LLPS-Brn-2818
BnaC01g40530D
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | BnaC01g40530D protein |
| Gene Name: | BnaC01g40530D, GSBRNA2T00044471001 |
| Ensembl Gene: | GSBRNA2T00044471001 |
| Ensembl Protein: | CDY29955 |
| Organism: | Brassica napus |
| Taxa ID: | 3708 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nuclear speckle | Predicted from orthologs | (View) |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | CDY29955 | CDY29955 |
| UniProt | A0A078GTW4, A0A078GTW4_BRANA | |
| GeneBank | LK032247 | CDY29955.1 |
| RefSeq | XM_013873939.1 | XP_013729393.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MPSPPTTTSL SVTQTINGSH SFTIKGYSLA KGIGIGKHIA SDTFTVGGYE WAIYFYPDGK 60 61 NPEDNSAYVS VFIALASDGT DVRALFELSL LDQSGKGKHK VHSHFDRALE SGPYTLKYRG 120 121 SMWGYKRFFR RTLLEASDYL KDDCLKINCT VGVVVSEIDC PRLHSIHVPA SDIGSHFGML 180 181 LENEDGSDIT FNVSGEKFRA HRLVLAARSP VFESEFLDVI GEAEERDIEV TDMEPKVFKA 240 241 LLHYIYKDAL IEDAETVSSS GSSVGPSASD TLAAKLLGAA DKYKLPRLSL MCESVLCKDI 300 301 SVDSVANILA LADRYNASAL KSVCLKFAAE NLIAVMRSDG FDYLREHCPS LQSELLKTVA 360 361 GCEEELSGGG GGGGKTRSVW GQFSDGGADT NERSVRQQQQ QHAWGEVNGA ERSQSVWVQV 420 421 VNANASGRNN DDDNNNENGD DDDDPMAED 449 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGCCGTCAC CACCGACGAC GACTTCCCTC TCCGTCACGC AAACCATAAA CGGATCCCAC 60 61 AGCTTCACGA TCAAAGGCTA CTCTCTAGCC AAAGGAATCG GGATCGGGAA ACACATCGCG 120 121 AGCGACACGT TCACCGTCGG CGGGTACGAG TGGGCCATCT ACTTCTACCC CGACGGCAAG 180 181 AATCCAGAGG ATAACTCGGC GTACGTCTCT GTTTTTATTG CGTTGGCTAG CGATGGGACC 240 241 GATGTGAGGG CGTTGTTCGA GCTGTCGTTG CTGGATCAGA GTGGGAAAGG GAAGCATAAG 300 301 GTTCATAGTC ATTTTGATCG TGCTCTTGAG AGTGGGCCTT ATACTCTTAA GTATCGTGGT 360 361 AGCATGTGGG GATACAAACG CTTTTTTAGA AGAACTCTAC TAGAAGCATC TGATTATCTC 420 421 AAGGACGACT GTCTGAAGAT CAACTGCACC GTGGGAGTTG TGGTCTCCGA AATAGACTGC 480 481 CCACGCTTAC ACTCCATCCA CGTCCCTGCT TCTGACATTG GATCTCACTT CGGAATGCTT 540 541 CTTGAGAACG AGGACGGTTC AGATATAACC TTCAACGTCT CCGGTGAAAA GTTCCGTGCT 600 601 CACAGGCTTG TGTTAGCTGC TCGGTCTCCC GTCTTCGAAA GCGAGTTTCT CGATGTTATT 660 661 GGAGAAGCAG AAGAGCGTGA TATCGAAGTT ACAGACATGG AACCAAAGGT TTTCAAGGCT 720 721 TTGCTTCATT ACATATACAA AGATGCTCTC ATCGAAGATG CGGAGACAGT ATCATCTTCT 780 781 GGCTCTTCCG TTGGTCCATC AGCATCAGAT ACATTAGCTG CAAAGCTGTT AGGAGCTGCT 840 841 GATAAGTACA AGTTGCCTAG ACTTAGCTTA ATGTGCGAGT CAGTGCTCTG CAAGGATATA 900 901 TCAGTAGACT CCGTTGCTAA TATACTAGCA CTTGCTGACC GTTACAATGC TTCTGCCTTG 960 961 AAATCAGTTT GTCTGAAATT CGCAGCGGAA AATCTCATTG CTGTTATGAG ATCAGATGGG 1020 1021 TTTGATTATC TGAGAGAACA CTGCCCATCA CTCCAGTCTG AGCTTCTCAA AACAGTTGCT 1080 1081 GGATGTGAAG AGGAGTTAAG CGGAGGAGGA GGGGGAGGAG GGAAGACGAG AAGCGTGTGG 1140 1141 GGGCAGTTCT CAGACGGTGG AGCTGACACA AACGAGAGGA GCGTTAGGCA ACAACAACAG 1200 1201 CAACATGCTT GGGGAGAGGT CAATGGAGCA GAGAGAAGCC AGAGTGTTTG GGTTCAAGTT 1260 1261 GTGAACGCTA ATGCAAGCGG TAGAAACAAC GATGATGATA ATAACAACGA GAATGGTGAT 1320 1321 GATGACGACG ACCCCATGGC AGAAGATTGA 1350 |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Bro-1698 | Brassica oleracea | 100.0 | 0.0 | 795 |
| LLPS-Arl-2482 | Arabidopsis lyrata | 91.26 | 0.0 | 734 |
| LLPS-Mae-2207 | Manihot esculenta | 76.34 | 0.0 | 604 |
| LLPS-Phv-0830 | Phaseolus vulgaris | 75.24 | 0.0 | 587 |
| LLPS-Thc-2330 | Theobroma cacao | 74.41 | 0.0 | 568 |
| LLPS-Nia-0834 | Nicotiana attenuata | 74.15 | 0.0 | 565 |
| LLPS-Pot-1900 | Populus trichocarpa | 73.9 | 0.0 | 592 |
| LLPS-Gor-1388 | Gossypium raimondii | 73.37 | 0.0 | 561 |
| LLPS-Sot-2017 | Solanum tuberosum | 72.85 | 0.0 | 549 |
| LLPS-Sol-1634 | Solanum lycopersicum | 72.14 | 0.0 | 548 |
| LLPS-Mua-0270 | Musa acuminata | 71.8 | 0.0 | 537 |
| LLPS-Coc-1833 | Corchorus capsularis | 71.8 | 0.0 | 554 |
| LLPS-Met-1730 | Medicago truncatula | 70.83 | 0.0 | 547 |
| LLPS-Orp-0993 | Oryza punctata | 70.15 | 0.0 | 539 |
| LLPS-Zem-1368 | Zea mays | 69.39 | 0.0 | 535 |
| LLPS-Cus-2078 | Cucumis sativus | 66.93 | 5e-174 | 501 |
| LLPS-Sem-0041 | Selaginella moellendorffii | 65.01 | 1e-173 | 500 |
| LLPS-Glm-0726 | Glycine max | 63.8 | 1e-161 | 469 |
| LLPS-Php-2475 | Physcomitrella patens | 63.71 | 8e-167 | 483 |
| LLPS-Dac-1047 | Daucus carota | 61.51 | 2e-137 | 405 |
| LLPS-Vir-1298 | Vigna radiata | 61.45 | 5e-147 | 432 |
| LLPS-Hea-0101 | Helianthus annuus | 61.16 | 1e-149 | 439 |
| LLPS-Viv-0832 | Vitis vinifera | 59.78 | 5e-152 | 445 |
| LLPS-Hov-0434 | Hordeum vulgare | 58.21 | 6e-140 | 414 |
| LLPS-Via-1223 | Vigna angularis | 57.47 | 3e-125 | 376 |
| LLPS-Amt-2113 | Amborella trichopoda | 57.14 | 2e-147 | 433 |
| LLPS-Orbr-2162 | Oryza brachyantha | 56.53 | 3e-140 | 415 |
| LLPS-Prp-2198 | Prunus persica | 55.22 | 2e-143 | 424 |
| LLPS-Brr-2838 | Brassica rapa | 54.43 | 6e-139 | 411 |
| LLPS-Art-1982 | Arabidopsis thaliana | 54.38 | 1e-140 | 416 |
| LLPS-Lep-0707 | Leersia perrieri | 42.03 | 4e-77 | 251 |
| LLPS-Sei-2515 | Setaria italica | 41.95 | 1e-73 | 242 |
| LLPS-Sob-1986 | Sorghum bicolor | 40.73 | 4e-73 | 241 |
| LLPS-Orgl-0568 | Oryza glumaepatula | 40.35 | 6e-68 | 226 |
| LLPS-Brd-0661 | Brachypodium distachyon | 39.48 | 2e-68 | 229 |
| LLPS-Orb-1863 | Oryza barthii | 39.18 | 2e-63 | 224 |
| LLPS-Ori-2216 | Oryza indica | 39.18 | 5e-67 | 225 |
| LLPS-Ors-2127 | Oryza sativa | 39.18 | 4e-67 | 225 |
| LLPS-Org-0929 | Oryza glaberrima | 39.18 | 1e-66 | 224 |
| LLPS-Tra-0480 | Triticum aestivum | 39.07 | 3e-70 | 233 |
| LLPS-Tru-1311 | Triticum urartu | 38.79 | 8e-68 | 226 |
| LLPS-Orr-1712 | Oryza rufipogon | 38.78 | 3e-65 | 220 |
| LLPS-Orm-1922 | Oryza meridionalis | 38.52 | 2e-60 | 215 |
| LLPS-Orni-1561 | Oryza nivara | 38.14 | 7e-65 | 226 |
| LLPS-Ere-1026 | Erinaceus europaeus | 32.87 | 1e-37 | 145 |
| LLPS-Anc-2328 | Anolis carolinensis | 32.43 | 2e-43 | 162 |
| LLPS-Fud-3129 | Fukomys damarensis | 32.13 | 4e-43 | 162 |
| LLPS-Aim-0973 | Ailuropoda melanoleuca | 31.87 | 8e-42 | 158 |
| LLPS-Man-0843 | Macaca nemestrina | 31.87 | 5e-42 | 159 |
| LLPS-Meg-0898 | Meleagris gallopavo | 31.87 | 1e-41 | 157 |
| LLPS-Caj-0425 | Callithrix jacchus | 31.83 | 1e-42 | 160 |
| LLPS-Gog-1253 | Gorilla gorilla | 31.83 | 1e-42 | 160 |
| LLPS-Cea-0731 | Cercocebus atys | 31.83 | 8e-43 | 160 |
| LLPS-Aon-1776 | Aotus nancymaae | 31.83 | 1e-42 | 160 |
| LLPS-Maf-4274 | Macaca fascicularis | 31.83 | 7e-43 | 161 |
| LLPS-Ora-1698 | Ornithorhynchus anatinus | 31.83 | 2e-41 | 157 |
| LLPS-Paa-3705 | Papio anubis | 31.83 | 8e-43 | 160 |
| LLPS-Mal-0929 | Mandrillus leucophaeus | 31.83 | 8e-43 | 160 |
| LLPS-Dio-0761 | Dipodomys ordii | 31.83 | 4e-43 | 162 |
| LLPS-Rhb-4703 | Rhinopithecus bieti | 31.83 | 8e-43 | 161 |
| LLPS-Pes-3705 | Pelodiscus sinensis | 31.83 | 4e-42 | 159 |
| LLPS-Hos-0309 | Homo sapiens | 31.83 | 1e-42 | 160 |
| LLPS-Pat-4313 | Pan troglodytes | 31.83 | 1e-42 | 160 |
| LLPS-Pap-3600 | Pan paniscus | 31.83 | 1e-42 | 160 |
| LLPS-Nol-1900 | Nomascus leucogenys | 31.83 | 1e-42 | 160 |
| LLPS-Cas-3840 | Carlito syrichta | 31.83 | 1e-42 | 160 |
| LLPS-Mam-1770 | Macaca mulatta | 31.83 | 7e-43 | 161 |
| LLPS-Poa-4159 | Pongo abelii | 31.83 | 1e-42 | 160 |
| LLPS-Cap-1527 | Cavia porcellus | 31.83 | 1e-42 | 160 |
| LLPS-Sah-0505 | Sarcophilus harrisii | 31.53 | 9e-41 | 155 |
| LLPS-Mum-4164 | Mus musculus | 31.53 | 1e-41 | 158 |
| LLPS-Mea-3346 | Mesocricetus auratus | 31.53 | 1e-41 | 157 |
| LLPS-Orc-0391 | Oryctolagus cuniculus | 31.53 | 3e-42 | 159 |
| LLPS-Fia-0293 | Ficedula albicollis | 31.53 | 3e-42 | 159 |
| LLPS-Anp-2366 | Anas platyrhynchos | 31.53 | 3e-42 | 159 |
| LLPS-Loa-1011 | Loxodonta africana | 31.53 | 5e-42 | 159 |
| LLPS-Ict-1681 | Ictidomys tridecemlineatus | 31.53 | 2e-42 | 160 |
| LLPS-Gaga-1245 | Gallus gallus | 31.53 | 3e-42 | 159 |
| LLPS-Asm-2250 | Astyanax mexicanus | 31.44 | 5e-41 | 155 |
| LLPS-Pof-4071 | Poecilia formosa | 31.03 | 2e-32 | 132 |
| LLPS-Sus-1212 | Sus scrofa | 31.02 | 5e-40 | 153 |
| LLPS-Mup-3120 | Mustela putorius furo | 31.02 | 2e-39 | 152 |
| LLPS-Myl-2573 | Myotis lucifugus | 31.02 | 2e-39 | 151 |
| LLPS-Ova-1189 | Ovis aries | 31.02 | 5e-39 | 150 |
| LLPS-Bot-4477 | Bos taurus | 31.02 | 5e-39 | 150 |
| LLPS-Tut-1759 | Tursiops truncatus | 31.02 | 4e-40 | 153 |
| LLPS-Urm-2271 | Ursus maritimus | 31.02 | 8e-40 | 152 |
| LLPS-Fec-3753 | Felis catus | 31.02 | 8e-40 | 152 |
| LLPS-Caf-3783 | Canis familiaris | 31.02 | 8e-40 | 152 |
| LLPS-Eqc-4719 | Equus caballus | 31.02 | 8e-40 | 152 |
| LLPS-Tag-2811 | Taeniopygia guttata | 30.95 | 6e-42 | 158 |
| LLPS-Orl-1515 | Oryzias latipes | 30.9 | 9e-46 | 168 |
| LLPS-Leo-0563 | Lepisosteus oculatus | 30.9 | 5e-45 | 166 |
| LLPS-Gaa-0907 | Gasterosteus aculeatus | 30.9 | 3e-45 | 167 |
| LLPS-Xim-0641 | Xiphophorus maculatus | 30.9 | 4e-45 | 167 |
| LLPS-Tar-2567 | Takifugu rubripes | 30.9 | 2e-45 | 167 |
| LLPS-Orn-3217 | Oreochromis niloticus | 30.9 | 4e-45 | 167 |
| LLPS-Xet-1061 | Xenopus tropicalis | 30.9 | 5e-44 | 164 |
| LLPS-Ten-0750 | Tetraodon nigroviridis | 30.9 | 2e-45 | 167 |
| LLPS-Scf-3679 | Scleropages formosus | 30.63 | 1e-39 | 152 |
| LLPS-Dar-2183 | Danio rerio | 30.63 | 9e-40 | 152 |
| LLPS-Lac-0725 | Latimeria chalumnae | 30.62 | 3e-43 | 161 |
| LLPS-Chs-3745 | Chlorocebus sabaeus | 30.54 | 4e-28 | 117 |
| LLPS-Cii-1752 | Ciona intestinalis | 30.42 | 3e-44 | 164 |
| LLPS-Icp-3615 | Ictalurus punctatus | 30.34 | 2e-43 | 162 |
| LLPS-Ran-3642 | Rattus norvegicus | 30.34 | 1e-43 | 162 |
| LLPS-Otg-4451 | Otolemur garnettii | 30.34 | 1e-43 | 162 |
| LLPS-Scm-3473 | Scophthalmus maximus | 30.33 | 6e-39 | 150 |
| LLPS-Mod-2012 | Monodelphis domestica | 30.06 | 1e-42 | 161 |
| LLPS-Drm-0578 | Drosophila melanogaster | 29.94 | 2e-36 | 147 |
| LLPS-Cis-1666 | Ciona savignyi | 26.49 | 7e-33 | 132 |
| LLPS-Cae-0342 | Caenorhabditis elegans | 24.61 | 1e-12 | 73.6 |