Brassica napus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 64 genes.  Reviewed (0 or Unreviewed (64

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Brn-0321
GSBRNA2T00126360001
2
LLPS-Brn-0373
GSBRNA2T00129998001
3
LLPS-Brn-1070
GSBRNA2T00089005001
4
LLPS-Brn-2019
GSBRNA2T00144181001
5
LLPS-Brn-2126
GSBRNA2T00143175001
6
LLPS-Brn-1450
GSBRNA2T00056346001
A0A078H9H5
BnaA01g14100D
7
LLPS-Brn-1661
GSBRNA2T00092246001
A0A078IGC2
BnaA01g22770D
8
LLPS-Brn-2744
GSBRNA2T00083392001
A0A078IAH4
BnaA01g23100D
9
LLPS-Brn-0754
GSBRNA2T00101395001
A0A078FVQ7
BnaA01g26950D
10
LLPS-Brn-3158
GSBRNA2T00055438001
A0A078HAR1
BnaA02g30590D
11
LLPS-Brn-0979
GSBRNA2T00049316001
A0A078FGT1
BnaA03g01190D
12
LLPS-Brn-1604
GSBRNA2T00066700001
A0A078HNA5
BnaA03g13200D
13
LLPS-Brn-2021
GSBRNA2T00120969001
A0A078HML1
BnaA03g13280D
14
LLPS-Brn-1436
GSBRNA2T00108132001
A0A078FU64
BnaA04g11880D
15
LLPS-Brn-0725
GSBRNA2T00066992001
A0A078HM18
BnaA04g13630D
16
LLPS-Brn-0019
GSBRNA2T00045291001
A0A078GZK3
BnaA04g15740D
17
LLPS-Brn-1798
GSBRNA2T00048521001
A0A078FBH8
BnaA05g12150D
18
LLPS-Brn-0930
GSBRNA2T00082041001
A0A078I3K2
BnaA05g12710D
19
LLPS-Brn-1624
GSBRNA2T00120129001
A0A078GH90
BnaA05g30580D
20
LLPS-Brn-1494
GSBRNA2T00007242001
A0A078INB1
BnaA05g34990D
21
LLPS-Brn-1609
GSBRNA2T00033786001
A0A078J836
BnaA05g35180D
22
LLPS-Brn-0796
GSBRNA2T00119266001
A0A078F4Z8
BnaA06g15440D
23
LLPS-Brn-2216
GSBRNA2T00125446001
A0A078F4X9
BnaA06g15740D
24
LLPS-Brn-1324
GSBRNA2T00051196001
A0A078JEJ8
BnaA06g37780D
25
LLPS-Brn-2549
GSBRNA2T00152586001
A0A078G6G6
BnaA09g00790D
26
LLPS-Brn-2470
GSBRNA2T00146004001
A0A078G516
BnaA09g04710D
27
LLPS-Brn-0222
GSBRNA2T00005804001
A0A078G243
BnaA09g06770D
28
LLPS-Brn-1592
GSBRNA2T00092563001
A0A078IIK2
BnaA09g10790D
29
LLPS-Brn-0122
GSBRNA2T00070525001
A0A078FIQ1
BnaA09g14050D
30
LLPS-Brn-0211
GSBRNA2T00020571001
A0A078J441
BnaA09g52620D
31
LLPS-Brn-2423
GSBRNA2T00087867001
A0A078J4S6
BnaA09g54590D
32
LLPS-Brn-0585
GSBRNA2T00138423001
A0A078H373
BnaA10g12460D
33
LLPS-Brn-0675
GSBRNA2T00133160001
A0A078H436
BnaA10g12880D
34
LLPS-Brn-3147
GSBRNA2T00011273001
A0A078IWF0
BnaAnng12550D
35
LLPS-Brn-0269
GSBRNA2T00011322001
A0A078IXJ0
BnaAnng12660D
36
LLPS-Brn-1076
GSBRNA2T00056090001
A0A078H945
BnaC01g28720D
37
LLPS-Brn-2818
GSBRNA2T00044471001
A0A078GTW4
BnaC01g40530D
38
LLPS-Brn-0598
GSBRNA2T00069045001
A0A078HNL0
BnaC02g00100D
39
LLPS-Brn-0849
GSBRNA2T00119712001
A0A078FI39
BnaC02g02070D
40
LLPS-Brn-1500
GSBRNA2T00140640001
A0A078IZH6
BnaC02g44170D
41
LLPS-Brn-2358
GSBRNA2T00147648001
A0A078IXK9
BnaC02g48610D
42
LLPS-Brn-2257
GSBRNA2T00019155001
A0A078GB25
BnaC03g23660D
43
LLPS-Brn-0852
GSBRNA2T00079715001
A0A078I2E7
BnaC03g24140D
44
LLPS-Brn-3116
GSBRNA2T00150616001
A0A078FBK3
BnaC03g58030D
45
LLPS-Brn-1884
GSBRNA2T00150822001
A0A078FCH5
BnaC03g59760D
46
LLPS-Brn-0230
GSBRNA2T00024087001
A0A078GF61
BnaC04g43700D
47
LLPS-Brn-0837
GSBRNA2T00085426001
A0A078FLB2
BnaC05g01090D
48
LLPS-Brn-0494
GSBRNA2T00072422001
A0A078HWE7
BnaC05g10840D
49
LLPS-Brn-0803
GSBRNA2T00068182001
A0A078HQL2
BnaC05g11480D
50
LLPS-Brn-1569
GSBRNA2T00139729001
A0A078HQG5
BnaC05g12680D
51
LLPS-Brn-2559
GSBRNA2T00047818001
A0A078H3Y2
BnaC05g16220D
52
LLPS-Brn-3392
GSBRNA2T00113756001
A0A078F998
BnaC05g23550D
53
LLPS-Brn-1647
GSBRNA2T00034743001
A0A078GI38
BnaC06g10860D
54
LLPS-Brn-1795
GSBRNA2T00060162001
A0A078E4A9
BnaC06g27720D
55
LLPS-Brn-0708
GSBRNA2T00130955001
A0A078G826
BnaC07g06570D
56
LLPS-Brn-2131
GSBRNA2T00134932001
A0A078GZ31
BnaC07g16560D
57
LLPS-Brn-1790
GSBRNA2T00031408001
A0A078F5K3
BnaC07g33310D
58
LLPS-Brn-1912
GSBRNA2T00001198001
A0A078FB48
BnaC08g09970D
59
LLPS-Brn-3258
GSBRNA2T00156151001
A0A078G7S4
BnaC08g13850D
60
LLPS-Brn-1353
GSBRNA2T00019290001
A0A078GB88
BnaC08g42550D
61
LLPS-Brn-0957
GSBRNA2T00016082001
A0A078G9D3
BnaC09g46800D
62
LLPS-Brn-2071
GSBRNA2T00116876001
A0A078ICU7
BnaCnng15380D
63
LLPS-Brn-2147
GSBRNA2T00143473001
A0A078IM96
BnaCnng20140D
64
LLPS-Brn-0057
GSBRNA2T00003903001
A0A078JYE0
BnaCnng68640D