Trichoderma virens      Regulator


※ Regulator introduction

    The LLPS of scaffold proteins and the stability of MLOs can be modulated by PTMs and other proteins (1-4). For example, arginine methylation of FUS by PRMT1 or PRMT8 reduces the LLPS of FUS, and both PRMTs were classified as PTM regulators. Also, Buchan et al. conducted a microscopy-based genetic screen of >4000 gene deletions in Saccharomyces cerevisiae, and identified 125 genes to be involved in regulating the stability and formation of P-bodies and/or stress granules (5). None of these proteins have been characterized to undergo LLPS, and here we classified all the 125 proteins as MLO regulators.

References
1. Vernon, R.M. and Forman-Kay, J.D. (2019) First-generation predictors of biological protein phase separation. Current opinion in structural biology 58, 88-96. PMID: 31252218
2. Wang, Z. and Zhang, H. (2019) Phase Separation, Transition, and Autophagic Degradation of Proteins in Development and Pathogenesis. Trends in cell biology, 29, 417-427. PMID: 30826216
3. Alberti, S., Gladfelter, A. and Mittag, T. (2019) Considerations and challenges in studying liquid-liquid phase separation and biomolecular condensates. Cell, 176, 419-434. PMID: 30682370
4. Bergeron-Sandoval, L.P., Safaee, N. and Michnick, S.W. (2016) Mechanisms and Consequences of Macromolecular Phase Separation. Cell, 165, 1067-1079. PMID: 27203111
5. Buchan, J.R., Kolaitis, R.M., Taylor, J.P. and Parker, R. (2013) Eukaryotic stress granules are cleared by autophagy and Cdc48/VCP function. Cell, 176, 419-434. PMID: 23791177


There are 341 genes.  Reviewed (0 or Unreviewed (341

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Trv-0940
TRIVIDRAFT_72371
G9MID0
ALA1
2
LLPS-Trv-1559
TRIVIDRAFT_72131
G9ML11
bip1
3
LLPS-Trv-0927
TRIVIDRAFT_36994
G9MPA4
CDK1
4
LLPS-Trv-0068
TRIVIDRAFT_188272
G9MEC3
CDK9
5
LLPS-Trv-0852
TRIVIDRAFT_73792
G9MFY7
COT1
6
LLPS-Trv-0873
TRIVIDRAFT_78512
G9MVI8
cpc2
7
LLPS-Trv-0220
TRIVIDRAFT_37094
G9MNI8
FEN1
8
LLPS-Trv-0839
TRIVIDRAFT_74050
G9MNN7
INT6
9
LLPS-Trv-1320
TRIVIDRAFT_50053
G9MGI3
LSM1
10
LLPS-Trv-0158
TRIVIDRAFT_74376
G9NDB1
MCM7
11
LLPS-Trv-1155
TRIVIDRAFT_68630
G9MZJ8
MED6
12
LLPS-Trv-0746
TRIVIDRAFT_76057
G9N696
NIP1
13
LLPS-Trv-1384
TRIVIDRAFT_184045
G9N9Q4
PKA1
14
LLPS-Trv-1476
TRIVIDRAFT_219259
G9MJ26
POM1
15
LLPS-Trv-0154
TRIVIDRAFT_89070
G9N515
PRT1
16
LLPS-Trv-1426
TRIVIDRAFT_196625
G9NDT6
PSD1
17
LLPS-Trv-0157
TRIVIDRAFT_74494
G9NCW3
RPS0
18
LLPS-Trv-0925
TRIVIDRAFT_63244
G9MEL9
SPB1
19
LLPS-Trv-0529
TRIVIDRAFT_195559
G9N9P2
TIF32
20
LLPS-Trv-0003
TRIVIDRAFT_82783
G9N965
TIF34
21
LLPS-Trv-0510
TRIVIDRAFT_71507
G9MT02
TIF35
22
LLPS-Trv-0090
TRIVIDRAFT_81493
G9MWC6
TIF6
23
LLPS-Trv-0445
TRIVIDRAFT_83666
G9MW46
tmk3
24
LLPS-Trv-0672
TRIVIDRAFT_56894
G9N9G8
TPK5
25
LLPS-Trv-0872
TRIVIDRAFT_110679
G9MM83
TRIVIDRAFT_110679
26
LLPS-Trv-0629
TRIVIDRAFT_110705
G9MMI7
TRIVIDRAFT_110705
27
LLPS-Trv-1146
TRIVIDRAFT_110710
G9MMX1
TRIVIDRAFT_110710
28
LLPS-Trv-0791
TRIVIDRAFT_110796
G9MIF4
TRIVIDRAFT_110796
29
LLPS-Trv-0075
TRIVIDRAFT_111565
G9N3Q9
TRIVIDRAFT_111565
30
LLPS-Trv-0442
TRIVIDRAFT_111632
G9MPY2
TRIVIDRAFT_111632
31
LLPS-Trv-0259
TRIVIDRAFT_111698
G9N0M5
TRIVIDRAFT_111698
32
LLPS-Trv-1073
TRIVIDRAFT_111915
G9NDR1
TRIVIDRAFT_111915
33
LLPS-Trv-0013
TRIVIDRAFT_111922
G9NDS5
TRIVIDRAFT_111922
34
LLPS-Trv-1311
TRIVIDRAFT_111960
G9MVJ0
TRIVIDRAFT_111960
35
LLPS-Trv-0570
TRIVIDRAFT_112028
G9MKM8
TRIVIDRAFT_112028
36
LLPS-Trv-0794
TRIVIDRAFT_112067
G9MH83
TRIVIDRAFT_112067
37
LLPS-Trv-0859
TRIVIDRAFT_112147
G9MXH8
TRIVIDRAFT_112147
38
LLPS-Trv-0191
TRIVIDRAFT_113185
G9MJG7
TRIVIDRAFT_113185
39
LLPS-Trv-0732
TRIVIDRAFT_113927
G9MEZ4
TRIVIDRAFT_113927
40
LLPS-Trv-0414
TRIVIDRAFT_113935
G9N912
TRIVIDRAFT_113935
41
LLPS-Trv-1048
TRIVIDRAFT_114128
G9MIL8
TRIVIDRAFT_114128
42
LLPS-Trv-0313
TRIVIDRAFT_115017
G9NA76
TRIVIDRAFT_115017
43
LLPS-Trv-0799
TRIVIDRAFT_115925
G9NA61
TRIVIDRAFT_115925
44
LLPS-Trv-0366
TRIVIDRAFT_116107
G9MJ36
TRIVIDRAFT_116107
45
LLPS-Trv-0288
TRIVIDRAFT_116831
G9NAH5
TRIVIDRAFT_116831
46
LLPS-Trv-0828
TRIVIDRAFT_120935
G9N7M4
TRIVIDRAFT_120935
47
LLPS-Trv-0463
TRIVIDRAFT_121456
G9MIX4
TRIVIDRAFT_121456
48
LLPS-Trv-1114
TRIVIDRAFT_121783
G9N9H5
TRIVIDRAFT_121783
49
LLPS-Trv-0092
TRIVIDRAFT_125660
G9N313
TRIVIDRAFT_125660
50
LLPS-Trv-0033
TRIVIDRAFT_126506
G9N383
TRIVIDRAFT_126506
51
LLPS-Trv-1419
TRIVIDRAFT_127939
G9N9Q1
TRIVIDRAFT_127939
52
LLPS-Trv-0755
TRIVIDRAFT_132655
G9N2I6
TRIVIDRAFT_132655
53
LLPS-Trv-0890
TRIVIDRAFT_140706
G9MEM2
TRIVIDRAFT_140706
54
LLPS-Trv-0549
TRIVIDRAFT_146529
G9MLE7
TRIVIDRAFT_146529
55
LLPS-Trv-0153
TRIVIDRAFT_147266
G9MQI8
TRIVIDRAFT_147266
56
LLPS-Trv-0796
TRIVIDRAFT_147373
G9MNE7
TRIVIDRAFT_147373
57
LLPS-Trv-1383
TRIVIDRAFT_148464
G9MP09
TRIVIDRAFT_148464
58
LLPS-Trv-1634
TRIVIDRAFT_152316
G9MVN0
TRIVIDRAFT_152316
59
LLPS-Trv-0879
TRIVIDRAFT_159307
G9N644
TRIVIDRAFT_159307
60
LLPS-Trv-1439
TRIVIDRAFT_160722
G9N751
TRIVIDRAFT_160722
61
LLPS-Trv-0244
TRIVIDRAFT_161348
G9N7P6
TRIVIDRAFT_161348
62
LLPS-Trv-0727
TRIVIDRAFT_163022
G9NA43
TRIVIDRAFT_163022
63
LLPS-Trv-1102
TRIVIDRAFT_164408
G9ND55
TRIVIDRAFT_164408
64
LLPS-Trv-0386
TRIVIDRAFT_165243
G9NCY4
TRIVIDRAFT_165243
65
LLPS-Trv-0475
TRIVIDRAFT_165883
G9MDG9
TRIVIDRAFT_165883
66
LLPS-Trv-0077
TRIVIDRAFT_167067
G9MFZ1
TRIVIDRAFT_167067
67
LLPS-Trv-1021
TRIVIDRAFT_167644
G9MIU5
TRIVIDRAFT_167644
68
LLPS-Trv-0420
TRIVIDRAFT_169007
G9MN12
TRIVIDRAFT_169007
69
LLPS-Trv-0744
TRIVIDRAFT_170223
G9MRF2
TRIVIDRAFT_170223
70
LLPS-Trv-0314
TRIVIDRAFT_171491
G9MZ78
TRIVIDRAFT_171491
71
LLPS-Trv-0057
TRIVIDRAFT_171594
G9MZL5
TRIVIDRAFT_171594
72
LLPS-Trv-0380
TRIVIDRAFT_173105
G9N6S9
TRIVIDRAFT_173105
73
LLPS-Trv-0431
TRIVIDRAFT_173250
G9N769
TRIVIDRAFT_173250
74
LLPS-Trv-1079
TRIVIDRAFT_175391
G9NDD6
TRIVIDRAFT_175391
75
LLPS-Trv-1344
TRIVIDRAFT_176036
G9ME07
TRIVIDRAFT_176036
76
LLPS-Trv-0714
TRIVIDRAFT_176900
G9MG89
TRIVIDRAFT_176900
77
LLPS-Trv-0264
TRIVIDRAFT_177538
G9MJ59
TRIVIDRAFT_177538
78
LLPS-Trv-0329
TRIVIDRAFT_177582
G9MJA2
TRIVIDRAFT_177582
79
LLPS-Trv-1627
TRIVIDRAFT_178078
G9MM77
TRIVIDRAFT_178078
80
LLPS-Trv-0048
TRIVIDRAFT_179162
G9MPC8
TRIVIDRAFT_179162
81
LLPS-Trv-1373
TRIVIDRAFT_180616
G9MWB8
TRIVIDRAFT_180616
82
LLPS-Trv-0864
TRIVIDRAFT_180640
G9MWD2
TRIVIDRAFT_180640
83
LLPS-Trv-0477
TRIVIDRAFT_181110
G9MYT0
TRIVIDRAFT_181110
84
LLPS-Trv-0231
TRIVIDRAFT_181899
G9N232
TRIVIDRAFT_181899
85
LLPS-Trv-1116
TRIVIDRAFT_182770
G9N5W9
TRIVIDRAFT_182770
86
LLPS-Trv-0552
TRIVIDRAFT_183741
G9N8Z8
TRIVIDRAFT_183741
87
LLPS-Trv-1506
TRIVIDRAFT_183763
G9N943
TRIVIDRAFT_183763
88
LLPS-Trv-0793
TRIVIDRAFT_183933
G9N9G1
TRIVIDRAFT_183933
89
LLPS-Trv-1329
TRIVIDRAFT_184054
G9N9S0
TRIVIDRAFT_184054
90
LLPS-Trv-0584
TRIVIDRAFT_184162
G9NA13
TRIVIDRAFT_184162
91
LLPS-Trv-0585
TRIVIDRAFT_185925
G9MLL1
TRIVIDRAFT_185925
92
LLPS-Trv-0088
TRIVIDRAFT_186251
G9MP94
TRIVIDRAFT_186251
93
LLPS-Trv-1568
TRIVIDRAFT_19040
G9N9I6
TRIVIDRAFT_19040
94
LLPS-Trv-1011
TRIVIDRAFT_191384
G9MRF5
TRIVIDRAFT_191384
95
LLPS-Trv-0212
TRIVIDRAFT_193591
G9N1Y0
TRIVIDRAFT_193591
96
LLPS-Trv-1479
TRIVIDRAFT_193985
G9N3N6
TRIVIDRAFT_193985
97
LLPS-Trv-0804
TRIVIDRAFT_194418
G9N564
TRIVIDRAFT_194418
98
LLPS-Trv-0748
TRIVIDRAFT_195019
G9N7N5
TRIVIDRAFT_195019
99
LLPS-Trv-0322
TRIVIDRAFT_196588
G9NDP0
TRIVIDRAFT_196588
100
LLPS-Trv-1326
TRIVIDRAFT_206553
G9NAM0
TRIVIDRAFT_206553
101
LLPS-Trv-0934
TRIVIDRAFT_207688
G9MFH3
TRIVIDRAFT_207688
102
LLPS-Trv-0305
TRIVIDRAFT_207716
G9MDR0
TRIVIDRAFT_207716
103
LLPS-Trv-1293
TRIVIDRAFT_207777
G9ME77
TRIVIDRAFT_207777
104
LLPS-Trv-1225
TRIVIDRAFT_208720
G9MQG5
TRIVIDRAFT_208720
105
LLPS-Trv-0137
TRIVIDRAFT_209722
G9MZ56
TRIVIDRAFT_209722
106
LLPS-Trv-0099
TRIVIDRAFT_209970
G9N220
TRIVIDRAFT_209970
107
LLPS-Trv-0715
TRIVIDRAFT_210592
G9N897
TRIVIDRAFT_210592
108
LLPS-Trv-0300
TRIVIDRAFT_211309
G9MEZ2
TRIVIDRAFT_211309
109
LLPS-Trv-0801
TRIVIDRAFT_211918
G9MIN9
TRIVIDRAFT_211918
110
LLPS-Trv-0737
TRIVIDRAFT_212189
G9MM24
TRIVIDRAFT_212189
111
LLPS-Trv-0110
TRIVIDRAFT_212224
G9MMA8
TRIVIDRAFT_212224
112
LLPS-Trv-0954
TRIVIDRAFT_212842
G9MTJ7
TRIVIDRAFT_212842
113
LLPS-Trv-1203
TRIVIDRAFT_213486
G9MZQ6
TRIVIDRAFT_213486
114
LLPS-Trv-0428
TRIVIDRAFT_213890
G9N3T7
TRIVIDRAFT_213890
115
LLPS-Trv-0698
TRIVIDRAFT_213958
G9N513
TRIVIDRAFT_213958
116
LLPS-Trv-1193
TRIVIDRAFT_21417
G9N3C7
TRIVIDRAFT_21417
117
LLPS-Trv-0001
TRIVIDRAFT_214426
G9N977
TRIVIDRAFT_214426
118
LLPS-Trv-0541
TRIVIDRAFT_214851
G9NCU7
TRIVIDRAFT_214851
119
LLPS-Trv-1294
TRIVIDRAFT_215192
G9MHA7
TRIVIDRAFT_215192
120
LLPS-Trv-0467
TRIVIDRAFT_215651
G9MMY0
TRIVIDRAFT_215651
121
LLPS-Trv-0754
TRIVIDRAFT_215692
G9MKW5
TRIVIDRAFT_215692
122
LLPS-Trv-0682
TRIVIDRAFT_215805
G9MNK7
TRIVIDRAFT_215805
123
LLPS-Trv-0282
TRIVIDRAFT_216043
G9MQZ2
TRIVIDRAFT_216043
124
LLPS-Trv-0851
TRIVIDRAFT_216385
G9MYW5
TRIVIDRAFT_216385
125
LLPS-Trv-0392
TRIVIDRAFT_216446
G9MZW0
TRIVIDRAFT_216446
126
LLPS-Trv-0833
TRIVIDRAFT_216898
G9N7V7
TRIVIDRAFT_216898
127
LLPS-Trv-0561
TRIVIDRAFT_216950
G9N8T1
TRIVIDRAFT_216950
128
LLPS-Trv-1653
TRIVIDRAFT_217026
G9N9H9
TRIVIDRAFT_217026
129
LLPS-Trv-0663
TRIVIDRAFT_217295
G9ND74
TRIVIDRAFT_217295
130
LLPS-Trv-1604
TRIVIDRAFT_217908
G9ME23
TRIVIDRAFT_217908
131
LLPS-Trv-1430
TRIVIDRAFT_223531
G9MXD7
TRIVIDRAFT_223531
132
LLPS-Trv-1268
TRIVIDRAFT_224234
G9MZJ9
TRIVIDRAFT_224234
133
LLPS-Trv-1076
TRIVIDRAFT_230083
G9MLJ0
TRIVIDRAFT_230083
134
LLPS-Trv-0576
TRIVIDRAFT_231280
G9N0D7
TRIVIDRAFT_231280
135
LLPS-Trv-0592
TRIVIDRAFT_231515
G9N2Z1
TRIVIDRAFT_231515
136
LLPS-Trv-0253
TRIVIDRAFT_231685
G9N4N2
TRIVIDRAFT_231685
137
LLPS-Trv-0269
TRIVIDRAFT_231919
G9N6B1
TRIVIDRAFT_231919
138
LLPS-Trv-0480
TRIVIDRAFT_231965
G9N7E3
TRIVIDRAFT_231965
139
LLPS-Trv-1240
TRIVIDRAFT_232075
G9N883
TRIVIDRAFT_232075
140
LLPS-Trv-0565
TRIVIDRAFT_232164
G9N8Z3
TRIVIDRAFT_232164
141
LLPS-Trv-0124
TRIVIDRAFT_232485
G9NBB6
TRIVIDRAFT_232485
142
LLPS-Trv-1374
TRIVIDRAFT_232656
G9NCZ0
TRIVIDRAFT_232656
143
LLPS-Trv-1452
TRIVIDRAFT_232766
G9NDQ1
TRIVIDRAFT_232766
144
LLPS-Trv-0866
TRIVIDRAFT_25244
G9NA10
TRIVIDRAFT_25244
145
LLPS-Trv-0286
TRIVIDRAFT_27889
G9MTC5
TRIVIDRAFT_27889
146
LLPS-Trv-0233
TRIVIDRAFT_28151
G9MTN4
TRIVIDRAFT_28151
147
LLPS-Trv-1095
TRIVIDRAFT_28581
G9MTT3
TRIVIDRAFT_28581
148
LLPS-Trv-0144
TRIVIDRAFT_30419
G9MKY2
TRIVIDRAFT_30419
149
LLPS-Trv-0848
TRIVIDRAFT_30483
G9MMN4
TRIVIDRAFT_30483
150
LLPS-Trv-1458
TRIVIDRAFT_30659
G9ML90
TRIVIDRAFT_30659
151
LLPS-Trv-0910
TRIVIDRAFT_30676
G9MM30
TRIVIDRAFT_30676
152
LLPS-Trv-0598
TRIVIDRAFT_30695
G9MLL5
TRIVIDRAFT_30695
153
LLPS-Trv-0205
TRIVIDRAFT_30887
G9MMU0
TRIVIDRAFT_30887
154
LLPS-Trv-0242
TRIVIDRAFT_31426
G9MMW6
TRIVIDRAFT_31426
155
LLPS-Trv-0120
TRIVIDRAFT_31492
G9MMV2
TRIVIDRAFT_31492
156
LLPS-Trv-0537
TRIVIDRAFT_32792
G9MKC1
TRIVIDRAFT_32792
157
LLPS-Trv-1178
TRIVIDRAFT_32834
G9MJ86
TRIVIDRAFT_32834
158
LLPS-Trv-0384
TRIVIDRAFT_32877
G9MIW3
TRIVIDRAFT_32877
159
LLPS-Trv-0064
TRIVIDRAFT_33441
G9MDX5
TRIVIDRAFT_33441
160
LLPS-Trv-0810
TRIVIDRAFT_34131
G9MDQ7
TRIVIDRAFT_34131
161
LLPS-Trv-0729
TRIVIDRAFT_34701
G9MEE2
TRIVIDRAFT_34701
162
LLPS-Trv-0267
TRIVIDRAFT_34803
G9ME09
TRIVIDRAFT_34803
163
LLPS-Trv-0596
TRIVIDRAFT_35406
G9MH66
TRIVIDRAFT_35406
164
LLPS-Trv-0843
TRIVIDRAFT_35422
G9MHX9
TRIVIDRAFT_35422
165
LLPS-Trv-0189
TRIVIDRAFT_35867
G9MHJ8
TRIVIDRAFT_35867
166
LLPS-Trv-1248
TRIVIDRAFT_36122
G9MHZ4
TRIVIDRAFT_36122
167
LLPS-Trv-0041
TRIVIDRAFT_36186
G9MG19
TRIVIDRAFT_36186
168
LLPS-Trv-0280
TRIVIDRAFT_36326
G9MG12
TRIVIDRAFT_36326
169
LLPS-Trv-0865
TRIVIDRAFT_37526
G9MNI5
TRIVIDRAFT_37526
170
LLPS-Trv-1055
TRIVIDRAFT_37783
G9MN06
TRIVIDRAFT_37783
171
LLPS-Trv-0347
TRIVIDRAFT_38208
G9NDJ2
TRIVIDRAFT_38208
172
LLPS-Trv-0454
TRIVIDRAFT_38279
G9NDD1
TRIVIDRAFT_38279
173
LLPS-Trv-0094
TRIVIDRAFT_38549
G9NDA9
TRIVIDRAFT_38549
174
LLPS-Trv-0756
TRIVIDRAFT_38622
G9NDC6
TRIVIDRAFT_38622
175
LLPS-Trv-0312
TRIVIDRAFT_38658
G9NCF8
TRIVIDRAFT_38658
176
LLPS-Trv-1489
TRIVIDRAFT_38683
G9NCS6
TRIVIDRAFT_38683
177
LLPS-Trv-1534
TRIVIDRAFT_40129
G9NAT5
TRIVIDRAFT_40129
178
LLPS-Trv-0654
TRIVIDRAFT_40290
G9NAG4
TRIVIDRAFT_40290
179
LLPS-Trv-0214
TRIVIDRAFT_40565
G9N8X6
TRIVIDRAFT_40565
180
LLPS-Trv-1287
TRIVIDRAFT_40990
G9N999
TRIVIDRAFT_40990
181
LLPS-Trv-0355
TRIVIDRAFT_41696
G9N8F8
TRIVIDRAFT_41696
182
LLPS-Trv-1502
TRIVIDRAFT_41902
G9N7X1
TRIVIDRAFT_41902
183
LLPS-Trv-0399
TRIVIDRAFT_41964
G9N7S6
TRIVIDRAFT_41964
184
LLPS-Trv-0603
TRIVIDRAFT_42055
G9N7Z0
TRIVIDRAFT_42055
185
LLPS-Trv-0536
TRIVIDRAFT_42099
G9N7J6
TRIVIDRAFT_42099
186
LLPS-Trv-0035
TRIVIDRAFT_42667
G9N6B4
TRIVIDRAFT_42667
187
LLPS-Trv-0741
TRIVIDRAFT_43538
G9N3F6
TRIVIDRAFT_43538
188
LLPS-Trv-0916
TRIVIDRAFT_43582
G9N338
TRIVIDRAFT_43582
189
LLPS-Trv-1275
TRIVIDRAFT_44225
G9N3R2
TRIVIDRAFT_44225
190
LLPS-Trv-0308
TRIVIDRAFT_45560
G9MPP9
TRIVIDRAFT_45560
191
LLPS-Trv-0556
TRIVIDRAFT_45782
G9MPW3
TRIVIDRAFT_45782
192
LLPS-Trv-0594
TRIVIDRAFT_46692
G9N0U8
TRIVIDRAFT_46692
193
LLPS-Trv-1544
TRIVIDRAFT_46989
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