DrLLPS - Data resource of LLPS

LLPS-Coc-0717
LSM3

Integrated Annotations

▼ OVERVIEW


Status:	Unreviewed
Protein Name:	U6 snRNA-associated Sm-like protein LSm3
Gene Name:	LSM3, CCACVL1_27331
Ensembl Gene:	CCACVL1_27331
Ensembl Protein:	OMO55258
Organism:	Corchorus capsularis
Taxa ID:	210143
LLPS Type:	Others

▼ PROPERTY

——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:

Condensate	Evidence	Orthologs
Nuclear speckle, Stress granule	Predicted from orthologs	(View)

Organism	DrLLPS ID	UniProt ID	LLPS type	Condensate	Identity	E-value	Score
Mus musculus	LLPS-Mum-1136	P62311	Client	Nuclear speckle	53.52	3e-15	71.6
Homo sapiens	LLPS-Hos-0925	P62310	Client	Stress granule	53.52	3e-15	71.6

▼ FUNCTION

Binds specifically to the 3'-terminal U-tract of U6 snRNA.

▼ CROSS REFERENCE

Database	Nucleotide ID	Protein ID
Ensembl	OMO55258	OMO55258
UniProt		A0A1R3GAY8, A0A1R3GAY8_COCAP
GeneBank	AWWV01014731	OMO55258.1

▼ SEQUENCE

Protein Sequence (FASTA)
1 MASEEESAVK EPLDLIRLSL DERIYVKLRS DRELRGKLHH EMRWNSQFSG WLLSVKVLCR 60 61 ILAYDQHLNM ILGDVEEIVT TVEIDDETYE EIVRECVKRI SGDETGTKHC TGQYFDYLSC 120 121 IDKCVAPELF AKLK 134
Nucleotide CDS Sequence (FASTA)
1 ATGGCAAGCG AGGAAGAGAG CGCGGTGAAG GAGCCCTTGG ATCTGATAAG GCTCAGCCTC 60 61 GACGAGCGTA TTTACGTCAA GCTCCGTTCC GACCGTGAGC TCCGTGGCAA GCTTCATCAT 120 121 GAGATGAGAT GGAATAGTCA GTTTAGTGGA TGGTTATTAA GTGTAAAAGT GCTATGTAGG 180 181 ATACTGGCTT ATGATCAGCA CTTGAATATG ATTCTAGGAG ATGTTGAAGA GATTGTTACT 240 241 ACAGTTGAAA TAGATGATGA AACCTATGAA GAGATTGTTC GGGAATGTGT TAAGAGGATT 300 301 TCAGGTGATG AGACTGGAAC CAAGCATTGC ACTGGACAAT ACTTTGACTA CTTGAGTTGT 360 361 ATTGACAAAT GTGTTGCCCC AGAGCTATTT GCAAAGCTGA AGTAA 405

▼ KEYWORD

ID	Family
KW-0181	Complete proteome
KW-0507	mRNA processing
KW-0508	mRNA splicing
KW-0539	Nucleus
KW-1185	Reference proteome
KW-0687	Ribonucleoprotein
KW-0694	RNA-binding
KW-0747	Spliceosome

▼ GENE ONTOLOGY

ID	Classification	Description
GO:0071013	Cellular Component	Catalytic step 2 spliceosome
GO:1990726	Cellular Component	Lsm1-7-Pat1 complex
GO:0000932	Cellular Component	P-body
GO:0046540	Cellular Component	U4/U6 x U5 tri-snRNP complex
GO:0005688	Cellular Component	U6 snRNP
GO:0003723	Molecular Function	RNA binding
GO:0033962	Biological Process	Cytoplasmic mRNA processing body assembly
GO:0000398	Biological Process	MRNA splicing, via spliceosome
GO:0000956	Biological Process	Nuclear-transcribed mRNA catabolic process

▼ ORTHOLOGY

DrLLPS ID	Organism	Identity	E-value	Score
LLPS-Vir-1611	Vigna radiata	78.12	9e-08	50.1
LLPS-Viv-1746	Vitis vinifera	75.53	5e-37	128
LLPS-Pot-1472	Populus trichocarpa	75.53	4e-37	128
LLPS-Mae-0346	Manihot esculenta	75.53	4e-37	128
LLPS-Thc-1641	Theobroma cacao	74.47	1e-36	127
LLPS-Orm-0017	Oryza meridionalis	73.26	1e-30	111
LLPS-Lep-1018	Leersia perrieri	73.26	2e-31	115
LLPS-Dac-0175	Daucus carota	72.83	7e-34	120
LLPS-Phv-0450	Phaseolus vulgaris	72.34	9e-36	125
LLPS-Mua-1217	Musa acuminata	72.34	1e-35	124
LLPS-Cus-1413	Cucumis sativus	72.34	6e-35	122
LLPS-Orgl-0797	Oryza glumaepatula	71.11	7e-32	118
LLPS-Hea-1146	Helianthus annuus	70.3	4e-37	128
LLPS-Brd-0373	Brachypodium distachyon	69.61	2e-34	121
LLPS-Gor-0037	Gossypium raimondii	69.31	6e-37	128
LLPS-Glm-1034	Glycine max	69.31	9e-37	127
LLPS-Sol-0155	Solanum lycopersicum	69.31	6e-36	125
LLPS-Via-0042	Vigna angularis	69.31	9e-37	127
LLPS-Sot-0956	Solanum tuberosum	69.31	6e-36	125
LLPS-Php-0016	Physcomitrella patens	69.15	5e-34	120
LLPS-Ors-0447	Oryza sativa	68.82	2e-31	114
LLPS-Orp-0490	Oryza punctata	68.82	2e-31	114
LLPS-Orr-1139	Oryza rufipogon	68.82	9e-32	119
LLPS-Org-0787	Oryza glaberrima	68.82	2e-31	114
LLPS-Ori-0097	Oryza indica	68.82	2e-31	114
LLPS-Orni-0458	Oryza nivara	68.82	2e-31	114
LLPS-Tru-1157	Triticum urartu	68.63	6e-34	120
LLPS-Tra-0837	Triticum aestivum	68.63	6e-34	120
LLPS-Sei-1237	Setaria italica	68.63	3e-34	121
LLPS-Hov-0856	Hordeum vulgare	68.37	4e-33	119
LLPS-Sob-1377	Sorghum bicolor	68.0	8e-35	122
LLPS-Met-1239	Medicago truncatula	68.0	3e-35	123
LLPS-Orbr-0437	Oryza brachyantha	67.68	1e-33	119
LLPS-Amt-0983	Amborella trichopoda	67.44	7e-29	107
LLPS-Prp-0465	Prunus persica	67.33	2e-36	126
LLPS-Orb-0204	Oryza barthii	66.29	5e-28	104
LLPS-Zem-0514	Zea mays	64.22	3e-34	122
LLPS-Art-2395	Arabidopsis thaliana	64.0	3e-33	118
LLPS-Sem-1061	Selaginella moellendorffii	63.37	5e-27	102
LLPS-Bro-0912	Brassica oleracea	63.0	6e-33	118
LLPS-Arl-0342	Arabidopsis lyrata	63.0	9e-33	117
LLPS-Brr-2541	Brassica rapa	62.38	2e-33	119
LLPS-Brn-3055	Brassica napus	62.38	2e-33	119
LLPS-Chr-1194	Chlamydomonas reinhardtii	62.11	5e-28	105
LLPS-Tar-0438	Takifugu rubripes	60.2	2e-26	102
LLPS-Dar-0151	Danio rerio	58.95	1e-27	104
LLPS-Leo-1768	Lepisosteus oculatus	58.95	1e-27	103
LLPS-Icp-1341	Ictalurus punctatus	58.95	1e-27	103
LLPS-Asm-0477	Astyanax mexicanus	58.95	1e-27	104
LLPS-Scf-1337	Scleropages formosus	58.95	1e-27	104
LLPS-Fec-0891	Felis catus	57.89	2e-27	103
LLPS-Mod-0019	Monodelphis domestica	57.89	2e-27	103
LLPS-Scm-2276	Scophthalmus maximus	57.89	3e-27	103
LLPS-Meg-0694	Meleagris gallopavo	57.89	2e-27	103
LLPS-Hos-0925	Homo sapiens	57.89	2e-27	103
LLPS-Pof-1909	Poecilia formosa	57.89	3e-27	103
LLPS-Pat-1385	Pan troglodytes	57.89	2e-27	103
LLPS-Pap-0257	Pan paniscus	57.89	2e-27	103
LLPS-Urm-1494	Ursus maritimus	57.89	2e-27	103
LLPS-Anp-0816	Anas platyrhynchos	57.89	2e-27	103
LLPS-Loa-1373	Loxodonta africana	57.89	2e-27	103
LLPS-Man-1373	Macaca nemestrina	57.89	2e-27	103
LLPS-Pes-2407	Pelodiscus sinensis	57.89	2e-27	103
LLPS-Otg-0772	Otolemur garnettii	57.89	2e-27	103
LLPS-Orn-0058	Oreochromis niloticus	57.89	3e-27	103
LLPS-Rhb-0934	Rhinopithecus bieti	57.89	2e-27	103
LLPS-Orc-0323	Oryctolagus cuniculus	57.89	2e-27	103
LLPS-Fia-0978	Ficedula albicollis	57.89	2e-27	103
LLPS-Cap-2648	Cavia porcellus	57.89	2e-27	103
LLPS-Eqc-0410	Equus caballus	57.89	2e-27	103
LLPS-Poa-0737	Pongo abelii	57.89	2e-27	103
LLPS-Ten-1173	Tetraodon nigroviridis	57.89	3e-27	103
LLPS-Mam-1529	Macaca mulatta	57.89	2e-27	103
LLPS-Xet-3309	Xenopus tropicalis	57.89	2e-27	103
LLPS-Cas-1618	Carlito syrichta	57.89	2e-27	103
LLPS-Tag-0407	Taeniopygia guttata	57.89	2e-27	103
LLPS-Anc-1669	Anolis carolinensis	57.89	2e-27	103
LLPS-Nol-2637	Nomascus leucogenys	57.89	2e-27	103
LLPS-Ora-0330	Ornithorhynchus anatinus	57.89	2e-27	103
LLPS-Maf-3511	Macaca fascicularis	57.89	2e-27	103
LLPS-Mum-1136	Mus musculus	57.89	2e-27	103
LLPS-Sus-2187	Sus scrofa	57.89	2e-27	103
LLPS-Aon-3137	Aotus nancymaae	57.89	2e-27	103
LLPS-Cea-3244	Cercocebus atys	57.89	2e-27	103
LLPS-Gog-1558	Gorilla gorilla	57.89	2e-27	103
LLPS-Fud-2079	Fukomys damarensis	57.89	2e-27	103
LLPS-Tut-0901	Tursiops truncatus	57.89	2e-27	103
LLPS-Xim-2864	Xiphophorus maculatus	57.89	3e-27	103
LLPS-Bot-0421	Bos taurus	57.89	2e-27	103
LLPS-Dio-1255	Dipodomys ordii	57.89	2e-27	103
LLPS-Gaa-0530	Gasterosteus aculeatus	57.89	3e-27	103
LLPS-Ran-0969	Rattus norvegicus	57.89	2e-27	103
LLPS-Aim-2410	Ailuropoda melanoleuca	57.89	2e-27	103
LLPS-Ova-2354	Ovis aries	57.89	2e-27	103
LLPS-Myl-1689	Myotis lucifugus	57.89	2e-27	103
LLPS-Paa-1754	Papio anubis	57.89	2e-27	103
LLPS-Mal-2225	Mandrillus leucophaeus	57.89	2e-27	103
LLPS-Chc-0807	Chondrus crispus	57.78	2e-08	52.8
LLPS-Caf-0667	Canis familiaris	55.79	6e-26	99.8
LLPS-Orl-0715	Oryzias latipes	55.66	1e-27	103
LLPS-Osl-0529	Ostreococcus lucimarinus	55.13	2e-20	85.1
LLPS-Ict-3478	Ictidomys tridecemlineatus	55.0	2e-27	103
LLPS-Chs-0179	Chlorocebus sabaeus	54.74	4e-24	95.1
LLPS-Mup-2137	Mustela putorius furo	54.44	4e-22	89.7
LLPS-Cis-0553	Ciona savignyi	53.54	5e-26	100
LLPS-Scp-0434	Schizosaccharomyces pombe	51.76	5e-17	76.3
LLPS-Caj-0561	Callithrix jacchus	51.3	3e-27	103
LLPS-Drm-0840	Drosophila melanogaster	50.47	5e-25	97.4
LLPS-Abg-0103	Absidia glauca	50.0	8e-23	91.7
LLPS-Spr-1174	Sporisorium reilianum	49.47	7e-19	81.6
LLPS-Gaga-1754	Gallus gallus	49.18	3e-11	60.8
LLPS-Usm-0166	Ustilago maydis	48.94	2e-19	83.2
LLPS-Scc-0801	Schizosaccharomyces cryophilus	47.5	1e-16	75.5
LLPS-Gas-0427	Galdieria sulphuraria	47.25	1e-17	77.8
LLPS-Beb-0550	Beauveria bassiana	46.91	1e-13	67.0
LLPS-Asc-0713	Aspergillus clavatus	45.88	5e-14	67.8
LLPS-Tum-0405	Tuber melanosporum	45.88	2e-16	75.1
LLPS-Cae-1508	Caenorhabditis elegans	45.71	2e-21	87.8
LLPS-Fuo-1201	Fusarium oxysporum	45.68	2e-13	67.0
LLPS-Trv-0424	Trichoderma virens	45.68	1e-13	67.4
LLPS-Asni-0955	Aspergillus niger	45.16	9e-16	72.8
LLPS-Asn-0926	Aspergillus nidulans	45.16	1e-15	72.4
LLPS-Nef-0774	Neosartorya fischeri	44.71	3e-13	66.2
LLPS-Asfu-0397	Aspergillus fumigatus	44.71	1e-13	67.0
LLPS-Trr-0843	Trichoderma reesei	44.59	2e-11	60.8
LLPS-Ast-0481	Aspergillus terreus	44.58	4e-13	65.9
LLPS-Fus-0200	Fusarium solani	44.44	6e-13	65.5
LLPS-Ved-0616	Verticillium dahliae	44.44	1e-13	67.4
LLPS-Fuv-0972	Fusarium verticillioides	44.44	7e-13	65.1
LLPS-Zyt-0727	Zymoseptoria tritici	44.44	4e-13	65.9
LLPS-Scj-0925	Schizosaccharomyces japonicus	43.75	1e-11	61.6
LLPS-Coo-0318	Colletotrichum orbiculare	43.59	9e-13	65.1
LLPS-Asf-0142	Aspergillus flavus	43.53	3e-13	66.2
LLPS-Miv-0174	Microbotryum violaceum	43.48	2e-14	68.9
LLPS-Phn-0694	Phaeosphaeria nodorum	43.42	2e-11	61.2
LLPS-Gag-0907	Gaeumannomyces graminis	42.86	8e-11	59.7
LLPS-Map-0210	Magnaporthe poae	42.86	7e-11	59.7
LLPS-Blg-0127	Blumeria graminis	42.68	2e-11	61.2
LLPS-Cog-0812	Colletotrichum gloeosporioides	42.31	7e-12	62.4
LLPS-Cym-0814	Cyanidioschyzon merolae	42.22	8e-17	75.9
LLPS-Dos-0282	Dothistroma septosporum	42.16	1e-13	67.0
LLPS-Nec-0552	Neurospora crassa	41.98	1e-11	61.6
LLPS-Yal-0584	Yarrowia lipolytica	41.77	4e-09	54.7
LLPS-Cogr-0037	Colletotrichum graminicola	41.03	2e-11	61.6
LLPS-Mao-0302	Magnaporthe oryzae	40.91	4e-12	63.2
LLPS-Pyt-1188	Pyrenophora teres	40.62	5e-13	65.5
LLPS-Pug-0460	Puccinia graminis	40.4	3e-13	66.2
LLPS-Put-1113	Puccinia triticina	40.4	3e-14	69.7
LLPS-Mel-0358	Melampsora laricipopulina	40.23	2e-11	61.2
LLPS-Kop-0632	Komagataella pastoris	40.0	1e-11	61.2
LLPS-Asg-0739	Ashbya gossypii	39.71	8e-08	50.8
LLPS-Lem-0783	Leptosphaeria maculans	38.54	7e-12	62.4
LLPS-Crn-0269	Cryptococcus neoformans	33.33	4e-08	52.0
LLPS-Sac-0139	Saccharomyces cerevisiae	32.95	3e-06	46.2

LLPS-Coc-0717LSM3

Protein Sequence

Nucleotide Sequence

LLPS-Coc-0717
LSM3