	99.8
LLPS-Scm-3458	Scophthalmus maximus	75.56	5e-17	72.8
LLPS-Poa-4486	Pongo abelii	74.19	5e-26	97.1
LLPS-Ere-0696	Erinaceus europaeus	73.68	6e-23	88.2
LLPS-Cae-1122	Caenorhabditis elegans	72.58	4e-25	94.7
LLPS-Tum-0199	Tuber melanosporum	70.0	1e-19	80.1
LLPS-Trr-1271	Trichoderma reesei	68.33	2e-19	79.7
LLPS-Zyt-0225	Zymoseptoria tritici	67.8	1e-19	80.5
LLPS-Gas-0063	Galdieria sulphuraria	67.21	5e-22	86.7
LLPS-Abg-1384	Absidia glauca	66.67	6e-21	83.6
LLPS-Asc-1296	Aspergillus clavatus	66.67	9e-19	77.8
LLPS-Asn-1165	Aspergillus nidulans	66.67	1e-17	76.3
LLPS-Coo-0296	Colletotrichum orbiculare	66.67	6e-19	78.6
LLPS-Trv-1108	Trichoderma virens	66.67	6e-19	78.6
LLPS-Cogr-1131	Colletotrichum graminicola	66.67	2e-19	79.3
LLPS-Asfu-1082	Aspergillus fumigatus	66.67	3e-18	76.6
LLPS-Nef-1335	Neosartorya fischeri	66.67	2e-18	76.6
LLPS-Dos-0847	Dothistroma septosporum	66.1	8e-19	78.2
LLPS-Nec-0441	Neurospora crassa	65.08	9e-20	80.5
LLPS-Fuv-0096	Fusarium verticillioides	65.08	2e-19	79.7
LLPS-Map-0932	Magnaporthe poae	65.08	3e-19	79.3
LLPS-Fus-0306	Fusarium solani	65.08	2e-19	79.3
LLPS-Asf-1355	Aspergillus flavus	65.0	2e-17	74.7
LLPS-Scs-0835	Sclerotinia sclerotiorum	65.0	5e-18	75.9
LLPS-Gag-0908	Gaeumannomyces graminis	65.0	2e-18	77.4
LLPS-Ved-0622	Verticillium dahliae	65.0	1e-18	77.8
LLPS-Xim-0733	Xiphophorus maculatus	64.52	5e-20	81.3
LLPS-Spr-1331	Sporisorium reilianum	64.52	9e-19	78.6
LLPS-Usm-0548	Ustilago maydis	64.52	7e-19	79.0
LLPS-Beb-1032	Beauveria bassiana	64.06	5e-17	73.6
LLPS-Crn-0805	Cryptococcus neoformans	63.33	8e-18	75.5
LLPS-Mao-1394	Magnaporthe oryzae	63.33	3e-18	76.6
LLPS-Lem-0416	Leptosphaeria maculans	63.16	3e-13	63.5
LLPS-Phn-0239	Phaeosphaeria nodorum	63.16	9e-13	62.4
LLPS-Asm-1594	Astyanax mexicanus	63.08	5e-19	79.0
LLPS-Eqc-3453	Equus caballus	62.9	1e-17	74.7
LLPS-Tar-1013	Takifugu rubripes	62.5	2e-18	78.6
LLPS-Pyt-0195	Pyrenophora teres	62.26	7e-11	57.8
LLPS-Ora-2255	Ornithorhynchus anatinus	62.07	1e-18	77.4
LLPS-Blg-0349	Blumeria graminis	61.67	3e-17	73.9
LLPS-Ast-0586	Aspergillus terreus	61.67	5e-17	73.6
LLPS-Miv-0016	Microbotryum violaceum	61.54	1e-17	75.1
LLPS-Asni-1218	Aspergillus niger	60.71	9e-15	67.0
LLPS-Scj-0516	Schizosaccharomyces japonicus	59.32	5e-14	65.5
LLPS-Pug-0677	Puccinia graminis	58.06	2e-16	73.2
LLPS-Scp-1037	Schizosaccharomyces pombe	54.24	3e-12	60.8
LLPS-Yal-0424	Yarrowia lipolytica	52.63	5e-09	52.4
LLPS-Scc-0912	Schizosaccharomyces cryophilus	52.54	2e-11	58.9
LLPS-Asg-0446	Ashbya gossypii	49.18	4e-12	60.5
LLPS-Pytr-1282	Pyrenophora triticirepentis	48.53	9e-09	51.6
LLPS-Sac-0285	Saccharomyces cerevisiae	47.62	2e-09	53.5
LLPS-Cym-0422	Cyanidioschyzon merolae	44.64	3e-10	55.8

LLPS-Org-1178LSM5

Protein Sequence

Nucleotide Sequence

LLPS-Org-1178
LSM5