Homo sapiens      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 35 genes.  Reviewed (34 or Unreviewed (1

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Hos-1883
ENSG00000100101.15
V9GYY5
2
LLPS-Hos-1575
ENSG00000176108.9
Q96FZ7
CHMP6
3
LLPS-Hos-1033
ENSG00000111605.17
Q16630
CPSF6
4
LLPS-Hos-2542
ENSG00000051523.10
P13498
CYBA
5
LLPS-Hos-2251
ENSG00000135829.16
Q08211
DHX9
6
LLPS-Hos-1591
ENSG00000083520.14
Q9Y2L1
DIS3
7
LLPS-Hos-2528
ENSG00000120658.13
Q8TC92
ENOX1
8
LLPS-Hos-2601
ENSG00000174137.12
Q6NSI3
FAM53A
9
LLPS-Hos-1967
ENSG00000189319.13
Q14153
FAM53B
10
LLPS-Hos-2145
ENSG00000170345.9
P01100
FOS
11
LLPS-Hos-1390
ENSG00000089280.18
P35637
FUS
12
LLPS-Hos-1687
ENSG00000102145.13
P15976
GATA1
13
LLPS-Hos-0401
ENSG00000126107.14
Q5T447
HECTD3
14
LLPS-Hos-2438
ENSG00000135486.17
P09651
HNRNPA1
15
LLPS-Hos-1612
ENSG00000130518.16
Q9H0B3
IQCN
16
LLPS-Hos-2782
ENSG00000136826.14
O43474
KLF4
17
LLPS-Hos-1497
ENSG00000176619.12
Q03252
LMNB2
18
LLPS-Hos-0189
ENSG00000147140.15
Q15233
NONO
19
LLPS-Hos-1913
ENSG00000100836.10
Q86U42
PABPN1
20
LLPS-Hos-2824
ENSG00000121390.18
Q8WXF1
PSPC1
21
LLPS-Hos-2036
ENSG00000239306.4
Q96PK6
RBM14
22
LLPS-Hos-2495
ENSG00000173933.20
Q9BWF3
RBM4
23
LLPS-Hos-2470
ENSG00000173914.11
Q9BQ04
RBM4B
24
LLPS-Hos-1878
ENSG00000142186.16
Q96KG9
SCYL1
25
LLPS-Hos-0948
ENSG00000116560.10
P23246
SFPQ
26
LLPS-Hos-1654
ENSG00000178188.14
Q9NRF2
SH2B1
27
LLPS-Hos-1377
ENSG00000116754.13
Q05519
SRSF11
28
LLPS-Hos-2689
ENSG00000120948.17
Q13148
TARDBP
29
LLPS-Hos-1770
ENSG00000141510.17
P04637
TP53
30
LLPS-Hos-1166
ENSG00000163945.16
Q2YD98
UVSSA
31
LLPS-Hos-1592
ENSG00000101966.12
P98170
XIAP
32
LLPS-Hos-2106
ENSG00000144161.12
Q8N5P1
ZC3H8
33
LLPS-Hos-2556
ENSG00000172466.15
P17028
ZNF24
34
LLPS-Hos-1240
ENSG00000167685.14
Q8N0Y2
ZNF444
35
LLPS-Hos-3833
ENSG00000258643.5
A6NDY0
PABPN1L