• Disorder
  • Domain
  • PTM
  • Variation
  • Mutation
  • Interaction
  • Disease
  • Drug
  • Physicochemical
  • Function
  • Proteomics
  • Structure
  • Localization
  • Expression
  • Element
  • Methylation

LLPS-Tru-0931
LSM1

Integrated Annotations

▼ OVERVIEW


Status: Unreviewed
Protein Name: U6 snRNA-associated Sm-like protein LSm1
Gene Name: LSM1, TRIUR3_19815
Ensembl Gene: TRIUR3_19815
Ensembl Protein: TRIUR3_19815-P1
Organism: Triticum urartu
Taxa ID: 4572
LLPS Type: LLPS regulator


▼ PROPERTY



——— Disorder propensity (calculated by IUPred2A)

▼ Classification


Condensates:
CondensateEvidenceOrthologs
P-body, Stress granulePredicted from orthologs(View)

▼ FUNCTION


Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.

▼ CROSS REFERENCE


DatabaseNucleotide IDProtein ID
EnsemblTRIUR3_19815-T1TRIUR3_19815-P1
UniProtM8AV26, M8AV26_TRIUA
GeneBankKD050893EMS64899.1

▼ SEQUENCE


Protein Sequence (FASTA)
1     MSWAGPDEIL  LSTSLAGFLD  KKLIVLLRDG  RKLLGTLCSF  DQFANVVLQG  ACERVIVGEL  60
61    YCDVPLGLYV  IRGENVVLIG  ELDREKDELP  SHMTCVSEAE  IRTLKM  106
Nucleotide CDS Sequence (FASTA)
1     ATGTCTTGGG  CCGGGCCCGA  CGAGATCCTC  CTCTCCACCT  CCCTGGCCGG  CTTCTTAGAT  60
61    AAAAAACTTA  TTGTCCTACT  ACGAGATGGA  CGAAAGCTGC  TTGGCACTCT  CTGCTCATTC  120
121   GATCAGTTTG  CAAATGTTGT  TCTTCAGGGT  GCTTGTGAAC  GAGTAATTGT  GGGCGAATTA  180
181   TATTGTGATG  TTCCTCTTGG  TTTATATGTG  ATCCGCGGAG  AGAATGTTGT  ATTAATTGGA  240
241   GAACTGGATC  GCGAGAAGGA  CGAACTCCCT  AGTCACATGA  CTTGTGTTTC  AGAGGCTGAA  300
301   ATAAGAACGC  TAAAGATGTA  A  321

▼ KEYWORD


ID
Family
Complete proteome
Cytoplasm
mRNA processing
Reference proteome
Ribonucleoprotein
RNA-binding

▼ GENE ONTOLOGY


ID
Classification
Description
Cellular Component
Lsm1-7-Pat1 complex
Cellular Component
MRNA cap binding complex
Cellular Component
P-body
Molecular Function
RNA cap binding
Biological Process
Cold acclimation
Biological Process
Deadenylation-dependent decapping of nuclear-transcribed mRNA
Biological Process
Hyperosmotic salinity response
Biological Process
MRNA processing
Biological Process
Response to water deprivation

▼ ORTHOLOGY


DrLLPS IDOrganismIdentityE-valueScore
LLPS-Tra-1117Triticum aestivum100.05e-69 209
LLPS-Brd-2408Brachypodium distachyon98.064e-68 207
LLPS-Orp-1768Oryza punctata98.042e-67 205
LLPS-Sei-0886Setaria italica98.044e-67 204
LLPS-Ors-1697Oryza sativa98.021e-66 203
LLPS-Orr-0078Oryza rufipogon98.021e-66 203
LLPS-Orm-0978Oryza meridionalis98.028e-67 205
LLPS-Orb-0414Oryza barthii98.021e-66 203
LLPS-Ori-0575Oryza indica98.021e-66 203
LLPS-Sob-0709Sorghum bicolor95.12e-65 200
LLPS-Zem-1269Zea mays93.142e-63 195
LLPS-Orbr-1069Oryza brachyantha91.742e-64 197
LLPS-Hov-1731Hordeum vulgare89.581e-52 168
LLPS-Met-0604Medicago truncatula86.275e-57 179
LLPS-Gor-0366Gossypium raimondii85.294e-57 179
LLPS-Thc-0645Theobroma cacao85.298e-57 178
LLPS-Phv-0537Phaseolus vulgaris82.357e-56 176
LLPS-Mae-1279Manihot esculenta81.372e-54 172
LLPS-Nia-1770Nicotiana attenuata81.374e-55 174
LLPS-Viv-0304Vitis vinifera81.375e-54 171
LLPS-Art-2649Arabidopsis thaliana81.372e-55 175
LLPS-Pot-1543Populus trichocarpa81.374e-54 171
LLPS-Hea-0704Helianthus annuus81.375e-54 171
LLPS-Mua-0262Musa acuminata81.376e-55 174
LLPS-Glm-0137Glycine max81.373e-55 174
LLPS-Sol-1874Solanum lycopersicum81.374e-55 174
LLPS-Coc-0647Corchorus capsularis80.412e-47 162
LLPS-Amt-0547Amborella trichopoda80.396e-54 171
LLPS-Sot-0918Solanum tuberosum80.398e-54 171
LLPS-Arl-0799Arabidopsis lyrata79.411e-53 170
LLPS-Prp-0821Prunus persica79.052e-55 175
LLPS-Brr-0563Brassica rapa77.452e-53 170
LLPS-Brn-3017Brassica napus77.452e-53 170
LLPS-Dac-1176Daucus carota76.922e-50 162
LLPS-Bro-0533Brassica oleracea76.475e-52 166
LLPS-Cus-0267Cucumis sativus75.496e-50 161
LLPS-Php-0176Physcomitrella patens71.573e-45 149
LLPS-Orni-1215Oryza nivara71.432e-43 144
LLPS-Orgl-1858Oryza glumaepatula71.432e-43 144
LLPS-Sem-0588Selaginella moellendorffii70.593e-46 151
LLPS-Via-1044Vigna angularis63.113e-45 149
LLPS-Abg-0863Absidia glauca63.081e-2290.9
LLPS-Drm-0601Drosophila melanogaster60.499e-2596.7
LLPS-Osl-0053Ostreococcus lucimarinus58.672e-2598.6
LLPS-Cii-1671Ciona intestinalis58.445e-2392.0
LLPS-Meg-1340Meleagris gallopavo57.895e-2392.0
LLPS-Gaga-0302Gallus gallus57.895e-2392.0
LLPS-Scc-0072Schizosaccharomyces cryophilus57.894e-2495.1
LLPS-Zyt-1376Zymoseptoria tritici57.811e-1880.5
LLPS-Chr-0523Chlamydomonas reinhardtii56.993e-29 108
LLPS-Icp-2370Ictalurus punctatus56.583e-2290.1
LLPS-Leo-0534Lepisosteus oculatus56.583e-2290.1
LLPS-Scp-0048Schizosaccharomyces pombe56.584e-2495.1
LLPS-Scf-2706Scleropages formosus56.588e-2391.7
LLPS-Ict-1483Ictidomys tridecemlineatus56.01e-2084.3
LLPS-Dar-0293Danio rerio55.261e-2188.2
LLPS-Asm-1087Astyanax mexicanus55.261e-2188.2
LLPS-Xet-0133Xenopus tropicalis55.08e-2186.3
LLPS-Lac-2562Latimeria chalumnae54.321e-2290.9
LLPS-Usm-0789Ustilago maydis54.121e-2394.0
LLPS-Mao-0298Magnaporthe oryzae54.055e-1777.0
LLPS-Scj-0711Schizosaccharomyces japonicus53.951e-2189.0
LLPS-Orn-2110Oreochromis niloticus53.334e-2187.0
LLPS-Pof-2024Poecilia formosa53.335e-2186.7
LLPS-Scm-1083Scophthalmus maximus53.337e-2186.7
LLPS-Ten-3174Tetraodon nigroviridis53.336e-2186.7
LLPS-Orl-0368Oryzias latipes53.336e-2186.7
LLPS-Xim-0643Xiphophorus maculatus53.336e-2186.7
LLPS-Tar-2363Takifugu rubripes53.333e-2085.5
LLPS-Gaa-1715Gasterosteus aculeatus53.334e-2187.4
LLPS-Fia-1356Ficedula albicollis53.164e-2186.7
LLPS-Pes-0131Pelodiscus sinensis53.094e-2187.0
LLPS-Spr-1250Sporisorium reilianum52.943e-2393.2
LLPS-Map-0895Magnaporthe poae52.71e-1779.0
LLPS-Gag-0579Gaeumannomyces graminis52.71e-1779.3
LLPS-Pug-0665Puccinia graminis52.565e-1981.6
LLPS-Otg-1601Otolemur garnettii52.273e-2392.4
LLPS-Orc-0306Oryctolagus cuniculus52.273e-2392.4
LLPS-Rhb-0060Rhinopithecus bieti52.273e-2392.4
LLPS-Hos-0291Homo sapiens52.273e-2392.4
LLPS-Pat-1612Pan troglodytes52.273e-2392.4
LLPS-Urm-1462Ursus maritimus52.273e-2392.4
LLPS-Pap-1406Pan paniscus52.273e-2392.4
LLPS-Mod-1732Monodelphis domestica52.272e-2393.2
LLPS-Fec-1663Felis catus52.273e-2392.4
LLPS-Loa-0012Loxodonta africana52.273e-2392.4
LLPS-Cas-0238Carlito syrichta52.273e-2392.4
LLPS-Nol-0100Nomascus leucogenys52.273e-2392.4
LLPS-Tag-0051Taeniopygia guttata52.272e-2393.6
LLPS-Poa-2737Pongo abelii52.273e-2392.4
LLPS-Caf-0769Canis familiaris52.273e-2392.4
LLPS-Cap-0167Cavia porcellus52.273e-2392.4
LLPS-Eqc-3245Equus caballus52.274e-2392.4
LLPS-Gog-1891Gorilla gorilla52.273e-2392.4
LLPS-Fud-0635Fukomys damarensis52.273e-2392.4
LLPS-Caj-2288Callithrix jacchus52.273e-2392.8
LLPS-Maf-1355Macaca fascicularis52.273e-2392.4
LLPS-Mum-3199Mus musculus52.273e-2392.4
LLPS-Chs-1943Chlorocebus sabaeus52.273e-2392.4
LLPS-Ora-1014Ornithorhynchus anatinus52.272e-2393.2
LLPS-Sus-2572Sus scrofa52.274e-2392.4
LLPS-Cea-0018Cercocebus atys52.273e-2392.4
LLPS-Sah-1994Sarcophilus harrisii52.272e-2393.2
LLPS-Aon-2361Aotus nancymaae52.273e-2392.4
LLPS-Ran-2587Rattus norvegicus52.275e-2392.0
LLPS-Paa-1027Papio anubis52.273e-2392.4
LLPS-Mal-1107Mandrillus leucophaeus52.273e-2392.4
LLPS-Mup-1062Mustela putorius furo52.273e-2392.8
LLPS-Aim-0875Ailuropoda melanoleuca52.273e-2392.4
LLPS-Myl-3288Myotis lucifugus52.273e-2392.8
LLPS-Ova-0040Ovis aries52.273e-2392.4
LLPS-Tut-1594Tursiops truncatus52.273e-2392.4
LLPS-Dio-0030Dipodomys ordii52.273e-2392.4
LLPS-Bot-1262Bos taurus52.273e-2392.8
LLPS-Nec-1084Neurospora crassa51.859e-1776.6
LLPS-Blg-0023Blumeria graminis51.811e-2189.7
LLPS-Fus-0894Fusarium solani50.03e-1675.1
LLPS-Scs-0047Sclerotinia sclerotiorum50.05e-1777.0
LLPS-Ere-0055Erinaceus europaeus50.02e-2084.7
LLPS-Ast-0785Aspergillus terreus49.52e-27 104
LLPS-Gas-0597Galdieria sulphuraria49.413e-2290.9
LLPS-Kop-0784Komagataella pastoris49.325e-1879.3
LLPS-Dos-0670Dothistroma septosporum48.752e-1880.9
LLPS-Asni-0298Aspergillus niger48.517e-27 102
LLPS-Cae-1457Caenorhabditis elegans48.513e-2084.7
LLPS-Cym-0531Cyanidioschyzon merolae48.483e-2289.7
LLPS-Mel-0204Melampsora laricipopulina47.733e-1880.1
LLPS-Chc-0229Chondrus crispus47.572e-2292.0
LLPS-Nef-0665Neosartorya fischeri47.522e-26 102
LLPS-Asfu-1099Aspergillus fumigatus47.522e-26 102
LLPS-Miv-0151Microbotryum violaceum47.35e-1571.6
LLPS-Cogr-1311Colletotrichum graminicola46.841e-1469.3
LLPS-Asc-1161Aspergillus clavatus46.532e-2599.8
LLPS-Cog-0263Colletotrichum gloeosporioides46.347e-1673.9
LLPS-Fuo-0031Fusarium oxysporum46.343e-1675.1
LLPS-Fuv-0350Fusarium verticillioides46.343e-1675.1
LLPS-Crn-1182Cryptococcus neoformans45.563e-1776.6
LLPS-Asf-0439Aspergillus flavus45.546e-2495.5
LLPS-Coo-0716Colletotrichum orbiculare45.457e-1776.6
LLPS-Yal-0828Yarrowia lipolytica44.872e-1469.7
LLPS-Lem-0792Leptosphaeria maculans44.589e-1262.8
LLPS-Asg-0665Ashbya gossypii44.328e-1879.0
LLPS-Sac-0224Saccharomyces cerevisiae44.325e-1879.7
LLPS-Trr-0377Trichoderma reesei43.621e-1984.3
LLPS-Trv-1492Trichoderma virens41.772e-1263.5
LLPS-Man-2442Macaca nemestrina39.741e-1366.6
LLPS-Mea-4477Mesocricetus auratus39.742e-1365.9
LLPS-Mam-0071Macaca mulatta39.532e-1368.2
LLPS-Lep-0325Leersia perrieri39.532e-1161.6
LLPS-Beb-0378Beauveria bassiana37.171e-1779.3
LLPS-Pyt-0274Pyrenophora teres35.961e-1162.8