Caenorhabditis elegans      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 57 genes.  Reviewed (25 or Unreviewed (32

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Cae-0241
WBGene00000410
Q9TVL3
cdk-9
2
LLPS-Cae-0129
WBGene00000479
Q95YF3
cgh-1
3
LLPS-Cae-0271
WBGene00000774
O45577
cpf-2
4
LLPS-Cae-0019
WBGene00003582
O62255
dcap-2
5
LLPS-Cae-2169
WBGene00021468
Q95XR4
epg-2
6
LLPS-Cae-0032
WBGene00001423
Q22053
fib-1
7
LLPS-Cae-0229
WBGene00002077
Q9N5V3
imb-3
8
LLPS-Cae-0337
WBGene00002244
D0PV95
laf-1
9
LLPS-Cae-1781
WBGene00002583
Q95Q95
let-363
10
LLPS-Cae-0112
WBGene00003175
P91910
mec-12
11
LLPS-Cae-2080
WBGene00001569
Q9TXM1
meg-3
12
LLPS-Cae-2100
WBGene00003230
Q9XUB2
mex-5
13
LLPS-Cae-0109
WBGene00003796
G5EEH9
npp-10
14
LLPS-Cae-0017
WBGene00003902
Q9U302
pab-1
15
LLPS-Cae-2107
WBGene00003992
Q9TZQ3
pgl-1
16
LLPS-Cae-2109
WBGene00003994
G5EBV6
pgl-3
17
LLPS-Cae-0160
WBGene00004042
P34331
plk-1
18
LLPS-Cae-0746
WBGene00013766
Q9U2X0
prmt-1
19
LLPS-Cae-0211
WBGene00004416
P49405
rpl-5
20
LLPS-Cae-2143
WBGene00010808
G5EC37
sepa-1
21
LLPS-Cae-2117
WBGene00004955
P91349
spd-5
22
LLPS-Cae-0288
WBGene00015943
Q95QV8
tiar-1
23
LLPS-Cae-2151
WBGene00012904
Q9U2F5
tiar-2
24
LLPS-Cae-0262
WBGene00022046
Q9TYK1
Y66H1A.4
25
LLPS-Cae-0079
WBGene00006994
G5EEM5
zyg-9
26
LLPS-Cae-0535
WBGene00020142
Q95ZQ4
aak-2
27
LLPS-Cae-0311
WBGene00000099
O01427
air-2
28
LLPS-Cae-0381
WBGene00017547
Q95QK5
alfa-1
29
LLPS-Cae-1168
WBGene00000106
O16720
alg-2
30
LLPS-Cae-1099
WBGene00000123
P16356
ama-1
31
LLPS-Cae-0633
WBGene00000408
G5EFV5
cdk-7
32
LLPS-Cae-1278
WBGene00011059
O62337
CELE_R06C1.4
33
LLPS-Cae-1008
WBGene00020970
A0A1T5HV05
CELE_W03A5.6
34
LLPS-Cae-1875
WBGene00000507
P34425
cit-1.1
35
LLPS-Cae-0933
WBGene00010405
O45622
erfa-3
36
LLPS-Cae-1412
WBGene00018367
P34416
F42H10.3
37
LLPS-Cae-1074
WBGene00001516
Q8MLZ5
gap-2
38
LLPS-Cae-0814
WBGene00002066
Q21531
ifg-1
39
LLPS-Cae-0543
WBGene00002075
Q9BIB8
imb-1
40
LLPS-Cae-1012
WBGene00002076
A0A131MBF9
imb-2
41
LLPS-Cae-1365
WBGene00002879
P34346
let-754
42
LLPS-Cae-1908
WBGene00002981
Q23536
lgg-2
43
LLPS-Cae-0801
WBGene00003078
Q19952
lsm-4
44
LLPS-Cae-1361
WBGene00003172
G5ECJ4
mec-8
45
LLPS-Cae-1382
WBGene00003596
Q9XXN4
ngp-1
46
LLPS-Cae-1641
WBGene00003797
O01576
npp-11
47
LLPS-Cae-1033
WBGene00004207
Q18999
ptb-1
48
LLPS-Cae-1290
WBGene00004439
Q20647
rpl-25.2
49
LLPS-Cae-1792
WBGene00004947
Q9N5D3
sos-1
50
LLPS-Cae-0881
WBGene00012516
Q9XXG8
sqst-4
51
LLPS-Cae-1217
WBGene00007750
Q9U3P2
syg-2
52
LLPS-Cae-1723
WBGene00006367
Q22708
sym-2
53
LLPS-Cae-1814
WBGene00006514
D0VWM8
tdp-1
54
LLPS-Cae-0778
WBGene00019163
Q8WTJ4
ubxn-6
55
LLPS-Cae-1371
WBGene00002078
Q23089
xpo-1
56
LLPS-Cae-1877
WBGene00022765
Q23525
ZK546.14
57
LLPS-Cae-1029
WBGene00007105
Q9U3S8
znf-207