• Disorder
  • Domain
  • PTM
  • Variation
  • Mutation
  • Interaction
  • Disease
  • Drug
  • Physicochemical
  • Function
  • Proteomics
  • Structure
  • Localization
  • Expression
  • Element
  • Methylation

LLPS-Sob-0198
SORBI_3004G231900

Integrated Annotations

▼ OVERVIEW


Status: Unreviewed
Protein Name: DIS3-like exonuclease 2
Gene Name: SORBI_3004G231900
Ensembl Gene: SORBI_3004G231900
Ensembl Protein: OQU85395
Organism: Sorghum bicolor
Taxa ID: 4558
LLPS Type: Client


▼ PROPERTY



——— Disorder propensity (calculated by IUPred2A)

▼ Classification


Condensates:
CondensateEvidenceOrthologs
Nucleolus, Stress granulePredicted from orthologs(View)

▼ FUNCTION


3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.

▼ CROSS REFERENCE


DatabaseNucleotide IDProtein ID
EnsemblOQU85395OQU85395
UniProtA0A1Z5RPM6, A0A1Z5RPM6_SORBI
GeneBankCM000763OQU85395.1

▼ SEQUENCE


Protein Sequence (FASTA)
1     MHVGSGGAGV  DAEAEASAAG  TSQSCPLLPT  PSPTEAPASR  VDGGAPAMRY  FQPHWPQRAV  60
61    EDAIKRGYAF  VGKFRVNAHN  RNEAYCTIDG  IPVDVLITGL  AQNRAVEGDH  VAITLDPVAH  120
121   WTRMKGPNVA  CNPAIGGDSV  VREFSETNGN  HSWKKGHADV  GCRFENCSNA  VPVLDRMHPP  180
181   HKNSGFSQAV  NCGNGNATVP  ERNVKDLNDG  KSEAARALQR  ICAMICSHPS  RRPTGKVLSV  240
241   TKKSPRRDAI  VGFLASFSEF  PDGEQQKNQM  GLKRMNNVAS  SVTGLFHLLP  TDPKFPPMVV  300
301   SFSTLPDSVI  QSLRGDAAFE  KELVAARIDE  WNEENIYPYA  HVIRFLGKGG  HVKTHMDAIL  360
361   FENAISDAEF  SPESLACLPD  NCWKIPQKEL  EARKDLREVL  SFTIDPPTAS  DLDDAISIQI  420
421   LSGGTVRVGV  HIADVSYFVH  PETALDAEAQ  SRSTSVYTLK  RKISMLPSRL  SEVVSLNPGT  480
481   DRLAFSIIWD  IDPHGNIISR  WIGRSVIFSC  CKLSYELVQD  LICNEASQAR  SAISSFEVHG  540
541   KFERDDVIKS  LRGLYEVTKN  LKEVRFKGGA  LSLDTAKLMI  LFDEDGAPCD  SYRYVRNNAC  600
601   FIVEELMLLA  NMSAAEIISN  AFPDCALLRR  HPEPNLRRFR  EFEAFCAKNG  FELDASSSGQ  660
661   LHLSLSRIKE  KLQEDPVMFD  ILMFYASKQM  QSAEYFCTGD  LISKKDDWAH  YALSVPLYTH  720
721   FTSPLRRYPD  IIVHRTLNAV  IEAEQVYIKQ  KKFSTGRNGV  KASCELMDRC  FTGLQLCKDA  780
781   TESEEGKKVL  SAAAKKFKVP  YSENLGEIAE  HCNERKWAGR  RAEDAGQKLY  MWALIKNKEV  840
841   VVCNARVLGL  GPRFMSVYVP  KLAMERRIYY  DEVEGLSVEW  LEATGTLVLD  ACWNKPAQRR  900
901   GTYQMKCRPI  EEVAMVVNPS  ELSEEDEESG  AAEASGCTAK  SVLLSGDAVK  TQTAPAVLPL  960
961   VIHYLSDIPV  VLHAIGGEDC  AVDIGVRLYM  ASYFEL  996
Nucleotide CDS Sequence (FASTA)
1     ATGCACGTTG  GCAGCGGCGG  CGCCGGTGTC  GACGCCGAGG  CAGAGGCGTC  CGCGGCGGGA  60
61    ACGAGCCAGT  CCTGCCCCCT  GCTGCCCACG  CCGAGTCCTA  CGGAGGCGCC  TGCGTCGAGG  120
121   GTGGACGGGG  GAGCTCCGGC  GATGCGGTAC  TTCCAGCCTC  ACTGGCCTCA  GCGGGCCGTG  180
181   GAGGACGCCA  TCAAGAGAGG  GTATGCGTTC  GTGGGGAAGT  TCAGGGTGAA  CGCTCACAAC  240
241   CGAAATGAGG  CGTACTGCAC  GATTGATGGC  ATCCCCGTGG  ATGTTCTCAT  TACAGGATTG  300
301   GCACAAAACC  GAGCGGTTGA  AGGTGATCAT  GTTGCTATCA  CACTGGACCC  TGTTGCTCAC  360
361   TGGACCAGAA  TGAAAGGTCC  GAATGTTGCA  TGCAACCCTG  CGATAGGAGG  AGATTCTGTG  420
421   GTCCGTGAGT  TTAGTGAAAC  CAATGGGAAT  CATAGTTGGA  AGAAAGGACA  TGCAGATGTT  480
481   GGCTGCAGGT  TTGAAAATTG  CAGTAACGCT  GTACCTGTTT  TGGATAGGAT  GCATCCCCCT  540
541   CACAAGAACA  GTGGTTTTAG  TCAAGCTGTT  AATTGTGGAA  ATGGGAATGC  TACTGTCCCT  600
601   GAAAGGAATG  TGAAAGACTT  GAATGATGGA  AAGAGTGAGG  CTGCGAGAGC  ATTACAAAGG  660
661   ATCTGTGCCA  TGATATGCTC  TCATCCAAGC  AGACGTCCTA  CTGGGAAAGT  ATTATCAGTC  720
721   ACTAAGAAGT  CTCCGCGCCG  TGATGCCATT  GTAGGTTTCC  TTGCTTCTTT  CTCAGAGTTC  780
781   CCTGATGGAG  AGCAGCAGAA  AAATCAGATG  GGTCTAAAGA  GGATGAACAA  CGTAGCATCA  840
841   TCAGTTACAG  GCTTGTTTCA  TCTCTTGCCT  ACTGACCCCA  AATTCCCTCC  GATGGTTGTG  900
901   AGTTTTAGCA  CTTTGCCAGA  TAGTGTCATA  CAGAGCCTAA  GGGGTGATGC  AGCTTTTGAG  960
961   AAGGAATTGG  TTGCTGCACG  AATTGATGAA  TGGAATGAGG  AAAATATCTA  TCCCTATGCC  1020
1021  CATGTTATAC  GGTTCTTGGG  GAAGGGTGGT  CATGTTAAAA  CACACATGGA  TGCTATATTA  1080
1081  TTTGAGAATG  CGATATCTGA  TGCTGAGTTT  TCCCCTGAGT  CCTTGGCATG  TCTTCCTGAC  1140
1141  AATTGTTGGA  AGATTCCTCA  AAAAGAACTT  GAAGCAAGAA  AAGATTTGAG  GGAGGTCTTG  1200
1201  TCTTTTACAA  TAGACCCTCC  AACTGCATCG  GATCTTGATG  ATGCTATATC  AATTCAAATA  1260
1261  CTTTCAGGAG  GAACTGTCCG  TGTTGGGGTT  CACATTGCAG  ATGTTTCCTA  CTTTGTACAT  1320
1321  CCAGAGACTG  CGTTAGATGC  TGAAGCTCAA  AGCCGATCTA  CTAGTGTTTA  CACCCTGAAA  1380
1381  CGCAAAATCT  CGATGTTGCC  TTCAAGACTT  TCAGAAGTGG  TTTCGCTTAA  TCCAGGTACA  1440
1441  GACAGGCTTG  CCTTTTCAAT  TATTTGGGAT  ATTGATCCTC  ATGGTAACAT  AATTAGTCGC  1500
1501  TGGATTGGTC  GAAGCGTCAT  CTTTTCATGC  TGCAAGCTGT  CATATGAACT  TGTGCAGGAT  1560
1561  TTGATCTGTA  ATGAAGCCAG  TCAGGCTAGA  TCTGCTATTT  CTTCTTTTGA  AGTACATGGT  1620
1621  AAATTTGAGA  GAGATGATGT  TATCAAGTCA  CTTAGAGGCC  TTTATGAAGT  CACGAAAAAT  1680
1681  CTGAAGGAAG  TTAGGTTCAA  GGGTGGGGCT  CTTTCTCTTG  ACACTGCAAA  GCTTATGATC  1740
1741  TTGTTTGATG  AGGATGGGGC  TCCATGTGAT  AGCTATCGCT  ATGTGAGGAA  CAATGCATGC  1800
1801  TTCATTGTTG  AGGAGCTAAT  GTTGTTGGCA  AATATGTCAG  CTGCAGAAAT  CATATCTAAT  1860
1861  GCATTTCCTG  ATTGTGCCTT  ACTTCGTAGG  CACCCTGAAC  CTAATTTGCG  GAGGTTCAGA  1920
1921  GAGTTCGAGG  CATTTTGTGC  TAAGAATGGT  TTTGAATTGG  ATGCTTCATC  ATCTGGTCAA  1980
1981  CTACACCTTT  CACTCTCTAG  AATAAAGGAA  AAGTTGCAAG  AGGATCCTGT  TATGTTTGAT  2040
2041  ATCCTCATGT  TTTATGCTTC  AAAGCAAATG  CAGTCAGCAG  AATACTTTTG  CACAGGGGAC  2100
2101  CTGATAAGCA  AGAAAGATGA  TTGGGCACAT  TATGCGCTGT  CTGTCCCTTT  GTATACACAC  2160
2161  TTCACTTCAC  CACTTCGAAG  ATATCCTGAT  ATAATTGTTC  ACAGGACTCT  GAATGCGGTG  2220
2221  ATTGAGGCTG  AACAAGTGTA  TATAAAGCAA  AAGAAATTTT  CCACAGGCCG  GAATGGAGTC  2280
2281  AAAGCCTCTT  GTGAATTGAT  GGATAGATGT  TTTACAGGCC  TCCAGTTGTG  CAAGGATGCT  2340
2341  ACTGAATCTG  AAGAAGGAAA  AAAAGTACTT  TCTGCTGCAG  CTAAGAAATT  TAAGGTTCCT  2400
2401  TACTCTGAAA  ATCTCGGGGA  GATCGCTGAA  CACTGTAATG  AAAGAAAGTG  GGCTGGTCGC  2460
2461  CGTGCAGAAG  ATGCTGGACA  GAAGCTCTAC  ATGTGGGCTC  TGATAAAGAA  CAAAGAGGTC  2520
2521  GTGGTCTGCA  ATGCTAGAGT  TCTGGGGCTT  GGACCCAGAT  TCATGTCAGT  TTATGTGCCC  2580
2581  AAGCTTGCGA  TGGAACGAAG  GATATATTAT  GATGAAGTTG  AGGGCTTGTC  AGTTGAATGG  2640
2641  TTAGAAGCCA  CTGGAACGTT  AGTGCTTGAT  GCATGCTGGA  ACAAGCCTGC  TCAAAGGAGG  2700
2701  GGAACTTATC  AGATGAAGTG  CAGGCCAATT  GAGGAAGTTG  CGATGGTGGT  GAACCCTTCA  2760
2761  GAGTTGTCTG  AAGAAGATGA  GGAATCAGGG  GCAGCAGAAG  CTAGCGGCTG  CACTGCCAAG  2820
2821  TCTGTTTTGT  TGAGTGGCGA  TGCAGTGAAA  ACTCAGACCG  CTCCAGCTGT  TCTGCCCTTG  2880
2881  GTGATACATT  ACCTGAGTGA  CATCCCTGTG  GTTCTTCATG  CAATTGGTGG  TGAGGATTGT  2940
2941  GCGGTGGACA  TTGGAGTAAG  ACTGTACATG  GCGTCATACT  TCGAGTTATA  G  2991

▼ KEYWORD


ID
Family
Complete proteome
Cytoplasm
Exonuclease
Hydrolase
Magnesium
Manganese
Metal-binding
Nuclease
Reference proteome
RNA-binding

▼ GENE ONTOLOGY


ID
Classification
Description
Cellular Component
P-body
Molecular Function
3'-5'-exoribonuclease activity
Molecular Function
Metal ion binding
Molecular Function
RNA binding
Biological Process
Nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
Biological Process
Polyuridylation-dependent mRNA catabolic process

▼ ORTHOLOGY


DrLLPS IDOrganismIdentityE-valueScore
LLPS-Sei-1770Setaria italica89.30.0 984
LLPS-Zem-0484Zea mays88.110.01718
LLPS-Orp-0891Oryza punctata79.830.0 964
LLPS-Ors-2185Oryza sativa77.130.01531
LLPS-Brd-0329Brachypodium distachyon77.120.01555
LLPS-Org-0058Oryza glaberrima77.030.01527
LLPS-Tru-1713Triticum urartu76.460.01459
LLPS-Orni-0108Oryza nivara76.320.01504
LLPS-Tra-1034Triticum aestivum76.320.01534
LLPS-Orb-1470Oryza barthii76.220.01504
LLPS-Orr-1910Oryza rufipogon76.220.01503
LLPS-Orgl-1562Oryza glumaepatula75.910.01497
LLPS-Orm-2063Oryza meridionalis75.510.01498
LLPS-Lep-1146Leersia perrieri74.820.01501
LLPS-Ori-0385Oryza indica71.950.01392
LLPS-Mua-1382Musa acuminata57.380.0 749
LLPS-Viv-1225Vitis vinifera50.960.0 909
LLPS-Pot-0410Populus trichocarpa50.670.0 910
LLPS-Prp-2024Prunus persica50.210.0 914
LLPS-Mae-0163Manihot esculenta49.750.0 894
LLPS-Amt-1799Amborella trichopoda49.640.0 892
LLPS-Gor-1182Gossypium raimondii49.380.0 888
LLPS-Nia-0758Nicotiana attenuata49.330.0 728
LLPS-Thc-1795Theobroma cacao49.240.0 891
LLPS-Sol-0690Solanum lycopersicum49.080.0 879
LLPS-Phv-1191Phaseolus vulgaris48.830.0 901
LLPS-Glm-0896Glycine max48.790.0 885
LLPS-Via-0811Vigna angularis48.780.0 890
LLPS-Coc-1232Corchorus capsularis48.540.0 884
LLPS-Vir-2122Vigna radiata48.420.0 874
LLPS-Met-1269Medicago truncatula47.710.0 875
LLPS-Brn-1605Brassica napus47.430.0 803
LLPS-Dac-0857Daucus carota47.360.0 837
LLPS-Cus-0158Cucumis sativus47.320.0 857
LLPS-Bro-1203Brassica oleracea47.240.0 816
LLPS-Php-2293Physcomitrella patens47.177e-1997.1
LLPS-Brr-0817Brassica rapa46.70.0 810
LLPS-Hea-1109Helianthus annuus46.580.0 822
LLPS-Arl-2334Arabidopsis lyrata46.120.0 820
LLPS-Art-3016Arabidopsis thaliana46.00.0 807
LLPS-Cas-0684Carlito syrichta44.65e-79 274
LLPS-Sem-2073Selaginella moellendorffii43.170.0 726
LLPS-Cii-0167Ciona intestinalis42.25e-92 315
LLPS-Eqc-4329Equus caballus40.08e-94 324
LLPS-Orbr-0000Oryza brachyantha39.592e-80 286
LLPS-Xim-0752Xiphophorus maculatus39.152e-99 341
LLPS-Hov-0455Hordeum vulgare38.694e-78 280
LLPS-Chc-0938Chondrus crispus38.642e-81 293
LLPS-Gas-0361Galdieria sulphuraria38.329e-77 277
LLPS-Drm-0729Drosophila melanogaster37.996e-71 260
LLPS-Osl-1169Ostreococcus lucimarinus37.637e-114 368
LLPS-Icp-0192Ictalurus punctatus37.444e-71 259
LLPS-Anc-0115Anolis carolinensis37.149e-108 354
LLPS-Lac-3886Latimeria chalumnae37.012e-106 353
LLPS-Miv-0663Microbotryum violaceum36.765e-72 263
LLPS-Anp-1879Anas platyrhynchos36.353e-101 344
LLPS-Scf-1214Scleropages formosus35.735e-71 259
LLPS-Xet-2538Xenopus tropicalis35.558e-71 259
LLPS-Mel-0485Melampsora laricipopulina35.314e-99 339
LLPS-Asm-0879Astyanax mexicanus35.062e-71 260
LLPS-Asc-0144Aspergillus clavatus35.051e-72 265
LLPS-Cogr-1103Colletotrichum graminicola34.985e-73 266
LLPS-Nef-0107Neosartorya fischeri34.671e-72 265
LLPS-Asfu-0412Aspergillus fumigatus34.671e-72 265
LLPS-Ved-0570Verticillium dahliae34.568e-72 262
LLPS-Gaga-3692Gallus gallus34.443e-100 347
LLPS-Orc-1972Oryctolagus cuniculus34.322e-75 273
LLPS-Put-0086Puccinia triticina34.35e-97 340
LLPS-Asn-0513Aspergillus nidulans34.271e-71 262
LLPS-Usm-0851Ustilago maydis34.222e-74 270
LLPS-Bot-1608Bos taurus34.138e-102 346
LLPS-Mea-3464Mesocricetus auratus34.122e-102 348
LLPS-Coo-0115Colletotrichum orbiculare34.11e-70 258
LLPS-Ast-0158Aspergillus terreus34.13e-72 264
LLPS-Crn-0602Cryptococcus neoformans34.078e-91 323
LLPS-Spr-0310Sporisorium reilianum34.032e-74 270
LLPS-Ova-1200Ovis aries33.998e-102 346
LLPS-Asg-0932Ashbya gossypii33.97e-71 259
LLPS-Otg-4566Otolemur garnettii33.94e-102 347
LLPS-Ran-4561Rattus norvegicus33.881e-103 351
LLPS-Pof-2185Poecilia formosa33.861e-105 360
LLPS-Orn-1293Oreochromis niloticus33.854e-71 259
LLPS-Tar-0518Takifugu rubripes33.843e-76 275
LLPS-Scj-0973Schizosaccharomyces japonicus33.821e-97 334
LLPS-Ict-4332Ictidomys tridecemlineatus33.89e-106 356
LLPS-Mum-4428Mus musculus33.792e-102 347
LLPS-Abg-1284Absidia glauca33.737e-90 317
LLPS-Leo-0008Lepisosteus oculatus33.651e-75 273
LLPS-Pug-0682Puccinia graminis33.622e-95 336
LLPS-Ten-0123Tetraodon nigroviridis33.582e-73 266
LLPS-Sus-1529Sus scrofa33.331e-100 342
LLPS-Loa-2876Loxodonta africana33.333e-71 261
LLPS-Dar-1013Danio rerio33.144e-71 259
LLPS-Myl-2135Myotis lucifugus32.833e-94 325
LLPS-Orl-0731Oryzias latipes32.825e-71 259
LLPS-Dio-1859Dipodomys ordii32.775e-83 293
LLPS-Caf-4143Canis familiaris32.737e-99 338
LLPS-Scm-0177Scophthalmus maximus32.697e-71 259
LLPS-Gaa-3398Gasterosteus aculeatus32.677e-75 271
LLPS-Cae-1566Caenorhabditis elegans32.472e-85 300
LLPS-Fud-0309Fukomys damarensis32.194e-79 281
LLPS-Fia-3321Ficedula albicollis32.14e-110 368
LLPS-Pes-2611Pelodiscus sinensis31.94e-106 357
LLPS-Hos-1985Homo sapiens31.832e-106 358
LLPS-Pat-4801Pan troglodytes31.711e-106 359
LLPS-Pap-1418Pan paniscus31.711e-106 359
LLPS-Fec-3509Felis catus31.41e-105 357
LLPS-Caj-4631Callithrix jacchus31.294e-81 286
LLPS-Mal-4448Mandrillus leucophaeus31.262e-105 356
LLPS-Mup-2606Mustela putorius furo31.171e-103 351
LLPS-Paa-4767Papio anubis31.165e-105 355
LLPS-Gog-1060Gorilla gorilla31.131e-98 335
LLPS-Chs-0791Chlorocebus sabaeus31.122e-105 357
LLPS-Mam-2791Macaca mulatta31.19e-102 346
LLPS-Meg-0871Meleagris gallopavo31.059e-107 359
LLPS-Cap-2822Cavia porcellus30.875e-107 360
LLPS-Cea-2141Cercocebus atys30.766e-101 343
LLPS-Man-3526Macaca nemestrina30.731e-100 343
LLPS-Aim-3477Ailuropoda melanoleuca30.713e-101 344
LLPS-Tag-0667Taeniopygia guttata30.534e-72 263
LLPS-Aon-0664Aotus nancymaae30.522e-105 355
LLPS-Nol-2391Nomascus leucogenys30.252e-86 303
LLPS-Dos-0045Dothistroma septosporum30.214e-71 260
LLPS-Mod-1641Monodelphis domestica29.863e-72 264
LLPS-Trv-0077Trichoderma virens29.868e-71 259
LLPS-Sac-0085Saccharomyces cerevisiae29.835e-74 269
LLPS-Nec-0048Neurospora crassa29.633e-71 260
LLPS-Maf-1351Macaca fascicularis29.614e-71 260
LLPS-Rhb-4264Rhinopithecus bieti29.617e-71 259
LLPS-Gag-0746Gaeumannomyces graminis29.42e-72 266
LLPS-Asni-0934Aspergillus niger29.326e-71 259
LLPS-Map-0750Magnaporthe poae29.212e-72 266
LLPS-Urm-0337Ursus maritimus28.978e-71 259
LLPS-Tut-0194Tursiops truncatus28.844e-73 266
LLPS-Beb-1157Beauveria bassiana28.736e-73 268