Mus musculus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 117 genes.  Reviewed (36 or Unreviewed (81

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Mum-3526
ENSMUSG00000036698.11
Q8CJG0
Ago2
2
LLPS-Mum-2842
ENSMUSG00000025134.2
O08583
Alyref
3
LLPS-Mum-1848
ENSMUSG00000032409.15
Q9JKK8
Atr
4
LLPS-Mum-1640
ENSMUSG00000078676.9
Q8K3W3
Casc3
5
LLPS-Mum-3856
ENSMUSG00000031292.14
Q3UTQ8
Cdkl5
6
LLPS-Mum-1518
ENSMUSG00000024576.14
Q8BK63
Csnk1a1
7
LLPS-Mum-1401
ENSMUSG00000005483.10
Q9QYJ3
Dnajb1
8
LLPS-Mum-0070
ENSMUSG00000021131.14
P84089
Erh
9
LLPS-Mum-0280
ENSMUSG00000037808.13
Q80XP8
Fam76b
10
LLPS-Mum-0246
ENSMUSG00000030795.18
P56959
Fus
11
LLPS-Mum-1902
ENSMUSG00000021318.15
Q61602
Gli3
12
LLPS-Mum-0688
ENSMUSG00000092232.1
D3Z5F7
Gm20521
13
LLPS-Mum-0561
ENSMUSG00000022812.14
Q9WV60
Gsk3b
14
LLPS-Mum-2872
ENSMUSG00000046434.16
P49312
Hnrnpa1
15
LLPS-Mum-2703
ENSMUSG00000004980.16
O88569
Hnrnpa2b1
16
LLPS-Mum-2748
ENSMUSG00000021546.18
P61979
Hnrnpk
17
LLPS-Mum-3375
ENSMUSG00000029657.15
Q61699
Hsph1
18
LLPS-Mum-2960
ENSMUSG00000032178.14
Q9Z1X4
Ilf3
19
LLPS-Mum-1934
ENSMUSG00000018362.14
P52293
Kpna2
20
LLPS-Mum-2291
ENSMUSG00000031311.17
Q99K48
Nono
21
LLPS-Mum-1262
ENSMUSG00000026751.14
P33242
Nr5a1
22
LLPS-Mum-1038
ENSMUSG00000030271.14
O08760
Ogg1
23
LLPS-Mum-0768
ENSMUSG00000051695.6
P60335
Pcbp1
24
LLPS-Mum-2372
ENSMUSG00000021938.12
Q8R326
Pspc1
25
LLPS-Mum-1978
ENSMUSG00000006498.16
P17225
Ptbp1
26
LLPS-Mum-2542
ENSMUSG00000028820.13
Q8VIJ6
Sfpq
27
LLPS-Mum-0414
ENSMUSG00000063511.11
Q62376
Snrnp70
28
LLPS-Mum-1361
ENSMUSG00000057522.15
Q6ZWS8
Spop
29
LLPS-Mum-2451
ENSMUSG00000018379.17
Q6PDM2
Srsf1
30
LLPS-Mum-0646
ENSMUSG00000028676.17
Q9R0U0
Srsf10
31
LLPS-Mum-0075
ENSMUSG00000034120.18
Q62093
Srsf2
32
LLPS-Mum-0859
ENSMUSG00000071172.13
P84104
Srsf3
33
LLPS-Mum-2186
ENSMUSG00000026021.15
P63166
Sumo1
34
LLPS-Mum-2167
ENSMUSG00000007613.15
Q64729
Tgfbr1
35
LLPS-Mum-0328
ENSMUSG00000022858.16
P62996
Tra2b
36
LLPS-Mum-2849
ENSMUSG00000027288.16
O88466
Znf106
37
LLPS-Mum-3541
ENSMUSG00000026851.9
Q3TQI7
38
LLPS-Mum-3506
ENSMUSG00000059708.12
A2A3V1
Akap17b
39
LLPS-Mum-0742
ENSMUSG00000031635.14
Q9QZ10
Anxa10
40
LLPS-Mum-1859
ENSMUSG00000032231.14
P07356
Anxa2
41
LLPS-Mum-0697
ENSMUSG00000029404.15
Q9JM93
Arl6ip4
42
LLPS-Mum-3719
ENSMUSG00000005687.14
Q9D287
Bcas2
43
LLPS-Mum-3358
ENSMUSG00000032185.15
Q9WVG6
Carm1
44
LLPS-Mum-0754
ENSMUSG00000027829.15
Q52KE7
Ccnl1
45
LLPS-Mum-1457
ENSMUSG00000023932.9
Q6A068
Cdc5l
46
LLPS-Mum-1043
ENSMUSG00000019942.13
P11440
Cdk1
47
LLPS-Mum-0585
ENSMUSG00000069089.8
Q03147
Cdk7
48
LLPS-Mum-0201
ENSMUSG00000009555.16
Q99J95
Cdk9
49
LLPS-Mum-0933
ENSMUSG00000068917.12
O35491
Clk2
50
LLPS-Mum-1107
ENSMUSG00000040782.12
Q9R1A8
Cop1
51
LLPS-Mum-0308
ENSMUSG00000027649.15
Q9CWL8
Ctnnbl1
52
LLPS-Mum-0441
ENSMUSG00000019432.15
Q9Z1N5
Ddx39b
53
LLPS-Mum-2615
ENSMUSG00000021500.17
Q569Z5
Ddx46
54
LLPS-Mum-2304
ENSMUSG00000022718.12
Q9EQM6
Dgcr8
55
LLPS-Mum-1003
ENSMUSG00000034278.3
Q91WT4
Dnajc17
56
LLPS-Mum-3320
ENSMUSG00000016526.8
Q922Y0
Dyrk3
57
LLPS-Mum-5006
ENSMUSG00000028017.7
P01132
Egf
58
LLPS-Mum-1863
ENSMUSG00000006920.14
P70351
Ezh1
59
LLPS-Mum-4085
ENSMUSG00000046761.12
Q148V8
Fam83h
60
LLPS-Mum-0715
ENSMUSG00000034023.16
Q80V62
Fancd2
61
LLPS-Mum-3547
ENSMUSG00000039187.16
Q8K368
Fanci
62
LLPS-Mum-4282
ENSMUSG00000066640.11
E9PYR1
Fbxl18
63
LLPS-Mum-3815
ENSMUSG00000031565.18
P16092
Fgfr1
64
LLPS-Mum-4877
ENSMUSG00000024816.12
Q3UFK8
Frmd8
65
LLPS-Mum-4290
ENSMUSG00000022800.14
Q91Z49
Fyttd1
66
LLPS-Mum-1874
ENSMUSG00000021109.13
Q61221
Hif1a
67
LLPS-Mum-4305
ENSMUSG00000004328.15
Q0VBL6
Hif3a
68
LLPS-Mum-2499
ENSMUSG00000061436.15
Q9QZR5
Hipk2
69
LLPS-Mum-2692
ENSMUSG00000001016.12
Q9CXY6
Ilf2
70
LLPS-Mum-2453
ENSMUSG00000023150.14
Q920Q8
Ivns1abp
71
LLPS-Mum-0238
ENSMUSG00000024188.16
Q9CYI4
Luc7l
72
LLPS-Mum-0017
ENSMUSG00000029823.16
Q7TNC4
Luc7l2
73
LLPS-Mum-0977
ENSMUSG00000028609.6
P61327
Magoh
74
LLPS-Mum-4508
ENSMUSG00000034744.13
Q9QZ08
Nagk
75
LLPS-Mum-2329
ENSMUSG00000003421.13
Q9D6T0
Nosip
76
LLPS-Mum-3540
ENSMUSG00000037958.13
Q5NCR9
Nsrp1
77
LLPS-Mum-1057
ENSMUSG00000009772.15
Q8BZN4
Nuak2
78
LLPS-Mum-4022
ENSMUSG00000036353.13
Q9CPV9
P2ry12
79
LLPS-Mum-0800
ENSMUSG00000027998.11
Q922V4
Plrg1
80
LLPS-Mum-0707
ENSMUSG00000020994.5
O35691
Pnn
81
LLPS-Mum-4696
ENSMUSG00000042133.16
A2AR02
Ppig
82
LLPS-Mum-1295
ENSMUSG00000024735.13
Q99KP6
Prpf19
83
LLPS-Mum-0368
ENSMUSG00000020850.14
Q99PV0
Prpf8
84
LLPS-Mum-4381
ENSMUSG00000060073.9
O70435
Psma3
85
LLPS-Mum-4136
ENSMUSG00000039844.19
Q3UHC1
Rapgef1
86
LLPS-Mum-2924
ENSMUSG00000037197.11
Q8JZX4
Rbm17
87
LLPS-Mum-0717
ENSMUSG00000031107.6
Q8R0F5
Rbmx2
88
LLPS-Mum-4019
ENSMUSG00000008482.9
Q9CQ29
Rnf151
89
LLPS-Mum-2511
ENSMUSG00000034681.17
Q99M28
Rnps1
90
LLPS-Mum-1543
ENSMUSG00000051255.5
Q9D1J3
Sarnp
91
LLPS-Mum-1551
ENSMUSG00000024949.17
Q64213
Sf1
92
LLPS-Mum-1020
ENSMUSG00000002129.11
Q8K4Z5
Sf3a1
93
LLPS-Mum-0676
ENSMUSG00000020211.15
Q62203
Sf3a2
94
LLPS-Mum-0526
ENSMUSG00000028902.4
Q9D554
Sf3a3
95
LLPS-Mum-1260
ENSMUSG00000025982.13
Q99NB9
Sf3b1
96
LLPS-Mum-2371
ENSMUSG00000032402.12
Q8BUN5
Smad3
97
LLPS-Mum-1076
ENSMUSG00000003660.10
Q6P4T2
Snrnp200
98
LLPS-Mum-3395
ENSMUSG00000029402.8
Q9D384
Snrnp35
99
LLPS-Mum-2108
ENSMUSG00000061479.15
Q62189
Snrpa
100
LLPS-Mum-1730
ENSMUSG00000030512.13
P57784
Snrpa1
101
LLPS-Mum-0322
ENSMUSG00000008333.12
Q9CQI7
Snrpb2
102
LLPS-Mum-2247
ENSMUSG00000022961.18
Q9QX47
Son
103
LLPS-Mum-0293
ENSMUSG00000039218.17
Q8BTI8
Srrm2
104
LLPS-Mum-0897
ENSMUSG00000055436.18
E9Q6E5
Srsf11
105
LLPS-Mum-2298
ENSMUSG00000028911.16
Q8VE97
Srsf4
106
LLPS-Mum-2170
ENSMUSG00000024097.11
Q8BL97
Srsf7
107
LLPS-Mum-0193
ENSMUSG00000029538.14
Q9D0B0
Srsf9
108
LLPS-Mum-2071
ENSMUSG00000004040.16
P42227
Stat3
109
LLPS-Mum-3666
ENSMUSG00000037321.17
P21958
Tap1
110
LLPS-Mum-4593
ENSMUSG00000027677.17
Q9CSP9
Ttc14
111
LLPS-Mum-0076
ENSMUSG00000030435.16
P26369
U2af2
112
LLPS-Mum-1753
ENSMUSG00000032407.14
Q6NV83
U2surp
113
LLPS-Mum-1192
ENSMUSG00000020290.14
Q6P5F9
Xpo1
114
LLPS-Mum-0147
ENSMUSG00000035851.14
E9Q5K9
Ythdc1
115
LLPS-Mum-1387
ENSMUSG00000102976.6
Q6NZF1
Zc3h11a
116
LLPS-Mum-2781
ENSMUSG00000045251.13
E9Q5M9
Zfp688
117
LLPS-Mum-3483
ENSMUSG00000094870.8
Q8K3J5
Znf131