DrLLPS - Data resource of LLPS

LLPS-Chc-0229
LSM1

Integrated Annotations

▼ OVERVIEW


Status:	Unreviewed
Protein Name:	U6 snRNA-associated Sm-like protein LSm1
Gene Name:	LSM1, CHC_T00003928001
Ensembl Gene:	CHC_T00003928001
Ensembl Protein:	CDF35274
Organism:	Chondrus crispus
Taxa ID:	2769
LLPS Type:	LLPS regulator

▼ PROPERTY

——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:

Condensate	Evidence	Orthologs
P-body, Stress granule	Predicted from orthologs	(View)

Organism	DrLLPS ID	UniProt ID	LLPS type	Condensate	Identity	E-value	Score
Saccharomyces cerevisiae	LLPS-Sac-0224	P47017	Regulator	P-body, Stress granule	48.86	7e-19	84.7
Homo sapiens	LLPS-Hos-0291	O15116	Regulator	P-body, Stress granule	56.38	1e-27	107
Schizosaccharomyces pombe	LLPS-Scp-0048	P87173	Client	P-body	38.98	1e-22	94.0

▼ FUNCTION

Probably involved with other LSm subunits in the general process of degradation of mRNAs.

▼ CROSS REFERENCE

Database	Nucleotide ID	Protein ID
Ensembl	CDF35274	CDF35274
UniProt		R7QB24, R7QB24_CHOCR
GeneBank	HG001726	CDF35274.1
RefSeq	XM_005715036.1	XP_005715093.1

▼ SEQUENCE

Protein Sequence (FASTA)
1 MVLFCSDIGV AIFSICFFSD PDSSTALHFE IVPYLRKRRS TDYTRKLSAH IYKELNGCSH 60 61 SVLRCDMTSR GGRGPSGRSE ETTQSGSGAI KLPGAASLYE QLDKLVLVCL RDGRNFFGWL 120 121 RSFDQYANLI LDNTVERLTV EDSYADVPIG IFVIRGENVM LLGEVDEERE LNVGSSMKQV 180 181 TEPEIRRALA AIKEDRAARR RGEKVEWPIP EEY 213
Nucleotide CDS Sequence (FASTA)
1 ATGGTACTGT TCTGCAGTGA CATCGGTGTT GCAATTTTTT CAATTTGTTT TTTCTCCGAC 60 61 CCAGACTCCT CGACAGCATT GCATTTTGAG ATTGTACCGT ATTTGCGAAA AAGGAGATCA 120 121 ACTGACTACA CTCGCAAACT CTCCGCACAC ATCTACAAAG AATTGAACGG TTGTTCACAT 180 181 TCAGTGCTGC GGTGTGACAT GACTTCACGA GGCGGACGTG GCCCTTCTGG GCGTTCTGAG 240 241 GAAACTACGC AATCCGGATC CGGAGCCATT AAGCTTCCTG GGGCGGCGAG TTTGTACGAA 300 301 CAGCTTGACA AACTTGTCCT CGTATGTCTG CGAGATGGGC GAAACTTCTT TGGCTGGCTA 360 361 CGATCTTTCG ATCAATACGC AAACCTGATT CTGGACAATA CGGTGGAGCG ACTTACAGTT 420 421 GAGGACTCTT ACGCCGATGT CCCGATCGGA ATTTTCGTCA TTCGGGGAGA GAACGTCATG 480 481 CTTCTTGGTG AGGTAGACGA AGAAAGGGAG CTAAACGTGG GTTCATCAAT GAAACAAGTC 540 541 ACAGAACCAG AGATCAGGAG GGCTTTGGCA GCTATTAAGG AGGATCGGGC AGCTAGGAGG 600 601 CGTGGAGAAA AGGTCGAGTG GCCAATCCCC GAGGAGTACT GA 642

▼ KEYWORD

ID	Family
KW-0181	Complete proteome
KW-0963	Cytoplasm
KW-0507	mRNA processing
KW-1185	Reference proteome
KW-0687	Ribonucleoprotein
KW-0694	RNA-binding

▼ GENE ONTOLOGY

ID	Classification	Description
GO:1990726	Cellular Component	Lsm1-7-Pat1 complex
GO:0005845	Cellular Component	MRNA cap binding complex
GO:0000932	Cellular Component	P-body
GO:0000339	Molecular Function	RNA cap binding
GO:0000290	Biological Process	Deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0006397	Biological Process	MRNA processing

▼ KEGG

ccp:CHC_T00003928001

▼ ORTHOLOGY

DrLLPS ID	Organism	Identity	E-value	Score
LLPS-Cii-1671	Ciona intestinalis	64.56	6e-27	105
LLPS-Ere-0055	Erinaceus europaeus	62.16	2e-24	98.2
LLPS-Ict-1483	Ictidomys tridecemlineatus	61.04	4e-25	99.4
LLPS-Dar-0293	Danio rerio	60.76	1e-25	102
LLPS-Icp-2370	Ictalurus punctatus	59.49	4e-25	100
LLPS-Dos-0670	Dothistroma septosporum	56.45	5e-17	79.7
LLPS-Fud-0635	Fukomys damarensis	56.38	1e-27	107
LLPS-Caj-2288	Callithrix jacchus	56.38	1e-27	107
LLPS-Gog-1891	Gorilla gorilla	56.38	1e-27	107
LLPS-Aon-2361	Aotus nancymaae	56.38	1e-27	107
LLPS-Cea-0018	Cercocebus atys	56.38	1e-27	107
LLPS-Sah-1994	Sarcophilus harrisii	56.38	5e-28	108
LLPS-Maf-1355	Macaca fascicularis	56.38	1e-27	107
LLPS-Mum-3199	Mus musculus	56.38	1e-27	107
LLPS-Ora-1014	Ornithorhynchus anatinus	56.38	3e-28	109
LLPS-Chs-1943	Chlorocebus sabaeus	56.38	1e-27	107
LLPS-Mal-1107	Mandrillus leucophaeus	56.38	1e-27	107
LLPS-Paa-1027	Papio anubis	56.38	1e-27	107
LLPS-Aim-0875	Ailuropoda melanoleuca	56.38	1e-27	107
LLPS-Mup-1062	Mustela putorius furo	56.38	1e-27	107
LLPS-Ova-0040	Ovis aries	56.38	1e-27	107
LLPS-Myl-3288	Myotis lucifugus	56.38	1e-27	107
LLPS-Ran-2587	Rattus norvegicus	56.38	2e-27	107
LLPS-Dio-0030	Dipodomys ordii	56.38	1e-27	107
LLPS-Bot-1262	Bos taurus	56.38	1e-27	107
LLPS-Tut-1594	Tursiops truncatus	56.38	1e-27	107
LLPS-Orc-0306	Oryctolagus cuniculus	56.38	1e-27	107
LLPS-Rhb-0060	Rhinopithecus bieti	56.38	1e-27	107
LLPS-Otg-1601	Otolemur garnettii	56.38	1e-27	107
LLPS-Loa-0012	Loxodonta africana	56.38	1e-27	107
LLPS-Hos-0291	Homo sapiens	56.38	1e-27	107
LLPS-Pat-1612	Pan troglodytes	56.38	1e-27	107
LLPS-Pap-1406	Pan paniscus	56.38	1e-27	107
LLPS-Urm-1462	Ursus maritimus	56.38	1e-27	107
LLPS-Mod-1732	Monodelphis domestica	56.38	5e-28	108
LLPS-Fec-1663	Felis catus	56.38	1e-27	107
LLPS-Nol-0100	Nomascus leucogenys	56.38	1e-27	107
LLPS-Cas-0238	Carlito syrichta	56.38	1e-27	107
LLPS-Poa-2737	Pongo abelii	56.38	1e-27	107
LLPS-Caf-0769	Canis familiaris	56.38	1e-27	107
LLPS-Cap-0167	Cavia porcellus	56.38	1e-27	107
LLPS-Eqc-3245	Equus caballus	56.38	1e-27	107
LLPS-Cym-0531	Cyanidioschyzon merolae	56.14	4e-33	122
LLPS-Leo-0534	Lepisosteus oculatus	55.56	2e-26	104
LLPS-Meg-1340	Meleagris gallopavo	55.32	4e-27	106
LLPS-Gaga-0302	Gallus gallus	55.32	4e-27	106
LLPS-Xet-0133	Xenopus tropicalis	54.08	5e-25	100
LLPS-Zyt-1376	Zymoseptoria tritici	53.97	3e-17	79.7
LLPS-Mua-0262	Musa acuminata	53.61	3e-25	101
LLPS-Cus-0267	Cucumis sativus	53.0	8e-26	102
LLPS-Pot-1543	Populus trichocarpa	53.0	4e-25	100
LLPS-Coc-0647	Corchorus capsularis	52.69	1e-22	98.2
LLPS-Amt-0547	Amborella trichopoda	52.58	8e-25	100
LLPS-Art-2659	Arabidopsis thaliana	52.48	2e-26	104
LLPS-Via-1044	Vigna angularis	52.38	1e-20	89.7
LLPS-Hea-1492	Helianthus annuus	52.13	1e-24	99.8
LLPS-Met-1714	Medicago truncatula	52.13	6e-24	97.8
LLPS-Mao-0298	Magnaporthe oryzae	52.11	5e-16	77.0
LLPS-Thc-0645	Theobroma cacao	52.0	2e-25	102
LLPS-Glm-0137	Glycine max	52.0	3e-25	101
LLPS-Phv-0404	Phaseolus vulgaris	52.0	3e-25	101
LLPS-Mae-1279	Manihot esculenta	52.0	3e-25	101
LLPS-Gor-0927	Gossypium raimondii	52.0	6e-25	100
LLPS-Php-0176	Physcomitrella patens	51.82	6e-27	105
LLPS-Sot-0682	Solanum tuberosum	51.55	7e-25	100
LLPS-Abg-0863	Absidia glauca	51.52	4e-24	97.8
LLPS-Brn-0131	Brassica napus	51.49	3e-26	103
LLPS-Arl-0904	Arabidopsis lyrata	51.49	2e-26	104
LLPS-Bro-0266	Brassica oleracea	51.49	3e-26	103
LLPS-Map-0895	Magnaporthe poae	51.22	2e-17	81.6
LLPS-Gag-0579	Gaeumannomyces graminis	51.22	1e-17	82.0
LLPS-Drm-0601	Drosophila melanogaster	51.06	6e-26	103
LLPS-Sem-0588	Selaginella moellendorffii	51.02	1e-25	102
LLPS-Nia-1770	Nicotiana attenuata	50.52	2e-24	99.4
LLPS-Sus-2572	Sus scrofa	50.43	5e-28	108
LLPS-Asg-0665	Ashbya gossypii	50.0	1e-17	81.3
LLPS-Sol-1874	Solanum lycopersicum	50.0	2e-24	99.4
LLPS-Viv-1237	Vitis vinifera	50.0	6e-25	100
LLPS-Brr-0563	Brassica rapa	50.0	9e-25	100
LLPS-Lac-2562	Latimeria chalumnae	50.0	7e-24	97.4
LLPS-Prp-0821	Prunus persica	50.0	4e-24	98.2
LLPS-Scf-2706	Scleropages formosus	49.56	9e-28	108
LLPS-Nec-1084	Neurospora crassa	49.38	2e-15	75.5
LLPS-Yal-0828	Yarrowia lipolytica	49.37	2e-15	75.1
LLPS-Sob-0709	Sorghum bicolor	49.02	2e-23	96.3
LLPS-Zem-1269	Zea mays	49.02	4e-23	95.5
LLPS-Dac-1176	Daucus carota	49.0	7e-24	97.8
LLPS-Fia-1356	Ficedula albicollis	49.0	1e-22	94.0
LLPS-Sac-0224	Saccharomyces cerevisiae	48.86	1e-18	84.7
LLPS-Coo-0716	Colletotrichum orbiculare	48.78	1e-16	79.3
LLPS-Fuv-0350	Fusarium verticillioides	48.78	2e-16	78.6
LLPS-Fuo-0031	Fusarium oxysporum	48.78	2e-16	78.2
LLPS-Tag-0051	Taeniopygia guttata	48.7	6e-28	108
LLPS-Tra-1117	Triticum aestivum	48.21	2e-23	96.3
LLPS-Brd-1004	Brachypodium distachyon	48.21	1e-23	97.1
LLPS-Hov-1731	Hordeum vulgare	48.18	5e-22	92.8
LLPS-Pug-0665	Puccinia graminis	48.1	1e-16	78.2
LLPS-Scj-0312	Schizosaccharomyces japonicus	47.95	3e-12	64.3
LLPS-Asm-1087	Astyanax mexicanus	47.9	1e-25	102
LLPS-Tru-0931	Triticum urartu	47.57	5e-22	92.0
LLPS-Fus-0894	Fusarium solani	47.56	4e-16	77.4
LLPS-Cogr-0826	Colletotrichum graminicola	47.56	3e-16	77.8
LLPS-Gas-0597	Galdieria sulphuraria	47.46	1e-29	113
LLPS-Osl-0053	Ostreococcus lucimarinus	47.42	2e-24	99.0
LLPS-Nef-0665	Neosartorya fischeri	47.25	3e-22	94.7
LLPS-Asfu-1099	Aspergillus fumigatus	47.25	3e-22	94.7
LLPS-Cae-1457	Caenorhabditis elegans	46.61	3e-24	98.6
LLPS-Pes-0131	Pelodiscus sinensis	46.49	9e-23	94.7
LLPS-Orm-0978	Oryza meridionalis	46.49	4e-23	96.3
LLPS-Sei-0886	Setaria italica	46.43	2e-23	96.3
LLPS-Cog-0263	Colletotrichum gloeosporioides	46.34	6e-16	77.0
LLPS-Kop-0784	Komagataella pastoris	45.95	4e-24	99.4
LLPS-Orb-0414	Oryza barthii	45.3	5e-23	95.5
LLPS-Ori-0575	Oryza indica	45.3	5e-23	95.5
LLPS-Orp-1768	Oryza punctata	45.3	5e-23	95.5
LLPS-Ors-1697	Oryza sativa	45.3	5e-23	95.5
LLPS-Orr-0078	Oryza rufipogon	45.3	5e-23	95.5
LLPS-Ten-3174	Tetraodon nigroviridis	45.22	7e-25	100
LLPS-Usm-0789	Ustilago maydis	45.05	3e-22	93.6
LLPS-Scc-0072	Schizosaccharomyces cryophilus	44.9	8e-22	92.4
LLPS-Orl-0368	Oryzias latipes	44.83	1e-24	100
LLPS-Trr-0377	Trichoderma reesei	44.83	2e-16	78.6
LLPS-Chr-0523	Chlamydomonas reinhardtii	44.76	9e-23	94.7
LLPS-Asc-1161	Aspergillus clavatus	44.55	6e-24	99.4
LLPS-Spr-1250	Sporisorium reilianum	44.44	1e-21	92.4
LLPS-Xim-0643	Xiphophorus maculatus	44.07	1e-24	99.8
LLPS-Orn-2110	Oreochromis niloticus	44.07	4e-25	101
LLPS-Orbr-1069	Oryza brachyantha	44.07	9e-21	89.4
LLPS-Pof-2024	Poecilia formosa	44.07	1e-24	100
LLPS-Scm-1083	Scophthalmus maximus	44.07	5e-25	100
LLPS-Gaa-1715	Gasterosteus aculeatus	43.97	2e-24	99.4
LLPS-Crn-1182	Cryptococcus neoformans	43.93	1e-18	83.6
LLPS-Scs-0047	Sclerotinia sclerotiorum	43.82	7e-15	73.9
LLPS-Trv-1320	Trichoderma virens	43.68	2e-15	75.5
LLPS-Asni-0298	Aspergillus niger	43.64	2e-23	97.1
LLPS-Ast-0785	Aspergillus terreus	43.64	1e-23	98.2
LLPS-Tar-2363	Takifugu rubripes	43.59	3e-24	99.4
LLPS-Blg-0023	Blumeria graminis	43.48	2e-20	89.7
LLPS-Miv-0151	Microbotryum violaceum	42.59	4e-17	80.5
LLPS-Orni-1215	Oryza nivara	42.35	5e-11	62.0
LLPS-Orgl-1858	Oryza glumaepatula	42.35	5e-11	62.0
LLPS-Mel-0204	Melampsora laricipopulina	42.16	4e-17	79.7
LLPS-Asf-0439	Aspergillus flavus	41.82	2e-21	92.0
LLPS-Lep-0325	Leersia perrieri	40.79	6e-13	68.6
LLPS-Beb-0378	Beauveria bassiana	40.78	3e-14	72.4
LLPS-Scp-0048	Schizosaccharomyces pombe	38.98	2e-22	94.0
LLPS-Man-2442	Macaca nemestrina	38.16	1e-10	60.1
LLPS-Mea-4477	Mesocricetus auratus	35.96	7e-11	60.8

LLPS-Chc-0229LSM1

Protein Sequence

Nucleotide Sequence

LLPS-Chc-0229
LSM1