• Disorder
  • Domain
  • PTM
  • Variation
  • Mutation
  • Interaction
  • Disease
  • Drug
  • Physicochemical
  • Function
  • Proteomics
  • Structure
  • Localization
  • Expression
  • Element
  • Methylation

LLPS-Pot-0068
POPTR_010G024400

Integrated Annotations

▼ OVERVIEW


Status: Unreviewed
Protein Name: 60S ribosome subunit biogenesis protein NIP7 homolog
Gene Name: POPTR_010G024400
Ensembl Gene: POPTR_010G024400v3
Ensembl Protein: PNT14317
Organism: Populus trichocarpa
Taxa ID: 3694
LLPS Type: Others


▼ PROPERTY



——— Disorder propensity (calculated by IUPred2A)

▼ Classification


Condensates:
CondensateEvidenceOrthologs
Nucleolus, Stress granulePredicted from orthologs(View)

▼ FUNCTION


Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly.

▼ CROSS REFERENCE


DatabaseNucleotide IDProtein ID
EnsemblPNT14317PNT14317
UniProtB9HSB9, B9HSB9_POPTR
GeneBankCM009299PNT14317.1
RefSeqXM_002315522.2XP_002315558.1

▼ SEQUENCE


Protein Sequence (FASTA)
1     MRPLDEKEMG  EVFKKLMLFT  GNNLKNIIES  PSHEGPDPNP  GRYCFRLHKN  KVFYISESIV  60
61    KRATNIGRKN  LVSLGTCIGK  FTHRGDFRLT  TQSLNLLAAN  AKNKVWLKPT  SEMSFLYGNH  120
121   VLKGGLGKIT  DSINQNDGVV  VFSMSDVPLG  FGTAARSTQD  CRKCDPNGIV  VHHYSDIGEY  180
181   LRDEDDL  187
Nucleotide CDS Sequence (FASTA)
1     ATGAGGCCTT  TGGACGAGAA  AGAGATGGGT  GAAGTTTTCA  AGAAACTGAT  GTTGTTCACA  60
61    GGAAACAACC  TCAAAAACAT  CATTGAAAGC  CCATCACATG  AAGGACCAGA  CCCGAACCCA  120
121   GGTCGGTACT  GCTTCAGGCT  CCACAAAAAC  AAGGTATTTT  ACATCAGTGA  ATCAATAGTG  180
181   AAGCGAGCAA  CAAACATTGG  CCGCAAAAAT  TTGGTATCTT  TAGGTACTTG  TATTGGGAAA  240
241   TTCACTCATA  GGGGTGATTT  TAGATTGACT  ACACAATCAC  TGAATTTATT  GGCTGCAAAT  300
301   GCTAAAAATA  AAGTTTGGTT  GAAGCCCACT  TCAGAGATGT  CTTTTTTGTA  TGGGAATCAT  360
361   GTGTTAAAAG  GCGGGTTAGG  GAAGATTACT  GATAGTATCA  ATCAAAATGA  TGGGGTTGTC  420
421   GTGTTTTCTA  TGAGTGATGT  GCCTTTGGGG  TTTGGAACCG  CCGCCAGGTC  GACACAGGAT  480
481   TGTAGGAAGT  GTGATCCTAA  TGGGATTGTT  GTGCATCACT  ACTCTGATAT  TGGTGAGTAT  540
541   TTGAGAGATG  AAGATGATCT  TTGA  564

▼ KEYWORD


ID
Family
Complete proteome
Nucleus
Reference proteome
Ribosome biogenesis
RNA-binding

▼ GENE ONTOLOGY


ID
Classification
Description
Cellular Component
Nucleolus
Cellular Component
Preribosome, large subunit precursor
Molecular Function
RNA binding
Biological Process
Ribosomal large subunit biogenesis
Biological Process
Ribosome assembly

▼ KEGG



▼ ORTHOLOGY


DrLLPS IDOrganismIdentityE-valueScore
LLPS-Mae-0349Manihot esculenta83.966e-116 334
LLPS-Brn-1866Brassica napus79.682e-107 313
LLPS-Viv-0618Vitis vinifera79.682e-108 315
LLPS-Brr-0502Brassica rapa79.682e-107 313
LLPS-Bro-0985Brassica oleracea79.145e-107 311
LLPS-Cus-0432Cucumis sativus78.613e-106 310
LLPS-Prp-0736Prunus persica78.611e-106 310
LLPS-Via-0872Vigna angularis77.546e-107 311
LLPS-Vir-1732Vigna radiata77.541e-107 313
LLPS-Arl-0347Arabidopsis lyrata77.548e-105 306
LLPS-Dac-1327Daucus carota77.541e-105 308
LLPS-Phv-0034Phaseolus vulgaris77.545e-107 311
LLPS-Met-0365Medicago truncatula77.018e-104 303
LLPS-Glm-0477Glycine max77.013e-106 310
LLPS-Art-0069Arabidopsis thaliana77.011e-103 303
LLPS-Hea-2004Helianthus annuus76.477e-104 304
LLPS-Thc-0533Theobroma cacao76.341e-104 306
LLPS-Coc-0479Corchorus capsularis76.347e-104 304
LLPS-Sol-0613Solanum lycopersicum74.877e-100 294
LLPS-Amt-0038Amborella trichopoda74.872e-102 300
LLPS-Gor-0469Gossypium raimondii74.737e-103 301
LLPS-Sot-1651Solanum tuberosum74.334e-100 294
LLPS-Nia-0552Nicotiana attenuata73.82e-99 292
LLPS-Anp-2182Anas platyrhynchos70.02e-1880.5
LLPS-Php-0268Physcomitrella patens64.717e-88 263
LLPS-Sei-0088Setaria italica62.576e-86 260
LLPS-Tra-0246Triticum aestivum62.575e-84 253
LLPS-Brd-0150Brachypodium distachyon62.572e-84 254
LLPS-Orp-0623Oryza punctata62.571e-83 252
LLPS-Hov-0760Hordeum vulgare62.034e-83 251
LLPS-Orb-0788Oryza barthii61.91e-63 200
LLPS-Lep-0746Leersia perrieri61.52e-83 252
LLPS-Ori-0816Oryza indica61.53e-82 249
LLPS-Sem-0172Selaginella moellendorffii61.52e-81 246
LLPS-Orni-0332Oryza nivara61.53e-82 249
LLPS-Orm-0484Oryza meridionalis61.53e-82 249
LLPS-Orr-0571Oryza rufipogon61.53e-82 249
LLPS-Org-0156Oryza glaberrima61.53e-82 249
LLPS-Ors-0379Oryza sativa61.53e-82 249
LLPS-Zem-0049Zea mays60.965e-83 251
LLPS-Tru-0160Triticum urartu60.761e-26 106
LLPS-Sob-0695Sorghum bicolor59.892e-82 249
LLPS-Orbr-0174Oryza brachyantha58.883e-38 140
LLPS-Mod-1972Monodelphis domestica58.296e-75 230
LLPS-Anc-0289Anolis carolinensis57.752e-75 231
LLPS-Lac-0186Latimeria chalumnae57.756e-73 224
LLPS-Pes-0367Pelodiscus sinensis57.499e-64 201
LLPS-Ova-2467Ovis aries56.682e-71 221
LLPS-Meg-1438Meleagris gallopavo56.293e-65 204
LLPS-Dio-1796Dipodomys ordii56.158e-71 219
LLPS-Scf-1224Scleropages formosus56.156e-72 222
LLPS-Bot-0035Bos taurus56.151e-70 219
LLPS-Aim-1822Ailuropoda melanoleuca56.157e-70 217
LLPS-Ran-1536Rattus norvegicus56.158e-71 219
LLPS-Aon-0118Aotus nancymaae56.159e-71 219
LLPS-Caj-0438Callithrix jacchus56.159e-71 219
LLPS-Caf-2024Canis familiaris56.152e-69 216
LLPS-Xet-2171Xenopus tropicalis56.153e-72 223
LLPS-Gaga-0576Gallus gallus56.151e-72 224
LLPS-Urm-0706Ursus maritimus56.157e-70 217
LLPS-Fec-1258Felis catus56.157e-70 217
LLPS-Fia-0184Ficedula albicollis55.695e-64 201
LLPS-Tut-0800Tursiops truncatus55.612e-70 218
LLPS-Myl-0984Myotis lucifugus55.612e-70 218
LLPS-Ere-0297Erinaceus europaeus55.611e-70 219
LLPS-Mea-0751Mesocricetus auratus55.612e-70 218
LLPS-Gog-0913Gorilla gorilla55.611e-70 219
LLPS-Ten-1808Tetraodon nigroviridis55.614e-72 223
LLPS-Poa-0050Pongo abelii55.611e-70 219
LLPS-Cap-1379Cavia porcellus55.613e-70 218
LLPS-Eqc-1993Equus caballus55.612e-70 218
LLPS-Ict-3673Ictidomys tridecemlineatus55.612e-70 218
LLPS-Cas-2151Carlito syrichta55.613e-70 218
LLPS-Hos-0738Homo sapiens55.611e-70 219
LLPS-Pap-1760Pan paniscus55.611e-70 219
LLPS-Pat-0442Pan troglodytes55.611e-70 219
LLPS-Otg-0146Otolemur garnettii55.611e-70 219
LLPS-Tar-1519Takifugu rubripes55.082e-71 221
LLPS-Mal-2069Mandrillus leucophaeus55.082e-70 218
LLPS-Paa-1506Papio anubis55.082e-70 218
LLPS-Sus-1387Sus scrofa55.087e-70 217
LLPS-Leo-1131Lepisosteus oculatus55.083e-69 215
LLPS-Cea-0038Cercocebus atys55.082e-70 218
LLPS-Mum-0949Mus musculus55.081e-69 216
LLPS-Maf-1895Macaca fascicularis55.082e-70 218
LLPS-Chs-0037Chlorocebus sabaeus55.083e-70 218
LLPS-Mel-0464Melampsora laricipopulina55.082e-68 213
LLPS-Nol-0925Nomascus leucogenys55.085e-70 217
LLPS-Man-2622Macaca nemestrina55.082e-70 218
LLPS-Dar-1496Danio rerio55.087e-71 219
LLPS-Orc-1093Oryctolagus cuniculus55.085e-70 217
LLPS-Xim-0948Xiphophorus maculatus54.552e-70 218
LLPS-Chr-0250Chlamydomonas reinhardtii54.557e-72 222
LLPS-Icp-1803Ictalurus punctatus54.551e-70 219
LLPS-Loa-2047Loxodonta africana54.551e-69 216
LLPS-Mua-1629Musa acuminata54.323e-52 171
LLPS-Orl-0988Oryzias latipes54.012e-69 216
LLPS-Fud-2607Fukomys damarensis54.013e-69 215
LLPS-Pof-1102Poecilia formosa54.019e-70 216
LLPS-Orn-1011Oreochromis niloticus54.014e-69 215
LLPS-Scm-1125Scophthalmus maximus53.485e-69 215
LLPS-Gaa-0113Gasterosteus aculeatus53.292e-60 192
LLPS-Osl-0715Ostreococcus lucimarinus52.972e-72 224
LLPS-Spr-0691Sporisorium reilianum52.947e-64 201
LLPS-Usm-0828Ustilago maydis52.943e-65 205
LLPS-Tag-0317Taeniopygia guttata52.943e-67 210
LLPS-Chc-0252Chondrus crispus52.158e-65 204
LLPS-Abg-1479Absidia glauca51.876e-64 202
LLPS-Cis-0629Ciona savignyi51.871e-68 214
LLPS-Cii-0391Ciona intestinalis51.871e-68 214
LLPS-Crn-0294Cryptococcus neoformans51.872e-64 203
LLPS-Asg-0229Ashbya gossypii51.343e-60 192
LLPS-Mam-0842Macaca mulatta51.342e-62 198
LLPS-Rhb-0348Rhinopithecus bieti50.283e-58 187
LLPS-Blg-1127Blumeria graminis50.276e-62 197
LLPS-Sac-0336Saccharomyces cerevisiae49.738e-60 191
LLPS-Yal-0537Yarrowia lipolytica49.733e-61 195
LLPS-Scc-0309Schizosaccharomyces cryophilus49.733e-62 197
LLPS-Miv-0249Microbotryum violaceum49.732e-63 200
LLPS-Scp-0415Schizosaccharomyces pombe49.23e-62 197
LLPS-Scj-0739Schizosaccharomyces japonicus49.25e-63 199
LLPS-Beb-0473Beauveria bassiana49.24e-58 187
LLPS-Fus-0002Fusarium solani49.29e-59 189
LLPS-Fuv-0556Fusarium verticillioides48.664e-59 189
LLPS-Mao-0002Magnaporthe oryzae48.665e-57 184
LLPS-Cae-0812Caenorhabditis elegans48.662e-59 190
LLPS-Fuo-0182Fusarium oxysporum48.664e-59 189
LLPS-Gas-0236Galdieria sulphuraria48.654e-57 184
LLPS-Aso-0127Aspergillus oryzae48.138e-55 179
LLPS-Kop-0139Komagataella pastoris48.136e-59 189
LLPS-Zyt-1010Zymoseptoria tritici47.593e-61 195
LLPS-Tum-0731Tuber melanosporum47.598e-60 191
LLPS-Gag-1123Gaeumannomyces graminis47.595e-57 184
LLPS-Coo-0325Colletotrichum orbiculare47.599e-59 189
LLPS-Asn-0595Aspergillus nidulans47.592e-55 180
LLPS-Trv-0523Trichoderma virens47.592e-57 185
LLPS-Cogr-0183Colletotrichum graminicola47.595e-59 189
LLPS-Asm-0092Astyanax mexicanus47.131e-48 166
LLPS-Lem-0367Leptosphaeria maculans47.064e-56 182
LLPS-Ora-0149Ornithorhynchus anatinus47.062e-2394.4
LLPS-Map-0095Magnaporthe poae47.062e-57 185
LLPS-Pytr-0257Pyrenophora triticirepentis47.068e-55 178
LLPS-Cog-0280Colletotrichum gloeosporioides47.067e-58 186
LLPS-Pyt-0287Pyrenophora teres46.525e-54 176
LLPS-Drm-0316Drosophila melanogaster46.523e-55 179
LLPS-Phn-0010Phaeosphaeria nodorum46.526e-55 179
LLPS-Ved-0018Verticillium dahliae46.527e-57 184
LLPS-Trr-0459Trichoderma reesei46.521e-56 183
LLPS-Dos-0268Dothistroma septosporum45.997e-59 189
LLPS-Nec-0519Neurospora crassa44.924e-51 169
LLPS-Cym-0102Cyanidioschyzon merolae44.396e-54 176
LLPS-Asfu-1145Aspergillus fumigatus43.179e-49 163
LLPS-Nef-0549Neosartorya fischeri43.179e-49 163
LLPS-Ast-0336Aspergillus terreus39.574e-45 154
LLPS-Asc-0126Aspergillus clavatus38.941e-45 156