LLPS-Tru-0931
LSM1
Integrated Annotations
▼ OVERVIEW
Status: | Unreviewed |
Protein Name: | U6 snRNA-associated Sm-like protein LSm1 |
Gene Name: | LSM1, TRIUR3_19815 |
Ensembl Gene: | TRIUR3_19815 |
Ensembl Protein: | TRIUR3_19815-P1 |
Organism: | Triticum urartu |
Taxa ID: | 4572 |
LLPS Type: | LLPS regulator |
▼ Classification
Condensates:
Condensate | Evidence | Orthologs |
---|---|---|
P-body, Stress granule | Predicted from orthologs | (View) |
▼ FUNCTION
Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. |
▼ CROSS REFERENCE
Database | Nucleotide ID | Protein ID |
---|---|---|
Ensembl | TRIUR3_19815-T1 | TRIUR3_19815-P1 |
UniProt | M8AV26, M8AV26_TRIUA | |
GeneBank | KD050893 | EMS64899.1 |
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 MSWAGPDEIL LSTSLAGFLD KKLIVLLRDG RKLLGTLCSF DQFANVVLQG ACERVIVGEL 60 61 YCDVPLGLYV IRGENVVLIG ELDREKDELP SHMTCVSEAE IRTLKM 106 |
Nucleotide CDS Sequence (FASTA) |
1 ATGTCTTGGG CCGGGCCCGA CGAGATCCTC CTCTCCACCT CCCTGGCCGG CTTCTTAGAT 60 61 AAAAAACTTA TTGTCCTACT ACGAGATGGA CGAAAGCTGC TTGGCACTCT CTGCTCATTC 120 121 GATCAGTTTG CAAATGTTGT TCTTCAGGGT GCTTGTGAAC GAGTAATTGT GGGCGAATTA 180 181 TATTGTGATG TTCCTCTTGG TTTATATGTG ATCCGCGGAG AGAATGTTGT ATTAATTGGA 240 241 GAACTGGATC GCGAGAAGGA CGAACTCCCT AGTCACATGA CTTGTGTTTC AGAGGCTGAA 300 301 ATAAGAACGC TAAAGATGTA A 321 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Lsm1-7-Pat1 complex | |
Cellular Component | MRNA cap binding complex | |
Cellular Component | P-body | |
Molecular Function | RNA cap binding | |
Biological Process | Cold acclimation | |
Biological Process | Deadenylation-dependent decapping of nuclear-transcribed mRNA | |
Biological Process | Hyperosmotic salinity response | |
Biological Process | MRNA processing | |
Biological Process | Response to water deprivation |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Tra-1117 | Triticum aestivum | 100.0 | 5e-69 | 209 |
LLPS-Brd-2408 | Brachypodium distachyon | 98.06 | 4e-68 | 207 |
LLPS-Orp-1768 | Oryza punctata | 98.04 | 2e-67 | 205 |
LLPS-Sei-0886 | Setaria italica | 98.04 | 4e-67 | 204 |
LLPS-Ors-1697 | Oryza sativa | 98.02 | 1e-66 | 203 |
LLPS-Orr-0078 | Oryza rufipogon | 98.02 | 1e-66 | 203 |
LLPS-Orm-0978 | Oryza meridionalis | 98.02 | 8e-67 | 205 |
LLPS-Orb-0414 | Oryza barthii | 98.02 | 1e-66 | 203 |
LLPS-Ori-0575 | Oryza indica | 98.02 | 1e-66 | 203 |
LLPS-Sob-0709 | Sorghum bicolor | 95.1 | 2e-65 | 200 |
LLPS-Zem-1269 | Zea mays | 93.14 | 2e-63 | 195 |
LLPS-Orbr-1069 | Oryza brachyantha | 91.74 | 2e-64 | 197 |
LLPS-Hov-1731 | Hordeum vulgare | 89.58 | 1e-52 | 168 |
LLPS-Met-0604 | Medicago truncatula | 86.27 | 5e-57 | 179 |
LLPS-Gor-0366 | Gossypium raimondii | 85.29 | 4e-57 | 179 |
LLPS-Thc-0645 | Theobroma cacao | 85.29 | 8e-57 | 178 |
LLPS-Phv-0537 | Phaseolus vulgaris | 82.35 | 7e-56 | 176 |
LLPS-Mae-1279 | Manihot esculenta | 81.37 | 2e-54 | 172 |
LLPS-Nia-1770 | Nicotiana attenuata | 81.37 | 4e-55 | 174 |
LLPS-Viv-0304 | Vitis vinifera | 81.37 | 5e-54 | 171 |
LLPS-Art-2649 | Arabidopsis thaliana | 81.37 | 2e-55 | 175 |
LLPS-Pot-1543 | Populus trichocarpa | 81.37 | 4e-54 | 171 |
LLPS-Hea-0704 | Helianthus annuus | 81.37 | 5e-54 | 171 |
LLPS-Mua-0262 | Musa acuminata | 81.37 | 6e-55 | 174 |
LLPS-Glm-0137 | Glycine max | 81.37 | 3e-55 | 174 |
LLPS-Sol-1874 | Solanum lycopersicum | 81.37 | 4e-55 | 174 |
LLPS-Coc-0647 | Corchorus capsularis | 80.41 | 2e-47 | 162 |
LLPS-Amt-0547 | Amborella trichopoda | 80.39 | 6e-54 | 171 |
LLPS-Sot-0918 | Solanum tuberosum | 80.39 | 8e-54 | 171 |
LLPS-Arl-0799 | Arabidopsis lyrata | 79.41 | 1e-53 | 170 |
LLPS-Prp-0821 | Prunus persica | 79.05 | 2e-55 | 175 |
LLPS-Brr-0563 | Brassica rapa | 77.45 | 2e-53 | 170 |
LLPS-Brn-3017 | Brassica napus | 77.45 | 2e-53 | 170 |
LLPS-Dac-1176 | Daucus carota | 76.92 | 2e-50 | 162 |
LLPS-Bro-0533 | Brassica oleracea | 76.47 | 5e-52 | 166 |
LLPS-Cus-0267 | Cucumis sativus | 75.49 | 6e-50 | 161 |
LLPS-Php-0176 | Physcomitrella patens | 71.57 | 3e-45 | 149 |
LLPS-Orni-1215 | Oryza nivara | 71.43 | 2e-43 | 144 |
LLPS-Orgl-1858 | Oryza glumaepatula | 71.43 | 2e-43 | 144 |
LLPS-Sem-0588 | Selaginella moellendorffii | 70.59 | 3e-46 | 151 |
LLPS-Via-1044 | Vigna angularis | 63.11 | 3e-45 | 149 |
LLPS-Abg-0863 | Absidia glauca | 63.08 | 1e-22 | 90.9 |
LLPS-Drm-0601 | Drosophila melanogaster | 60.49 | 9e-25 | 96.7 |
LLPS-Osl-0053 | Ostreococcus lucimarinus | 58.67 | 2e-25 | 98.6 |
LLPS-Cii-1671 | Ciona intestinalis | 58.44 | 5e-23 | 92.0 |
LLPS-Meg-1340 | Meleagris gallopavo | 57.89 | 5e-23 | 92.0 |
LLPS-Gaga-0302 | Gallus gallus | 57.89 | 5e-23 | 92.0 |
LLPS-Scc-0072 | Schizosaccharomyces cryophilus | 57.89 | 4e-24 | 95.1 |
LLPS-Zyt-1376 | Zymoseptoria tritici | 57.81 | 1e-18 | 80.5 |
LLPS-Chr-0523 | Chlamydomonas reinhardtii | 56.99 | 3e-29 | 108 |
LLPS-Icp-2370 | Ictalurus punctatus | 56.58 | 3e-22 | 90.1 |
LLPS-Leo-0534 | Lepisosteus oculatus | 56.58 | 3e-22 | 90.1 |
LLPS-Scp-0048 | Schizosaccharomyces pombe | 56.58 | 4e-24 | 95.1 |
LLPS-Scf-2706 | Scleropages formosus | 56.58 | 8e-23 | 91.7 |
LLPS-Ict-1483 | Ictidomys tridecemlineatus | 56.0 | 1e-20 | 84.3 |
LLPS-Dar-0293 | Danio rerio | 55.26 | 1e-21 | 88.2 |
LLPS-Asm-1087 | Astyanax mexicanus | 55.26 | 1e-21 | 88.2 |
LLPS-Xet-0133 | Xenopus tropicalis | 55.0 | 8e-21 | 86.3 |
LLPS-Lac-2562 | Latimeria chalumnae | 54.32 | 1e-22 | 90.9 |
LLPS-Usm-0789 | Ustilago maydis | 54.12 | 1e-23 | 94.0 |
LLPS-Mao-0298 | Magnaporthe oryzae | 54.05 | 5e-17 | 77.0 |
LLPS-Scj-0711 | Schizosaccharomyces japonicus | 53.95 | 1e-21 | 89.0 |
LLPS-Orn-2110 | Oreochromis niloticus | 53.33 | 4e-21 | 87.0 |
LLPS-Pof-2024 | Poecilia formosa | 53.33 | 5e-21 | 86.7 |
LLPS-Scm-1083 | Scophthalmus maximus | 53.33 | 7e-21 | 86.7 |
LLPS-Ten-3174 | Tetraodon nigroviridis | 53.33 | 6e-21 | 86.7 |
LLPS-Orl-0368 | Oryzias latipes | 53.33 | 6e-21 | 86.7 |
LLPS-Xim-0643 | Xiphophorus maculatus | 53.33 | 6e-21 | 86.7 |
LLPS-Tar-2363 | Takifugu rubripes | 53.33 | 3e-20 | 85.5 |
LLPS-Gaa-1715 | Gasterosteus aculeatus | 53.33 | 4e-21 | 87.4 |
LLPS-Fia-1356 | Ficedula albicollis | 53.16 | 4e-21 | 86.7 |
LLPS-Pes-0131 | Pelodiscus sinensis | 53.09 | 4e-21 | 87.0 |
LLPS-Spr-1250 | Sporisorium reilianum | 52.94 | 3e-23 | 93.2 |
LLPS-Map-0895 | Magnaporthe poae | 52.7 | 1e-17 | 79.0 |
LLPS-Gag-0579 | Gaeumannomyces graminis | 52.7 | 1e-17 | 79.3 |
LLPS-Pug-0665 | Puccinia graminis | 52.56 | 5e-19 | 81.6 |
LLPS-Otg-1601 | Otolemur garnettii | 52.27 | 3e-23 | 92.4 |
LLPS-Orc-0306 | Oryctolagus cuniculus | 52.27 | 3e-23 | 92.4 |
LLPS-Rhb-0060 | Rhinopithecus bieti | 52.27 | 3e-23 | 92.4 |
LLPS-Hos-0291 | Homo sapiens | 52.27 | 3e-23 | 92.4 |
LLPS-Pat-1612 | Pan troglodytes | 52.27 | 3e-23 | 92.4 |
LLPS-Urm-1462 | Ursus maritimus | 52.27 | 3e-23 | 92.4 |
LLPS-Pap-1406 | Pan paniscus | 52.27 | 3e-23 | 92.4 |
LLPS-Mod-1732 | Monodelphis domestica | 52.27 | 2e-23 | 93.2 |
LLPS-Fec-1663 | Felis catus | 52.27 | 3e-23 | 92.4 |
LLPS-Loa-0012 | Loxodonta africana | 52.27 | 3e-23 | 92.4 |
LLPS-Cas-0238 | Carlito syrichta | 52.27 | 3e-23 | 92.4 |
LLPS-Nol-0100 | Nomascus leucogenys | 52.27 | 3e-23 | 92.4 |
LLPS-Tag-0051 | Taeniopygia guttata | 52.27 | 2e-23 | 93.6 |
LLPS-Poa-2737 | Pongo abelii | 52.27 | 3e-23 | 92.4 |
LLPS-Caf-0769 | Canis familiaris | 52.27 | 3e-23 | 92.4 |
LLPS-Cap-0167 | Cavia porcellus | 52.27 | 3e-23 | 92.4 |
LLPS-Eqc-3245 | Equus caballus | 52.27 | 4e-23 | 92.4 |
LLPS-Gog-1891 | Gorilla gorilla | 52.27 | 3e-23 | 92.4 |
LLPS-Fud-0635 | Fukomys damarensis | 52.27 | 3e-23 | 92.4 |
LLPS-Caj-2288 | Callithrix jacchus | 52.27 | 3e-23 | 92.8 |
LLPS-Maf-1355 | Macaca fascicularis | 52.27 | 3e-23 | 92.4 |
LLPS-Mum-3199 | Mus musculus | 52.27 | 3e-23 | 92.4 |
LLPS-Chs-1943 | Chlorocebus sabaeus | 52.27 | 3e-23 | 92.4 |
LLPS-Ora-1014 | Ornithorhynchus anatinus | 52.27 | 2e-23 | 93.2 |
LLPS-Sus-2572 | Sus scrofa | 52.27 | 4e-23 | 92.4 |
LLPS-Cea-0018 | Cercocebus atys | 52.27 | 3e-23 | 92.4 |
LLPS-Sah-1994 | Sarcophilus harrisii | 52.27 | 2e-23 | 93.2 |
LLPS-Aon-2361 | Aotus nancymaae | 52.27 | 3e-23 | 92.4 |
LLPS-Ran-2587 | Rattus norvegicus | 52.27 | 5e-23 | 92.0 |
LLPS-Paa-1027 | Papio anubis | 52.27 | 3e-23 | 92.4 |
LLPS-Mal-1107 | Mandrillus leucophaeus | 52.27 | 3e-23 | 92.4 |
LLPS-Mup-1062 | Mustela putorius furo | 52.27 | 3e-23 | 92.8 |
LLPS-Aim-0875 | Ailuropoda melanoleuca | 52.27 | 3e-23 | 92.4 |
LLPS-Myl-3288 | Myotis lucifugus | 52.27 | 3e-23 | 92.8 |
LLPS-Ova-0040 | Ovis aries | 52.27 | 3e-23 | 92.4 |
LLPS-Tut-1594 | Tursiops truncatus | 52.27 | 3e-23 | 92.4 |
LLPS-Dio-0030 | Dipodomys ordii | 52.27 | 3e-23 | 92.4 |
LLPS-Bot-1262 | Bos taurus | 52.27 | 3e-23 | 92.8 |
LLPS-Nec-1084 | Neurospora crassa | 51.85 | 9e-17 | 76.6 |
LLPS-Blg-0023 | Blumeria graminis | 51.81 | 1e-21 | 89.7 |
LLPS-Fus-0894 | Fusarium solani | 50.0 | 3e-16 | 75.1 |
LLPS-Scs-0047 | Sclerotinia sclerotiorum | 50.0 | 5e-17 | 77.0 |
LLPS-Ere-0055 | Erinaceus europaeus | 50.0 | 2e-20 | 84.7 |
LLPS-Ast-0785 | Aspergillus terreus | 49.5 | 2e-27 | 104 |
LLPS-Gas-0597 | Galdieria sulphuraria | 49.41 | 3e-22 | 90.9 |
LLPS-Kop-0784 | Komagataella pastoris | 49.32 | 5e-18 | 79.3 |
LLPS-Dos-0670 | Dothistroma septosporum | 48.75 | 2e-18 | 80.9 |
LLPS-Asni-0298 | Aspergillus niger | 48.51 | 7e-27 | 102 |
LLPS-Cae-1457 | Caenorhabditis elegans | 48.51 | 3e-20 | 84.7 |
LLPS-Cym-0531 | Cyanidioschyzon merolae | 48.48 | 3e-22 | 89.7 |
LLPS-Mel-0204 | Melampsora laricipopulina | 47.73 | 3e-18 | 80.1 |
LLPS-Chc-0229 | Chondrus crispus | 47.57 | 2e-22 | 92.0 |
LLPS-Nef-0665 | Neosartorya fischeri | 47.52 | 2e-26 | 102 |
LLPS-Asfu-1099 | Aspergillus fumigatus | 47.52 | 2e-26 | 102 |
LLPS-Miv-0151 | Microbotryum violaceum | 47.3 | 5e-15 | 71.6 |
LLPS-Cogr-1311 | Colletotrichum graminicola | 46.84 | 1e-14 | 69.3 |
LLPS-Asc-1161 | Aspergillus clavatus | 46.53 | 2e-25 | 99.8 |
LLPS-Cog-0263 | Colletotrichum gloeosporioides | 46.34 | 7e-16 | 73.9 |
LLPS-Fuo-0031 | Fusarium oxysporum | 46.34 | 3e-16 | 75.1 |
LLPS-Fuv-0350 | Fusarium verticillioides | 46.34 | 3e-16 | 75.1 |
LLPS-Crn-1182 | Cryptococcus neoformans | 45.56 | 3e-17 | 76.6 |
LLPS-Asf-0439 | Aspergillus flavus | 45.54 | 6e-24 | 95.5 |
LLPS-Coo-0716 | Colletotrichum orbiculare | 45.45 | 7e-17 | 76.6 |
LLPS-Yal-0828 | Yarrowia lipolytica | 44.87 | 2e-14 | 69.7 |
LLPS-Lem-0792 | Leptosphaeria maculans | 44.58 | 9e-12 | 62.8 |
LLPS-Asg-0665 | Ashbya gossypii | 44.32 | 8e-18 | 79.0 |
LLPS-Sac-0224 | Saccharomyces cerevisiae | 44.32 | 5e-18 | 79.7 |
LLPS-Trr-0377 | Trichoderma reesei | 43.62 | 1e-19 | 84.3 |
LLPS-Trv-1492 | Trichoderma virens | 41.77 | 2e-12 | 63.5 |
LLPS-Man-2442 | Macaca nemestrina | 39.74 | 1e-13 | 66.6 |
LLPS-Mea-4477 | Mesocricetus auratus | 39.74 | 2e-13 | 65.9 |
LLPS-Mam-0071 | Macaca mulatta | 39.53 | 2e-13 | 68.2 |
LLPS-Lep-0325 | Leersia perrieri | 39.53 | 2e-11 | 61.6 |
LLPS-Beb-0378 | Beauveria bassiana | 37.17 | 1e-17 | 79.3 |
LLPS-Pyt-0274 | Pyrenophora teres | 35.96 | 1e-11 | 62.8 |