• Disorder▼
  • Domain▼
  • PTM▼
  • Variation▼
  • Mutation▼
  • Interaction▼
  • Disease▼
  • Drug▼
  • Physicochemical▼
  • Function▼
  • Proteomics▼
  • Structure▼
  • Localization▼
  • Expression▼
  • Element▼
  • Methylation▼

LLPS-Phv-0397
LSM3

Integrated Annotations

▼ OVERVIEW

Status: Unreviewed
Protein Name: U6 snRNA-associated Sm-like protein LSm3
Gene Name: LSM3, PHAVU_004G095700g
Ensembl Gene: PHAVU_004G095700g
Ensembl Protein: ESW24024
Organism: Phaseolus vulgaris
Taxa ID: 3885
LLPS Type: Others


▼ PROPERTY


——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:
CondensateEvidenceOrthologs
Nuclear speckle, Stress granulePredicted from orthologs(View)

▼ FUNCTION

Binds specifically to the 3'-terminal U-tract of U6 snRNA.

▼ CROSS REFERENCE

DatabaseNucleotide IDProtein ID
EnsemblESW24024ESW24024
UniProtV7C1J6, V7C1J6_PHAVU
GeneBankCM002291ESW24024.1
RefSeqXM_007151968.1XP_007152030.1

▼ SEQUENCE

Protein Sequence (FASTA)
1     MATEEESAVK  EPLDLIRLSL  DERIYVKLRS  DRELRGKLHA  YDQHLNMILG  DVEEVVTTVE  60
61    IDDETYEEIV  RTTKRTVPFL  FVRGDGVILV  SPPLRTA  97
Nucleotide CDS Sequence (FASTA)
1     ATGGCTACAG  AGGAAGAGAG  TGCGGTGAAG  GAGCCTTTGG  ATCTCATTAG  GCTCAGCCTT  60
61    GATGAACGTA  TCTACGTCAA  GCTCCGTTCT  GACAGAGAGC  TTCGTGGCAA  ACTTCACGCT  120
121   TATGATCAGC  ATCTTAATAT  GATTCTTGGT  GATGTTGAAG  AGGTTGTTAC  TACTGTGGAA  180
181   ATTGATGATG  AGACATATGA  AGAAATTGTG  AGGACTACTA  AGCGGACGGT  TCCTTTCTTG  240
241   TTTGTTAGGG  GAGATGGGGT  GATATTGGTT  TCCCCGCCCT  TGAGGACCGC  ATAA  294

▼ KEYWORD

ID
Family
Complete proteome
mRNA processing
mRNA splicing
Nucleus
Reference proteome
Ribonucleoprotein
RNA-binding
Spliceosome

▼ GENE ONTOLOGY

ID
Classification
Description
Cellular Component
Catalytic step 2 spliceosome
Cellular Component
Lsm1-7-Pat1 complex
Cellular Component
P-body
Cellular Component
U4/U6 x U5 tri-snRNP complex
Cellular Component
U6 snRNP
Molecular Function
RNA binding
Biological Process
Cytoplasmic mRNA processing body assembly
Biological Process
MRNA splicing, via spliceosome
Biological Process
Nuclear-transcribed mRNA catabolic process

▼ ORTHOLOGY

DrLLPS IDOrganismIdentityE-valueScore
LLPS-Lep-1018Leersia perrieri100.01e-2188.6
LLPS-Orgl-0797Oryza glumaepatula100.02e-2189.4
LLPS-Orm-0017Oryza meridionalis100.07e-2287.4
LLPS-Glm-1034Glycine max98.978e-46 149
LLPS-Via-0042Vigna angularis98.978e-46 149
LLPS-Gor-0037Gossypium raimondii98.972e-45 148
LLPS-Vir-1611Vigna radiata98.046e-1157.8
LLPS-Met-1239Medicago truncatula97.923e-44 145
LLPS-Ori-0097Oryza indica97.752e-39 132
LLPS-Orni-0458Oryza nivara97.752e-39 132
LLPS-Orp-0490Oryza punctata97.752e-39 132
LLPS-Ors-0447Oryza sativa97.752e-39 132
LLPS-Org-0787Oryza glaberrima97.752e-39 132
LLPS-Orr-1139Oryza rufipogon97.337e-28 107
LLPS-Mae-0346Manihot esculenta96.919e-45 146
LLPS-Sob-1377Sorghum bicolor96.884e-43 142
LLPS-Orb-0204Oryza barthii96.473e-36 124
LLPS-Thc-1641Theobroma cacao95.883e-44 145
LLPS-Hea-1146Helianthus annuus95.883e-44 145
LLPS-Pot-1472Populus trichocarpa95.885e-44 144
LLPS-Prp-0465Prunus persica95.889e-45 146
LLPS-Sei-1237Setaria italica95.831e-42 141
LLPS-Orbr-0437Oryza brachyantha95.793e-42 140
LLPS-Cus-1413Cucumis sativus94.852e-43 143
LLPS-Dac-0175Daucus carota94.744e-41 137
LLPS-Hov-0856Hordeum vulgare94.684e-40 135
LLPS-Mua-1217Musa acuminata93.814e-44 144
LLPS-Brd-0373Brachypodium distachyon93.755e-42 139
LLPS-Amt-0983Amborella trichopoda93.187e-36 124
LLPS-Tra-0837Triticum aestivum92.712e-41 138
LLPS-Tru-1157Triticum urartu92.712e-41 138
LLPS-Sol-0155Solanum lycopersicum91.758e-42 139
LLPS-Php-0016Physcomitrella patens91.752e-43 143
LLPS-Sot-0956Solanum tuberosum91.758e-42 139
LLPS-Sem-1061Selaginella moellendorffii89.696e-41 136
LLPS-Art-2395Arabidopsis thaliana89.697e-41 136
LLPS-Arl-0342Arabidopsis lyrata88.662e-40 135
LLPS-Brn-2118Brassica napus87.636e-39 131
LLPS-Brr-2541Brassica rapa87.636e-39 131
LLPS-Bro-0912Brassica oleracea87.632e-38 131
LLPS-Caj-0561Callithrix jacchus86.362e-2084.7
LLPS-Tar-0438Takifugu rubripes86.361e-1983.6
LLPS-Viv-1746Vitis vinifera83.722e-27 102
LLPS-Chr-1194Chlamydomonas reinhardtii81.442e-35 122
LLPS-Leo-1768Lepisosteus oculatus80.225e-34 119
LLPS-Asm-0477Astyanax mexicanus80.225e-34 119
LLPS-Icp-1341Ictalurus punctatus80.229e-34 118
LLPS-Scf-1337Scleropages formosus80.225e-34 119
LLPS-Dar-0151Danio rerio80.225e-34 119
LLPS-Sus-2187Sus scrofa79.126e-34 119
LLPS-Aon-3137Aotus nancymaae79.126e-34 119
LLPS-Cea-3244Cercocebus atys79.126e-34 119
LLPS-Cis-0553Ciona savignyi79.121e-34 121
LLPS-Maf-3511Macaca fascicularis79.126e-34 119
LLPS-Mum-1136Mus musculus79.126e-34 119
LLPS-Ora-0330Ornithorhynchus anatinus79.126e-34 119
LLPS-Fud-2079Fukomys damarensis79.126e-34 119
LLPS-Gog-1558Gorilla gorilla79.126e-34 119
LLPS-Dio-1255Dipodomys ordii79.127e-34 119
LLPS-Gaa-0530Gasterosteus aculeatus79.128e-34 118
LLPS-Bot-0421Bos taurus79.127e-34 118
LLPS-Xim-2864Xiphophorus maculatus79.128e-34 118
LLPS-Tut-0901Tursiops truncatus79.126e-34 119
LLPS-Mal-2225Mandrillus leucophaeus79.126e-34 119
LLPS-Paa-1754Papio anubis79.126e-34 119
LLPS-Aim-2410Ailuropoda melanoleuca79.126e-34 119
LLPS-Myl-1689Myotis lucifugus79.126e-34 119
LLPS-Ova-2354Ovis aries79.127e-34 119
LLPS-Ran-0969Rattus norvegicus79.126e-34 119
LLPS-Man-1373Macaca nemestrina79.126e-34 119
LLPS-Anp-0816Anas platyrhynchos79.129e-34 118
LLPS-Loa-1373Loxodonta africana79.127e-34 119
LLPS-Hos-0925Homo sapiens79.126e-34 119
LLPS-Meg-0694Meleagris gallopavo79.127e-34 118
LLPS-Pof-1909Poecilia formosa79.128e-34 118
LLPS-Pat-1385Pan troglodytes79.126e-34 119
LLPS-Pap-0257Pan paniscus79.126e-34 119
LLPS-Urm-1494Ursus maritimus79.126e-34 119
LLPS-Mod-0019Monodelphis domestica79.126e-34 119
LLPS-Fec-0891Felis catus79.126e-34 119
LLPS-Scm-2276Scophthalmus maximus79.128e-34 118
LLPS-Orc-0323Oryctolagus cuniculus79.126e-34 119
LLPS-Fia-0978Ficedula albicollis79.126e-34 119
LLPS-Orn-0058Oreochromis niloticus79.128e-34 118
LLPS-Rhb-0934Rhinopithecus bieti79.126e-34 119
LLPS-Otg-0772Otolemur garnettii79.126e-34 119
LLPS-Pes-2407Pelodiscus sinensis79.126e-34 119
LLPS-Mam-1529Macaca mulatta79.126e-34 119
LLPS-Poa-0737Pongo abelii79.126e-34 119
LLPS-Ten-1173Tetraodon nigroviridis79.128e-34 118
LLPS-Cap-2648Cavia porcellus79.126e-34 119
LLPS-Eqc-0410Equus caballus79.126e-34 119
LLPS-Anc-1669Anolis carolinensis79.126e-34 119
LLPS-Nol-2637Nomascus leucogenys79.126e-34 119
LLPS-Ict-3478Ictidomys tridecemlineatus79.129e-34 118
LLPS-Tag-0407Taeniopygia guttata79.126e-34 119
LLPS-Xet-3309Xenopus tropicalis79.127e-34 118
LLPS-Cas-1618Carlito syrichta79.126e-34 119
LLPS-Drm-0840Drosophila melanogaster77.536e-33 116
LLPS-Caf-0667Canis familiaris76.923e-32 114
LLPS-Gaga-1754Gallus gallus75.02e-1160.5
LLPS-Osl-0529Ostreococcus lucimarinus74.742e-35 122
LLPS-Chs-0179Chlorocebus sabaeus74.735e-30 108
LLPS-Orl-0715Oryzias latipes74.517e-34 119
LLPS-Abg-0103Absidia glauca71.281e-31 113
LLPS-Mup-2137Mustela putorius furo69.322e-2597.4
LLPS-Gas-0427Galdieria sulphuraria67.422e-2699.8
LLPS-Coc-0717Corchorus capsularis67.125e-2289.4
LLPS-Spr-1174Sporisorium reilianum65.564e-2596.7
LLPS-Usm-0166Ustilago maydis65.173e-2597.1
LLPS-Chc-0807Chondrus crispus64.861e-0852.8
LLPS-Cae-1508Caenorhabditis elegans64.712e-30 109
LLPS-Asc-0713Aspergillus clavatus64.152e-1672.8
LLPS-Nef-0774Neosartorya fischeri62.261e-1571.2
LLPS-Asfu-0397Aspergillus fumigatus62.266e-1672.0
LLPS-Zem-0514Zea mays61.044e-1981.6
LLPS-Miv-0174Microbotryum violaceum60.928e-2595.1
LLPS-Asf-0142Aspergillus flavus58.141e-2187.0
LLPS-Put-1113Puccinia triticina58.066e-2186.3
LLPS-Scp-0434Schizosaccharomyces pombe57.782e-2596.7
LLPS-Pug-0460Puccinia graminis57.732e-2289.4
LLPS-Zyt-0727Zymoseptoria tritici57.145e-2185.5
LLPS-Asni-0955Aspergillus niger56.982e-2289.4
LLPS-Asn-0926Aspergillus nidulans56.983e-2289.0
LLPS-Mel-0358Melampsora laricipopulina56.962e-1571.2
LLPS-Cym-0814Cyanidioschyzon merolae56.181e-1982.0
LLPS-Scc-0801Schizosaccharomyces cryophilus55.561e-2494.7
LLPS-Ast-0481Aspergillus terreus55.214e-2185.9
LLPS-Trv-0424Trichoderma virens55.067e-2185.1
LLPS-Phn-0694Phaeosphaeria nodorum55.061e-2187.0
LLPS-Beb-0550Beauveria bassiana54.558e-2082.4
LLPS-Trr-0843Trichoderma reesei53.957e-1568.9
LLPS-Scj-0925Schizosaccharomyces japonicus53.854e-1672.4
LLPS-Pyt-1188Pyrenophora teres53.197e-2287.8
LLPS-Fuv-0972Fusarium verticillioides52.819e-2082.4
LLPS-Lem-0783Leptosphaeria maculans52.816e-2185.5
LLPS-Fus-0200Fusarium solani52.813e-2083.6
LLPS-Cog-0812Colletotrichum gloeosporioides52.814e-2083.2
LLPS-Coo-0318Colletotrichum orbiculare52.755e-2185.5
LLPS-Fuo-1201Fusarium oxysporum52.753e-2083.6
LLPS-Dos-0282Dothistroma septosporum52.632e-2186.7
LLPS-Cogr-0037Colletotrichum graminicola51.691e-1982.0
LLPS-Ved-0616Verticillium dahliae51.654e-2185.9
LLPS-Map-0210Magnaporthe poae50.543e-1980.9
LLPS-Nec-0552Neurospora crassa50.531e-2084.3
LLPS-Gag-0907Gaeumannomyces graminis49.465e-1980.5
LLPS-Tum-0405Tuber melanosporum48.948e-2390.1
LLPS-Crn-0269Cryptococcus neoformans48.842e-1879.0
LLPS-Mao-0302Magnaporthe oryzae48.451e-1982.0
LLPS-Blg-0127Blumeria graminis46.324e-1877.8
LLPS-Yal-0584Yarrowia lipolytica45.367e-1569.3
LLPS-Kop-0632Komagataella pastoris44.053e-1775.5
LLPS-Asg-0739Ashbya gossypii40.242e-1262.8
LLPS-Sac-0139Saccharomyces cerevisiae40.243e-1262.4