LLPS-Brn-3017
BnaC01g37220D
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | U6 snRNA-associated Sm-like protein LSm1 |
| Gene Name: | BnaC01g37220D, LSM1, GSBRNA2T00054011001 |
| Ensembl Gene: | GSBRNA2T00137644001 |
| Ensembl Protein: | CDX82501 |
| Organism: | Brassica napus |
| Taxa ID: | 3708 |
| LLPS Type: | Regulator |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| P-body, Stress granule | Predicted from orthologs | (View) |
▼ FUNCTION
| Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | CDX82501 | CDX82501 |
| UniProt | A0A078H6U8, A0A078H6U8_BRANA | |
| GeneBank | LK032309 | CDY33249.1 |
| RefSeq | XM_013815003.1 | XP_013670457.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MSWAGPEDIY LSTSLASYLD RKILVLLRDG RKLMGTLRSF DQFANAVLEG ACERVIVGEQ 60 61 YCDIPLGLYV IRGENVVLIG EMDTEREELP PHMIRVSETE IKRAQKVERE AGELRGTMRK 120 121 RMEFLDFD 128 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGTCTTGGG CTGGTCCTGA AGATATTTAT CTTTCTACTT CACTCGCTAG TTATCTCGAT 60 61 AGAAAAATAC TTGTGCTCCT TAGAGATGGT AGAAAGCTTA TGGGAACTCT CCGTTCTTTT 120 121 GATCAATTCG CCAATGCGGT TCTAGAAGGT GCGTGCGAGA GGGTCATTGT AGGTGAGCAA 180 181 TACTGCGACA TTCCTTTAGG CCTCTATGTA ATCCGTGGCG AGAATGTTGT TCTGATTGGT 240 241 GAGATGGACA CAGAGAGAGA GGAGCTTCCT CCACACATGA TTCGCGTCTC AGAGACAGAG 300 301 ATAAAAAGGG CGCAAAAAGT GGAGAGGGAA GCGGGTGAGC TGAGAGGAAC AATGAGGAAG 360 361 AGAATGGAGT TTCTTGACTT TGATTAA 387 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Lsm1-7-Pat1 complex | |
Cellular Component | MRNA cap binding complex | |
Cellular Component | P-body | |
Molecular Function | RNA cap binding | |
Biological Process | Deadenylation-dependent decapping of nuclear-transcribed mRNA | |
Biological Process | MRNA processing |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Brr-0563 | Brassica rapa | 100.0 | 1e-88 | 260 |
| LLPS-Bro-0533 | Brassica oleracea | 96.88 | 6e-86 | 253 |
| LLPS-Art-2649 | Arabidopsis thaliana | 96.09 | 9e-86 | 253 |
| LLPS-Arl-0799 | Arabidopsis lyrata | 96.09 | 2e-85 | 252 |
| LLPS-Coc-0647 | Corchorus capsularis | 90.82 | 4e-56 | 186 |
| LLPS-Phv-0537 | Phaseolus vulgaris | 89.84 | 1e-79 | 237 |
| LLPS-Glm-0137 | Glycine max | 89.06 | 4e-79 | 236 |
| LLPS-Hea-0704 | Helianthus annuus | 88.28 | 4e-78 | 233 |
| LLPS-Pot-0652 | Populus trichocarpa | 87.5 | 3e-77 | 231 |
| LLPS-Gor-0927 | Gossypium raimondii | 87.5 | 2e-77 | 231 |
| LLPS-Mae-1279 | Manihot esculenta | 87.5 | 7e-78 | 233 |
| LLPS-Prp-0821 | Prunus persica | 86.72 | 4e-78 | 233 |
| LLPS-Viv-0304 | Vitis vinifera | 85.94 | 4e-77 | 231 |
| LLPS-Met-1714 | Medicago truncatula | 85.71 | 3e-61 | 191 |
| LLPS-Sol-1874 | Solanum lycopersicum | 85.16 | 8e-77 | 230 |
| LLPS-Sot-0918 | Solanum tuberosum | 84.38 | 1e-75 | 228 |
| LLPS-Nia-1770 | Nicotiana attenuata | 83.59 | 1e-76 | 229 |
| LLPS-Amt-0547 | Amborella trichopoda | 83.59 | 9e-75 | 225 |
| LLPS-Thc-0645 | Theobroma cacao | 82.03 | 1e-73 | 222 |
| LLPS-Mua-0262 | Musa acuminata | 81.25 | 1e-71 | 217 |
| LLPS-Dac-1176 | Daucus carota | 80.0 | 2e-70 | 214 |
| LLPS-Cus-0267 | Cucumis sativus | 79.69 | 2e-71 | 217 |
| LLPS-Sei-0886 | Setaria italica | 78.12 | 3e-70 | 214 |
| LLPS-Tru-0931 | Triticum urartu | 77.45 | 2e-53 | 170 |
| LLPS-Sob-0709 | Sorghum bicolor | 77.34 | 7e-70 | 213 |
| LLPS-Brd-1004 | Brachypodium distachyon | 77.34 | 1e-69 | 212 |
| LLPS-Zem-1269 | Zea mays | 76.56 | 6e-69 | 210 |
| LLPS-Orp-1768 | Oryza punctata | 76.56 | 3e-69 | 211 |
| LLPS-Tra-1117 | Triticum aestivum | 76.56 | 3e-68 | 208 |
| LLPS-Orr-0078 | Oryza rufipogon | 76.38 | 2e-68 | 209 |
| LLPS-Ors-1697 | Oryza sativa | 76.38 | 2e-68 | 209 |
| LLPS-Ori-0575 | Oryza indica | 76.38 | 2e-68 | 209 |
| LLPS-Orb-0414 | Oryza barthii | 76.38 | 2e-68 | 209 |
| LLPS-Orm-0978 | Oryza meridionalis | 75.41 | 3e-64 | 199 |
| LLPS-Via-1044 | Vigna angularis | 72.97 | 1e-68 | 210 |
| LLPS-Php-0176 | Physcomitrella patens | 72.66 | 2e-63 | 196 |
| LLPS-Orbr-1069 | Oryza brachyantha | 72.59 | 3e-66 | 204 |
| LLPS-Hov-1731 | Hordeum vulgare | 70.83 | 7e-56 | 177 |
| LLPS-Sem-0588 | Selaginella moellendorffii | 70.31 | 4e-62 | 193 |
| LLPS-Cii-1671 | Ciona intestinalis | 62.34 | 3e-24 | 96.3 |
| LLPS-Orgl-1858 | Oryza glumaepatula | 61.07 | 3e-49 | 160 |
| LLPS-Orni-1215 | Oryza nivara | 61.07 | 3e-49 | 160 |
| LLPS-Chr-0523 | Chlamydomonas reinhardtii | 59.48 | 5e-42 | 141 |
| LLPS-Scj-0711 | Schizosaccharomyces japonicus | 59.21 | 1e-23 | 94.7 |
| LLPS-Leo-0534 | Lepisosteus oculatus | 59.21 | 8e-24 | 95.1 |
| LLPS-Scc-0072 | Schizosaccharomyces cryophilus | 59.21 | 5e-25 | 98.2 |
| LLPS-Ict-1483 | Ictidomys tridecemlineatus | 58.67 | 3e-22 | 89.7 |
| LLPS-Spr-1250 | Sporisorium reilianum | 56.63 | 6e-25 | 98.2 |
| LLPS-Fia-1356 | Ficedula albicollis | 56.52 | 2e-25 | 98.6 |
| LLPS-Ere-0055 | Erinaceus europaeus | 56.41 | 3e-22 | 90.1 |
| LLPS-Lac-2562 | Latimeria chalumnae | 55.91 | 1e-24 | 97.1 |
| LLPS-Pes-0131 | Pelodiscus sinensis | 55.79 | 3e-25 | 98.6 |
| LLPS-Drm-0601 | Drosophila melanogaster | 55.68 | 2e-24 | 96.7 |
| LLPS-Usm-0789 | Ustilago maydis | 55.42 | 8e-25 | 98.2 |
| LLPS-Pug-0665 | Puccinia graminis | 55.13 | 1e-20 | 86.7 |
| LLPS-Sus-2572 | Sus scrofa | 55.0 | 2e-27 | 104 |
| LLPS-Eqc-3245 | Equus caballus | 54.0 | 7e-27 | 102 |
| LLPS-Cap-0167 | Cavia porcellus | 54.0 | 7e-27 | 102 |
| LLPS-Caf-0769 | Canis familiaris | 54.0 | 7e-27 | 102 |
| LLPS-Poa-2737 | Pongo abelii | 54.0 | 7e-27 | 102 |
| LLPS-Nol-0100 | Nomascus leucogenys | 54.0 | 7e-27 | 102 |
| LLPS-Cas-0238 | Carlito syrichta | 54.0 | 7e-27 | 102 |
| LLPS-Loa-0012 | Loxodonta africana | 54.0 | 7e-27 | 102 |
| LLPS-Fec-1663 | Felis catus | 54.0 | 7e-27 | 102 |
| LLPS-Urm-1462 | Ursus maritimus | 54.0 | 7e-27 | 102 |
| LLPS-Pap-1406 | Pan paniscus | 54.0 | 7e-27 | 102 |
| LLPS-Pat-1612 | Pan troglodytes | 54.0 | 7e-27 | 102 |
| LLPS-Hos-0291 | Homo sapiens | 54.0 | 7e-27 | 102 |
| LLPS-Rhb-0060 | Rhinopithecus bieti | 54.0 | 7e-27 | 102 |
| LLPS-Orc-0306 | Oryctolagus cuniculus | 54.0 | 7e-27 | 102 |
| LLPS-Otg-1601 | Otolemur garnettii | 54.0 | 7e-27 | 102 |
| LLPS-Bot-1262 | Bos taurus | 54.0 | 6e-27 | 103 |
| LLPS-Dio-0030 | Dipodomys ordii | 54.0 | 7e-27 | 102 |
| LLPS-Tut-1594 | Tursiops truncatus | 54.0 | 7e-27 | 102 |
| LLPS-Myl-3288 | Myotis lucifugus | 54.0 | 7e-27 | 103 |
| LLPS-Ova-0040 | Ovis aries | 54.0 | 7e-27 | 102 |
| LLPS-Aim-0875 | Ailuropoda melanoleuca | 54.0 | 7e-27 | 102 |
| LLPS-Paa-1027 | Papio anubis | 54.0 | 7e-27 | 102 |
| LLPS-Mal-1107 | Mandrillus leucophaeus | 54.0 | 7e-27 | 102 |
| LLPS-Ran-2587 | Rattus norvegicus | 54.0 | 9e-27 | 102 |
| LLPS-Cea-0018 | Cercocebus atys | 54.0 | 7e-27 | 102 |
| LLPS-Aon-2361 | Aotus nancymaae | 54.0 | 7e-27 | 102 |
| LLPS-Chs-1943 | Chlorocebus sabaeus | 54.0 | 7e-27 | 102 |
| LLPS-Maf-1355 | Macaca fascicularis | 54.0 | 7e-27 | 102 |
| LLPS-Caj-2288 | Callithrix jacchus | 54.0 | 6e-27 | 103 |
| LLPS-Fud-0635 | Fukomys damarensis | 54.0 | 7e-27 | 102 |
| LLPS-Gog-1891 | Gorilla gorilla | 54.0 | 7e-27 | 102 |
| LLPS-Tag-0051 | Taeniopygia guttata | 53.92 | 9e-28 | 105 |
| LLPS-Mel-0204 | Melampsora laricipopulina | 53.41 | 3e-21 | 89.0 |
| LLPS-Mum-3199 | Mus musculus | 53.0 | 2e-26 | 102 |
| LLPS-Gaga-0302 | Gallus gallus | 52.94 | 6e-26 | 100 |
| LLPS-Mod-1732 | Monodelphis domestica | 52.94 | 5e-27 | 103 |
| LLPS-Meg-1340 | Meleagris gallopavo | 52.94 | 7e-26 | 100 |
| LLPS-Mup-1062 | Mustela putorius furo | 52.94 | 5e-27 | 103 |
| LLPS-Sah-1994 | Sarcophilus harrisii | 52.94 | 5e-27 | 103 |
| LLPS-Ora-1014 | Ornithorhynchus anatinus | 52.94 | 6e-27 | 103 |
| LLPS-Abg-0863 | Absidia glauca | 52.69 | 2e-23 | 93.6 |
| LLPS-Asm-1087 | Astyanax mexicanus | 51.96 | 9e-26 | 100 |
| LLPS-Xet-0133 | Xenopus tropicalis | 51.92 | 2e-25 | 99.4 |
| LLPS-Osl-0053 | Ostreococcus lucimarinus | 51.3 | 7e-34 | 120 |
| LLPS-Dar-0293 | Danio rerio | 50.98 | 4e-25 | 98.6 |
| LLPS-Icp-2370 | Ictalurus punctatus | 50.98 | 3e-25 | 99.0 |
| LLPS-Scf-2706 | Scleropages formosus | 50.0 | 8e-25 | 97.4 |
| LLPS-Chc-0229 | Chondrus crispus | 50.0 | 7e-25 | 99.8 |
| LLPS-Nec-1084 | Neurospora crassa | 49.38 | 1e-15 | 74.3 |
| LLPS-Cym-0531 | Cyanidioschyzon merolae | 49.18 | 2e-25 | 99.0 |
| LLPS-Dos-0670 | Dothistroma septosporum | 48.65 | 7e-18 | 80.1 |
| LLPS-Miv-0151 | Microbotryum violaceum | 48.1 | 4e-16 | 75.5 |
| LLPS-Pof-2024 | Poecilia formosa | 48.08 | 8e-24 | 95.1 |
| LLPS-Xim-0643 | Xiphophorus maculatus | 48.08 | 8e-24 | 95.1 |
| LLPS-Tar-2363 | Takifugu rubripes | 48.0 | 7e-23 | 92.8 |
| LLPS-Cae-1457 | Caenorhabditis elegans | 47.96 | 3e-19 | 82.8 |
| LLPS-Yal-0828 | Yarrowia lipolytica | 47.44 | 5e-14 | 68.9 |
| LLPS-Cogr-1311 | Colletotrichum graminicola | 47.3 | 3e-14 | 68.9 |
| LLPS-Ten-3174 | Tetraodon nigroviridis | 47.06 | 2e-23 | 93.6 |
| LLPS-Crn-1182 | Cryptococcus neoformans | 46.53 | 1e-20 | 87.0 |
| LLPS-Scm-1083 | Scophthalmus maximus | 46.15 | 6e-23 | 92.8 |
| LLPS-Orn-2110 | Oreochromis niloticus | 46.15 | 8e-23 | 92.4 |
| LLPS-Gaa-1715 | Gasterosteus aculeatus | 46.15 | 9e-23 | 92.4 |
| LLPS-Orl-0368 | Oryzias latipes | 46.15 | 9e-23 | 92.4 |
| LLPS-Asni-0298 | Aspergillus niger | 45.79 | 1e-26 | 102 |
| LLPS-Gas-0597 | Galdieria sulphuraria | 45.3 | 6e-27 | 103 |
| LLPS-Sac-0224 | Saccharomyces cerevisiae | 45.26 | 6e-21 | 88.2 |
| LLPS-Fus-0894 | Fusarium solani | 45.12 | 4e-15 | 72.8 |
| LLPS-Mao-0298 | Magnaporthe oryzae | 44.55 | 1e-17 | 79.3 |
| LLPS-Scp-0048 | Schizosaccharomyces pombe | 44.35 | 6e-25 | 98.2 |
| LLPS-Asfu-1099 | Aspergillus fumigatus | 44.23 | 2e-25 | 100 |
| LLPS-Nef-0665 | Neosartorya fischeri | 44.23 | 2e-25 | 100 |
| LLPS-Asg-0665 | Ashbya gossypii | 44.21 | 5e-20 | 85.5 |
| LLPS-Fuo-0031 | Fusarium oxysporum | 43.9 | 3e-15 | 72.8 |
| LLPS-Cog-0263 | Colletotrichum gloeosporioides | 43.9 | 1e-14 | 71.6 |
| LLPS-Fuv-0350 | Fusarium verticillioides | 43.9 | 3e-15 | 72.8 |
| LLPS-Gag-0579 | Gaeumannomyces graminis | 43.82 | 1e-16 | 77.0 |
| LLPS-Coo-1530 | Colletotrichum orbiculare | 43.24 | 2e-12 | 63.9 |
| LLPS-Asf-0439 | Aspergillus flavus | 42.06 | 1e-23 | 95.5 |
| LLPS-Ast-0785 | Aspergillus terreus | 41.96 | 3e-25 | 99.8 |
| LLPS-Lep-0325 | Leersia perrieri | 41.86 | 5e-12 | 63.9 |
| LLPS-Map-0895 | Magnaporthe poae | 41.6 | 2e-16 | 76.3 |
| LLPS-Asc-1161 | Aspergillus clavatus | 41.18 | 1e-23 | 95.5 |
| LLPS-Man-2442 | Macaca nemestrina | 41.03 | 4e-15 | 71.2 |
| LLPS-Mea-4477 | Mesocricetus auratus | 41.03 | 6e-15 | 70.5 |
| LLPS-Mam-0071 | Macaca mulatta | 40.7 | 6e-15 | 72.8 |
| LLPS-Zyt-1376 | Zymoseptoria tritici | 40.57 | 4e-18 | 80.1 |
| LLPS-Blg-0023 | Blumeria graminis | 40.35 | 5e-20 | 86.3 |
| LLPS-Trv-1320 | Trichoderma virens | 39.25 | 8e-19 | 82.4 |
| LLPS-Trr-0377 | Trichoderma reesei | 37.38 | 1e-19 | 84.7 |
| LLPS-Beb-0378 | Beauveria bassiana | 37.17 | 5e-18 | 81.3 |
| LLPS-Scs-0047 | Sclerotinia sclerotiorum | 36.28 | 3e-16 | 75.5 |
| LLPS-Kop-0784 | Komagataella pastoris | 35.2 | 3e-18 | 80.9 |