DrLLPS - Data resource of LLPS

LLPS-Sei-0951
101757263

Integrated Annotations

▼ OVERVIEW


Status:	Unreviewed
Protein Name:	U6 snRNA-associated Sm-like protein LSm3
Gene Name:	101757263, LSM3, SETIT_3G227700v2
Ensembl Gene:	SETIT_023775mg
Ensembl Protein:	KQL15309
Organism:	Setaria italica
Taxa ID:	4555
LLPS Type:	Client

▼ PROPERTY

——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:

Condensate	Evidence	Orthologs
P-body, Stress granule	Predicted from orthologs	(View)

Organism	DrLLPS ID	UniProt ID	LLPS type	Condensate	Identity	E-value	Score
Saccharomyces cerevisiae	LLPS-Sac-0139	P57743	Client	P-body, Stress granule	45.12	4e-17	75.1

▼ FUNCTION

Binds specifically to the 3'-terminal U-tract of U6 snRNA.

▼ CROSS REFERENCE

Database	Nucleotide ID	Protein ID
Ensembl	KQL15309	KQL15309
UniProt		K3ZB54, K3ZB54_SETIT
GeneBank	AGNK02001684, CM003530	, RCV17537.1
RefSeq	XM_004961894.2	XP_004961951.1

▼ SEQUENCE

Protein Sequence (FASTA)
1 MAAEEDMAVK EPLDLIRLSL DERIYVKLRS ERELRGKLHA YDQHLNMILG DVEETVTTVE 60 61 IDDETYEEIV RTSKRTIPFL FVRGDGVILV SPPLRTV 97
Nucleotide CDS Sequence (FASTA)
1 ATGGCGGCGG AGGAGGACAT GGCGGTGAAG GAGCCGCTGG ATCTGATACG GCTCAGCCTC 60 61 GACGAGCGCA TCTACGTCAA GCTCCGCTCC GAGCGCGAGC TCCGCGGCAA GCTCCATGCA 120 121 TATGATCAGC ATCTCAATAT GATACTTGGA GATGTTGAAG AGACAGTGAC CACTGTAGAA 180 181 ATTGATGATG AAACTTATGA GGAAATCGTT CGCACGAGCA AACGCACTAT CCCCTTCCTT 240 241 TTTGTCCGAG GAGATGGTGT AATACTGGTT TCCCCACCCT TGCGGACGGT GTGA 294

▼ KEYWORD

ID	Family
KW-0181	Complete proteome
KW-0507	mRNA processing
KW-0508	mRNA splicing
KW-0539	Nucleus
KW-1185	Reference proteome
KW-0687	Ribonucleoprotein
KW-0694	RNA-binding
KW-0747	Spliceosome

▼ GENE ONTOLOGY

ID	Classification	Description
GO:0071013	Cellular Component	Catalytic step 2 spliceosome
GO:1990726	Cellular Component	Lsm1-7-Pat1 complex
GO:0000932	Cellular Component	P-body
GO:0046540	Cellular Component	U4/U6 x U5 tri-snRNP complex
GO:0005688	Cellular Component	U6 snRNP
GO:0003723	Molecular Function	RNA binding
GO:0033962	Biological Process	Cytoplasmic mRNA processing body assembly
GO:0000398	Biological Process	MRNA splicing, via spliceosome
GO:0000956	Biological Process	Nuclear-transcribed mRNA catabolic process

▼ KEGG

sita:101757263

▼ ORTHOLOGY

DrLLPS ID	Organism	Identity	E-value	Score
LLPS-Orgl-0797	Oryza glumaepatula	97.62	1e-20	87.0
LLPS-Lep-1018	Leersia perrieri	97.62	8e-21	86.7
LLPS-Orm-0017	Oryza meridionalis	97.62	4e-21	85.5
LLPS-Orni-0458	Oryza nivara	96.59	9e-38	129
LLPS-Ori-0097	Oryza indica	96.59	9e-38	129
LLPS-Org-0787	Oryza glaberrima	96.59	9e-38	129
LLPS-Ors-0447	Oryza sativa	96.59	9e-38	129
LLPS-Orp-0490	Oryza punctata	96.59	9e-38	129
LLPS-Orr-1139	Oryza rufipogon	96.0	7e-27	104
LLPS-Orb-0204	Oryza barthii	95.24	1e-34	120
LLPS-Sob-1377	Sorghum bicolor	94.74	4e-42	139
LLPS-Vir-1611	Vigna radiata	94.0	1e-09	54.7
LLPS-Tra-0954	Triticum aestivum	92.78	2e-43	143
LLPS-Via-0042	Vigna angularis	92.71	1e-41	138
LLPS-Glm-1034	Glycine max	92.71	1e-41	138
LLPS-Phv-0397	Phaseolus vulgaris	92.71	9e-42	139
LLPS-Gor-0037	Gossypium raimondii	92.71	6e-42	139
LLPS-Brd-0373	Brachypodium distachyon	92.63	4e-41	137
LLPS-Orbr-0437	Oryza brachyantha	92.55	5e-40	134
LLPS-Hov-0856	Hordeum vulgare	92.47	1e-38	132
LLPS-Cus-1413	Cucumis sativus	91.75	1e-41	138
LLPS-Mae-2013	Manihot esculenta	91.67	8e-42	139
LLPS-Met-1239	Medicago truncatula	91.58	4e-40	134
LLPS-Tru-1157	Triticum urartu	91.58	2e-40	135
LLPS-Dac-0175	Daucus carota	91.49	1e-39	133
LLPS-Hea-1146	Helianthus annuus	90.62	9e-41	136
LLPS-Thc-1641	Theobroma cacao	90.62	9e-41	136
LLPS-Pot-1472	Populus trichocarpa	90.62	1e-40	135
LLPS-Amt-0983	Amborella trichopoda	89.89	4e-36	124
LLPS-Arl-0342	Arabidopsis lyrata	89.58	2e-39	133
LLPS-Php-0016	Physcomitrella patens	89.58	6e-42	139
LLPS-Prp-0465	Prunus persica	89.58	4e-41	137
LLPS-Sot-0956	Solanum tuberosum	88.66	2e-39	133
LLPS-Sol-0155	Solanum lycopersicum	88.66	2e-39	133
LLPS-Mua-1217	Musa acuminata	88.54	1e-40	135
LLPS-Art-2395	Arabidopsis thaliana	88.54	1e-38	131
LLPS-Tar-0438	Takifugu rubripes	88.1	1e-18	80.9
LLPS-Brn-3055	Brassica napus	87.37	1e-37	128
LLPS-Brr-1887	Brassica rapa	87.37	1e-37	128
LLPS-Bro-0912	Brassica oleracea	86.6	3e-38	130
LLPS-Caj-0561	Callithrix jacchus	86.05	2e-19	82.0
LLPS-Chr-1194	Chlamydomonas reinhardtii	85.87	1e-35	123
LLPS-Sem-1061	Selaginella moellendorffii	85.57	5e-39	131
LLPS-Gaga-1754	Gallus gallus	83.87	1e-10	58.5
LLPS-Scf-1337	Scleropages formosus	82.95	1e-32	115
LLPS-Asm-0477	Astyanax mexicanus	82.95	1e-32	115
LLPS-Icp-1341	Ictalurus punctatus	82.95	2e-32	115
LLPS-Leo-1768	Lepisosteus oculatus	82.95	1e-32	115
LLPS-Dar-0151	Danio rerio	82.95	1e-32	115
LLPS-Ran-0969	Rattus norvegicus	81.82	2e-32	115
LLPS-Mal-2225	Mandrillus leucophaeus	81.82	2e-32	115
LLPS-Paa-1754	Papio anubis	81.82	2e-32	115
LLPS-Aim-2410	Ailuropoda melanoleuca	81.82	2e-32	115
LLPS-Myl-1689	Myotis lucifugus	81.82	2e-32	115
LLPS-Ova-2354	Ovis aries	81.82	1e-32	115
LLPS-Xim-2864	Xiphophorus maculatus	81.82	2e-32	115
LLPS-Tut-0901	Tursiops truncatus	81.82	2e-32	115
LLPS-Dio-1255	Dipodomys ordii	81.82	2e-32	115
LLPS-Gaa-0530	Gasterosteus aculeatus	81.82	2e-32	115
LLPS-Bot-0421	Bos taurus	81.82	2e-32	115
LLPS-Gog-1558	Gorilla gorilla	81.82	2e-32	115
LLPS-Fud-2079	Fukomys damarensis	81.82	2e-32	115
LLPS-Maf-3511	Macaca fascicularis	81.82	2e-32	115
LLPS-Mum-1136	Mus musculus	81.82	2e-32	115
LLPS-Ora-0330	Ornithorhynchus anatinus	81.82	1e-32	115
LLPS-Orl-0715	Oryzias latipes	81.82	2e-32	115
LLPS-Aon-3137	Aotus nancymaae	81.82	2e-32	115
LLPS-Cea-3244	Cercocebus atys	81.82	2e-32	115
LLPS-Sus-2187	Sus scrofa	81.82	2e-32	115
LLPS-Xet-3309	Xenopus tropicalis	81.82	1e-32	115
LLPS-Cas-1618	Carlito syrichta	81.82	1e-32	115
LLPS-Ict-3478	Ictidomys tridecemlineatus	81.82	2e-32	115
LLPS-Anc-1669	Anolis carolinensis	81.82	1e-32	115
LLPS-Nol-2637	Nomascus leucogenys	81.82	2e-32	115
LLPS-Tag-0407	Taeniopygia guttata	81.82	1e-32	115
LLPS-Poa-0737	Pongo abelii	81.82	2e-32	115
LLPS-Ten-1173	Tetraodon nigroviridis	81.82	2e-32	115
LLPS-Eqc-0410	Equus caballus	81.82	2e-32	115
LLPS-Cap-2648	Cavia porcellus	81.82	2e-32	115
LLPS-Mam-1529	Macaca mulatta	81.82	2e-32	115
LLPS-Otg-0772	Otolemur garnettii	81.82	2e-32	115
LLPS-Pes-2407	Pelodiscus sinensis	81.82	1e-32	115
LLPS-Fia-0978	Ficedula albicollis	81.82	1e-32	115
LLPS-Orc-0323	Oryctolagus cuniculus	81.82	2e-32	115
LLPS-Orn-0058	Oreochromis niloticus	81.82	2e-32	115
LLPS-Rhb-0934	Rhinopithecus bieti	81.82	2e-32	115
LLPS-Pof-1909	Poecilia formosa	81.82	2e-32	115
LLPS-Pat-1385	Pan troglodytes	81.82	2e-32	115
LLPS-Pap-0257	Pan paniscus	81.82	2e-32	115
LLPS-Urm-1494	Ursus maritimus	81.82	2e-32	115
LLPS-Meg-0694	Meleagris gallopavo	81.82	2e-32	115
LLPS-Hos-0925	Homo sapiens	81.82	2e-32	115
LLPS-Fec-0891	Felis catus	81.82	2e-32	115
LLPS-Mod-0019	Monodelphis domestica	81.82	1e-32	115
LLPS-Scm-2276	Scophthalmus maximus	81.82	2e-32	115
LLPS-Man-1373	Macaca nemestrina	81.82	2e-32	115
LLPS-Anp-0816	Anas platyrhynchos	81.82	2e-32	115
LLPS-Loa-1373	Loxodonta africana	81.82	1e-32	115
LLPS-Viv-1746	Vitis vinifera	81.4	1e-25	97.8
LLPS-Drm-0840	Drosophila melanogaster	80.9	7e-34	119
LLPS-Caf-0667	Canis familiaris	79.55	5e-31	111
LLPS-Chs-0179	Chlorocebus sabaeus	77.27	1e-28	105
LLPS-Cis-0553	Ciona savignyi	75.73	7e-35	121
LLPS-Abg-0103	Absidia glauca	74.16	1e-30	110
LLPS-Osl-0529	Ostreococcus lucimarinus	72.63	5e-35	121
LLPS-Chc-0807	Chondrus crispus	71.88	6e-08	50.4
LLPS-Mup-2137	Mustela putorius furo	71.26	5e-25	95.9
LLPS-Cae-1508	Caenorhabditis elegans	68.18	8e-28	103
LLPS-Gas-0427	Galdieria sulphuraria	67.05	8e-25	95.1
LLPS-Spr-1174	Sporisorium reilianum	66.29	5e-24	94.0
LLPS-Usm-0166	Ustilago maydis	65.17	4e-24	94.0
LLPS-Coc-0717	Corchorus capsularis	63.01	8e-20	83.2
LLPS-Asc-0713	Aspergillus clavatus	62.26	2e-15	70.9
LLPS-Asfu-0397	Aspergillus fumigatus	62.26	1e-15	70.9
LLPS-Nef-0774	Neosartorya fischeri	62.26	3e-15	70.5
LLPS-Miv-0174	Microbotryum violaceum	60.23	7e-24	92.8
LLPS-Pug-0460	Puccinia graminis	60.0	5e-21	85.5
LLPS-Zem-0514	Zea mays	59.74	7e-19	80.9
LLPS-Put-1113	Puccinia triticina	58.06	3e-19	81.6
LLPS-Cym-0814	Cyanidioschyzon merolae	57.47	5e-19	80.5
LLPS-Scp-0434	Schizosaccharomyces pombe	56.67	4e-24	93.6
LLPS-Asf-0142	Aspergillus flavus	55.79	1e-20	84.7
LLPS-Mel-0358	Melampsora laricipopulina	55.7	2e-14	68.6
LLPS-Trv-0424	Trichoderma virens	55.56	4e-19	80.5
LLPS-Asn-0926	Aspergillus nidulans	55.29	2e-20	84.0
LLPS-Trr-0843	Trichoderma reesei	55.26	9e-14	65.9
LLPS-Ast-0481	Aspergillus terreus	55.21	3e-20	83.6
LLPS-Pyt-1188	Pyrenophora teres	55.06	5e-20	83.2
LLPS-Phn-0694	Phaeosphaeria nodorum	55.06	6e-20	82.8
LLPS-Zyt-0727	Zymoseptoria tritici	53.68	3e-20	83.6
LLPS-Asni-0955	Aspergillus niger	53.68	5e-21	85.5
LLPS-Yal-0584	Yarrowia lipolytica	53.41	3e-14	67.8
LLPS-Scc-0801	Schizosaccharomyces cryophilus	53.33	2e-23	91.7
LLPS-Lem-0783	Leptosphaeria maculans	52.81	3e-19	80.9
LLPS-Dos-0282	Dothistroma septosporum	52.63	1e-20	84.7
LLPS-Scj-0925	Schizosaccharomyces japonicus	51.65	6e-15	69.7
LLPS-Ved-0616	Verticillium dahliae	51.65	2e-20	84.3
LLPS-Fuo-1201	Fusarium oxysporum	51.65	2e-19	81.3
LLPS-Coo-0318	Colletotrichum orbiculare	50.55	4e-19	80.5
LLPS-Fuv-0972	Fusarium verticillioides	50.55	1e-18	79.7
LLPS-Fus-0200	Fusarium solani	50.55	4e-19	80.5
LLPS-Cog-0812	Colletotrichum gloeosporioides	50.0	3e-18	78.6
LLPS-Beb-0550	Beauveria bassiana	50.0	2e-18	78.6
LLPS-Nec-0552	Neurospora crassa	49.47	6e-19	80.1
LLPS-Cogr-0037	Colletotrichum graminicola	49.45	2e-18	79.0
LLPS-Tum-0405	Tuber melanosporum	47.87	1e-21	87.0
LLPS-Blg-0127	Blumeria graminis	47.56	6e-17	75.1
LLPS-Map-0210	Magnaporthe poae	47.31	3e-17	75.9
LLPS-Mao-0302	Magnaporthe oryzae	46.24	2e-17	75.9
LLPS-Gag-0907	Gaeumannomyces graminis	46.24	5e-17	75.1
LLPS-Crn-0269	Cryptococcus neoformans	45.65	3e-17	75.9
LLPS-Kop-0632	Komagataella pastoris	44.71	2e-18	78.2
LLPS-Sac-0139	Saccharomyces cerevisiae	41.18	8e-13	63.9
LLPS-Asg-0739	Ashbya gossypii	40.24	1e-12	63.5

LLPS-Sei-0951101757263

Protein Sequence

Nucleotide Sequence

LLPS-Sei-0951
101757263