LLPS-Pot-0068
POPTR_010G024400
Integrated Annotations
▼ OVERVIEW
Status: | Unreviewed |
Protein Name: | 60S ribosome subunit biogenesis protein NIP7 homolog |
Gene Name: | POPTR_010G024400 |
Ensembl Gene: | POPTR_010G024400v3 |
Ensembl Protein: | PNT14317 |
Organism: | Populus trichocarpa |
Taxa ID: | 3694 |
LLPS Type: | Others |
▼ Classification
Condensates:
Condensate | Evidence | Orthologs |
---|---|---|
Nucleolus, Stress granule | Predicted from orthologs | (View) |
▼ FUNCTION
Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly. |
▼ CROSS REFERENCE
Database | Nucleotide ID | Protein ID |
---|---|---|
Ensembl | PNT14317 | PNT14317 |
UniProt | B9HSB9, B9HSB9_POPTR | |
GeneBank | CM009299 | PNT14317.1 |
RefSeq | XM_002315522.2 | XP_002315558.1 |
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 MRPLDEKEMG EVFKKLMLFT GNNLKNIIES PSHEGPDPNP GRYCFRLHKN KVFYISESIV 60 61 KRATNIGRKN LVSLGTCIGK FTHRGDFRLT TQSLNLLAAN AKNKVWLKPT SEMSFLYGNH 120 121 VLKGGLGKIT DSINQNDGVV VFSMSDVPLG FGTAARSTQD CRKCDPNGIV VHHYSDIGEY 180 181 LRDEDDL 187 |
Nucleotide CDS Sequence (FASTA) |
1 ATGAGGCCTT TGGACGAGAA AGAGATGGGT GAAGTTTTCA AGAAACTGAT GTTGTTCACA 60 61 GGAAACAACC TCAAAAACAT CATTGAAAGC CCATCACATG AAGGACCAGA CCCGAACCCA 120 121 GGTCGGTACT GCTTCAGGCT CCACAAAAAC AAGGTATTTT ACATCAGTGA ATCAATAGTG 180 181 AAGCGAGCAA CAAACATTGG CCGCAAAAAT TTGGTATCTT TAGGTACTTG TATTGGGAAA 240 241 TTCACTCATA GGGGTGATTT TAGATTGACT ACACAATCAC TGAATTTATT GGCTGCAAAT 300 301 GCTAAAAATA AAGTTTGGTT GAAGCCCACT TCAGAGATGT CTTTTTTGTA TGGGAATCAT 360 361 GTGTTAAAAG GCGGGTTAGG GAAGATTACT GATAGTATCA ATCAAAATGA TGGGGTTGTC 420 421 GTGTTTTCTA TGAGTGATGT GCCTTTGGGG TTTGGAACCG CCGCCAGGTC GACACAGGAT 480 481 TGTAGGAAGT GTGATCCTAA TGGGATTGTT GTGCATCACT ACTCTGATAT TGGTGAGTAT 540 541 TTGAGAGATG AAGATGATCT TTGA 564 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Nucleolus | |
Cellular Component | Preribosome, large subunit precursor | |
Molecular Function | RNA binding | |
Biological Process | Ribosomal large subunit biogenesis | |
Biological Process | Ribosome assembly |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Mae-0349 | Manihot esculenta | 83.96 | 6e-116 | 334 |
LLPS-Brn-1866 | Brassica napus | 79.68 | 2e-107 | 313 |
LLPS-Viv-0618 | Vitis vinifera | 79.68 | 2e-108 | 315 |
LLPS-Brr-0502 | Brassica rapa | 79.68 | 2e-107 | 313 |
LLPS-Bro-0985 | Brassica oleracea | 79.14 | 5e-107 | 311 |
LLPS-Cus-0432 | Cucumis sativus | 78.61 | 3e-106 | 310 |
LLPS-Prp-0736 | Prunus persica | 78.61 | 1e-106 | 310 |
LLPS-Via-0872 | Vigna angularis | 77.54 | 6e-107 | 311 |
LLPS-Vir-1732 | Vigna radiata | 77.54 | 1e-107 | 313 |
LLPS-Arl-0347 | Arabidopsis lyrata | 77.54 | 8e-105 | 306 |
LLPS-Dac-1327 | Daucus carota | 77.54 | 1e-105 | 308 |
LLPS-Phv-0034 | Phaseolus vulgaris | 77.54 | 5e-107 | 311 |
LLPS-Met-0365 | Medicago truncatula | 77.01 | 8e-104 | 303 |
LLPS-Glm-0477 | Glycine max | 77.01 | 3e-106 | 310 |
LLPS-Art-0069 | Arabidopsis thaliana | 77.01 | 1e-103 | 303 |
LLPS-Hea-2004 | Helianthus annuus | 76.47 | 7e-104 | 304 |
LLPS-Thc-0533 | Theobroma cacao | 76.34 | 1e-104 | 306 |
LLPS-Coc-0479 | Corchorus capsularis | 76.34 | 7e-104 | 304 |
LLPS-Sol-0613 | Solanum lycopersicum | 74.87 | 7e-100 | 294 |
LLPS-Amt-0038 | Amborella trichopoda | 74.87 | 2e-102 | 300 |
LLPS-Gor-0469 | Gossypium raimondii | 74.73 | 7e-103 | 301 |
LLPS-Sot-1651 | Solanum tuberosum | 74.33 | 4e-100 | 294 |
LLPS-Nia-0552 | Nicotiana attenuata | 73.8 | 2e-99 | 292 |
LLPS-Anp-2182 | Anas platyrhynchos | 70.0 | 2e-18 | 80.5 |
LLPS-Php-0268 | Physcomitrella patens | 64.71 | 7e-88 | 263 |
LLPS-Sei-0088 | Setaria italica | 62.57 | 6e-86 | 260 |
LLPS-Tra-0246 | Triticum aestivum | 62.57 | 5e-84 | 253 |
LLPS-Brd-0150 | Brachypodium distachyon | 62.57 | 2e-84 | 254 |
LLPS-Orp-0623 | Oryza punctata | 62.57 | 1e-83 | 252 |
LLPS-Hov-0760 | Hordeum vulgare | 62.03 | 4e-83 | 251 |
LLPS-Orb-0788 | Oryza barthii | 61.9 | 1e-63 | 200 |
LLPS-Lep-0746 | Leersia perrieri | 61.5 | 2e-83 | 252 |
LLPS-Ori-0816 | Oryza indica | 61.5 | 3e-82 | 249 |
LLPS-Sem-0172 | Selaginella moellendorffii | 61.5 | 2e-81 | 246 |
LLPS-Orni-0332 | Oryza nivara | 61.5 | 3e-82 | 249 |
LLPS-Orm-0484 | Oryza meridionalis | 61.5 | 3e-82 | 249 |
LLPS-Orr-0571 | Oryza rufipogon | 61.5 | 3e-82 | 249 |
LLPS-Org-0156 | Oryza glaberrima | 61.5 | 3e-82 | 249 |
LLPS-Ors-0379 | Oryza sativa | 61.5 | 3e-82 | 249 |
LLPS-Zem-0049 | Zea mays | 60.96 | 5e-83 | 251 |
LLPS-Tru-0160 | Triticum urartu | 60.76 | 1e-26 | 106 |
LLPS-Sob-0695 | Sorghum bicolor | 59.89 | 2e-82 | 249 |
LLPS-Orbr-0174 | Oryza brachyantha | 58.88 | 3e-38 | 140 |
LLPS-Mod-1972 | Monodelphis domestica | 58.29 | 6e-75 | 230 |
LLPS-Anc-0289 | Anolis carolinensis | 57.75 | 2e-75 | 231 |
LLPS-Lac-0186 | Latimeria chalumnae | 57.75 | 6e-73 | 224 |
LLPS-Pes-0367 | Pelodiscus sinensis | 57.49 | 9e-64 | 201 |
LLPS-Ova-2467 | Ovis aries | 56.68 | 2e-71 | 221 |
LLPS-Meg-1438 | Meleagris gallopavo | 56.29 | 3e-65 | 204 |
LLPS-Dio-1796 | Dipodomys ordii | 56.15 | 8e-71 | 219 |
LLPS-Scf-1224 | Scleropages formosus | 56.15 | 6e-72 | 222 |
LLPS-Bot-0035 | Bos taurus | 56.15 | 1e-70 | 219 |
LLPS-Aim-1822 | Ailuropoda melanoleuca | 56.15 | 7e-70 | 217 |
LLPS-Ran-1536 | Rattus norvegicus | 56.15 | 8e-71 | 219 |
LLPS-Aon-0118 | Aotus nancymaae | 56.15 | 9e-71 | 219 |
LLPS-Caj-0438 | Callithrix jacchus | 56.15 | 9e-71 | 219 |
LLPS-Caf-2024 | Canis familiaris | 56.15 | 2e-69 | 216 |
LLPS-Xet-2171 | Xenopus tropicalis | 56.15 | 3e-72 | 223 |
LLPS-Gaga-0576 | Gallus gallus | 56.15 | 1e-72 | 224 |
LLPS-Urm-0706 | Ursus maritimus | 56.15 | 7e-70 | 217 |
LLPS-Fec-1258 | Felis catus | 56.15 | 7e-70 | 217 |
LLPS-Fia-0184 | Ficedula albicollis | 55.69 | 5e-64 | 201 |
LLPS-Tut-0800 | Tursiops truncatus | 55.61 | 2e-70 | 218 |
LLPS-Myl-0984 | Myotis lucifugus | 55.61 | 2e-70 | 218 |
LLPS-Ere-0297 | Erinaceus europaeus | 55.61 | 1e-70 | 219 |
LLPS-Mea-0751 | Mesocricetus auratus | 55.61 | 2e-70 | 218 |
LLPS-Gog-0913 | Gorilla gorilla | 55.61 | 1e-70 | 219 |
LLPS-Ten-1808 | Tetraodon nigroviridis | 55.61 | 4e-72 | 223 |
LLPS-Poa-0050 | Pongo abelii | 55.61 | 1e-70 | 219 |
LLPS-Cap-1379 | Cavia porcellus | 55.61 | 3e-70 | 218 |
LLPS-Eqc-1993 | Equus caballus | 55.61 | 2e-70 | 218 |
LLPS-Ict-3673 | Ictidomys tridecemlineatus | 55.61 | 2e-70 | 218 |
LLPS-Cas-2151 | Carlito syrichta | 55.61 | 3e-70 | 218 |
LLPS-Hos-0738 | Homo sapiens | 55.61 | 1e-70 | 219 |
LLPS-Pap-1760 | Pan paniscus | 55.61 | 1e-70 | 219 |
LLPS-Pat-0442 | Pan troglodytes | 55.61 | 1e-70 | 219 |
LLPS-Otg-0146 | Otolemur garnettii | 55.61 | 1e-70 | 219 |
LLPS-Tar-1519 | Takifugu rubripes | 55.08 | 2e-71 | 221 |
LLPS-Mal-2069 | Mandrillus leucophaeus | 55.08 | 2e-70 | 218 |
LLPS-Paa-1506 | Papio anubis | 55.08 | 2e-70 | 218 |
LLPS-Sus-1387 | Sus scrofa | 55.08 | 7e-70 | 217 |
LLPS-Leo-1131 | Lepisosteus oculatus | 55.08 | 3e-69 | 215 |
LLPS-Cea-0038 | Cercocebus atys | 55.08 | 2e-70 | 218 |
LLPS-Mum-0949 | Mus musculus | 55.08 | 1e-69 | 216 |
LLPS-Maf-1895 | Macaca fascicularis | 55.08 | 2e-70 | 218 |
LLPS-Chs-0037 | Chlorocebus sabaeus | 55.08 | 3e-70 | 218 |
LLPS-Mel-0464 | Melampsora laricipopulina | 55.08 | 2e-68 | 213 |
LLPS-Nol-0925 | Nomascus leucogenys | 55.08 | 5e-70 | 217 |
LLPS-Man-2622 | Macaca nemestrina | 55.08 | 2e-70 | 218 |
LLPS-Dar-1496 | Danio rerio | 55.08 | 7e-71 | 219 |
LLPS-Orc-1093 | Oryctolagus cuniculus | 55.08 | 5e-70 | 217 |
LLPS-Xim-0948 | Xiphophorus maculatus | 54.55 | 2e-70 | 218 |
LLPS-Chr-0250 | Chlamydomonas reinhardtii | 54.55 | 7e-72 | 222 |
LLPS-Icp-1803 | Ictalurus punctatus | 54.55 | 1e-70 | 219 |
LLPS-Loa-2047 | Loxodonta africana | 54.55 | 1e-69 | 216 |
LLPS-Mua-1629 | Musa acuminata | 54.32 | 3e-52 | 171 |
LLPS-Orl-0988 | Oryzias latipes | 54.01 | 2e-69 | 216 |
LLPS-Fud-2607 | Fukomys damarensis | 54.01 | 3e-69 | 215 |
LLPS-Pof-1102 | Poecilia formosa | 54.01 | 9e-70 | 216 |
LLPS-Orn-1011 | Oreochromis niloticus | 54.01 | 4e-69 | 215 |
LLPS-Scm-1125 | Scophthalmus maximus | 53.48 | 5e-69 | 215 |
LLPS-Gaa-0113 | Gasterosteus aculeatus | 53.29 | 2e-60 | 192 |
LLPS-Osl-0715 | Ostreococcus lucimarinus | 52.97 | 2e-72 | 224 |
LLPS-Spr-0691 | Sporisorium reilianum | 52.94 | 7e-64 | 201 |
LLPS-Usm-0828 | Ustilago maydis | 52.94 | 3e-65 | 205 |
LLPS-Tag-0317 | Taeniopygia guttata | 52.94 | 3e-67 | 210 |
LLPS-Chc-0252 | Chondrus crispus | 52.15 | 8e-65 | 204 |
LLPS-Abg-1479 | Absidia glauca | 51.87 | 6e-64 | 202 |
LLPS-Cis-0629 | Ciona savignyi | 51.87 | 1e-68 | 214 |
LLPS-Cii-0391 | Ciona intestinalis | 51.87 | 1e-68 | 214 |
LLPS-Crn-0294 | Cryptococcus neoformans | 51.87 | 2e-64 | 203 |
LLPS-Asg-0229 | Ashbya gossypii | 51.34 | 3e-60 | 192 |
LLPS-Mam-0842 | Macaca mulatta | 51.34 | 2e-62 | 198 |
LLPS-Rhb-0348 | Rhinopithecus bieti | 50.28 | 3e-58 | 187 |
LLPS-Blg-1127 | Blumeria graminis | 50.27 | 6e-62 | 197 |
LLPS-Sac-0336 | Saccharomyces cerevisiae | 49.73 | 8e-60 | 191 |
LLPS-Yal-0537 | Yarrowia lipolytica | 49.73 | 3e-61 | 195 |
LLPS-Scc-0309 | Schizosaccharomyces cryophilus | 49.73 | 3e-62 | 197 |
LLPS-Miv-0249 | Microbotryum violaceum | 49.73 | 2e-63 | 200 |
LLPS-Scp-0415 | Schizosaccharomyces pombe | 49.2 | 3e-62 | 197 |
LLPS-Scj-0739 | Schizosaccharomyces japonicus | 49.2 | 5e-63 | 199 |
LLPS-Beb-0473 | Beauveria bassiana | 49.2 | 4e-58 | 187 |
LLPS-Fus-0002 | Fusarium solani | 49.2 | 9e-59 | 189 |
LLPS-Fuv-0556 | Fusarium verticillioides | 48.66 | 4e-59 | 189 |
LLPS-Mao-0002 | Magnaporthe oryzae | 48.66 | 5e-57 | 184 |
LLPS-Cae-0812 | Caenorhabditis elegans | 48.66 | 2e-59 | 190 |
LLPS-Fuo-0182 | Fusarium oxysporum | 48.66 | 4e-59 | 189 |
LLPS-Gas-0236 | Galdieria sulphuraria | 48.65 | 4e-57 | 184 |
LLPS-Aso-0127 | Aspergillus oryzae | 48.13 | 8e-55 | 179 |
LLPS-Kop-0139 | Komagataella pastoris | 48.13 | 6e-59 | 189 |
LLPS-Zyt-1010 | Zymoseptoria tritici | 47.59 | 3e-61 | 195 |
LLPS-Tum-0731 | Tuber melanosporum | 47.59 | 8e-60 | 191 |
LLPS-Gag-1123 | Gaeumannomyces graminis | 47.59 | 5e-57 | 184 |
LLPS-Coo-0325 | Colletotrichum orbiculare | 47.59 | 9e-59 | 189 |
LLPS-Asn-0595 | Aspergillus nidulans | 47.59 | 2e-55 | 180 |
LLPS-Trv-0523 | Trichoderma virens | 47.59 | 2e-57 | 185 |
LLPS-Cogr-0183 | Colletotrichum graminicola | 47.59 | 5e-59 | 189 |
LLPS-Asm-0092 | Astyanax mexicanus | 47.13 | 1e-48 | 166 |
LLPS-Lem-0367 | Leptosphaeria maculans | 47.06 | 4e-56 | 182 |
LLPS-Ora-0149 | Ornithorhynchus anatinus | 47.06 | 2e-23 | 94.4 |
LLPS-Map-0095 | Magnaporthe poae | 47.06 | 2e-57 | 185 |
LLPS-Pytr-0257 | Pyrenophora triticirepentis | 47.06 | 8e-55 | 178 |
LLPS-Cog-0280 | Colletotrichum gloeosporioides | 47.06 | 7e-58 | 186 |
LLPS-Pyt-0287 | Pyrenophora teres | 46.52 | 5e-54 | 176 |
LLPS-Drm-0316 | Drosophila melanogaster | 46.52 | 3e-55 | 179 |
LLPS-Phn-0010 | Phaeosphaeria nodorum | 46.52 | 6e-55 | 179 |
LLPS-Ved-0018 | Verticillium dahliae | 46.52 | 7e-57 | 184 |
LLPS-Trr-0459 | Trichoderma reesei | 46.52 | 1e-56 | 183 |
LLPS-Dos-0268 | Dothistroma septosporum | 45.99 | 7e-59 | 189 |
LLPS-Nec-0519 | Neurospora crassa | 44.92 | 4e-51 | 169 |
LLPS-Cym-0102 | Cyanidioschyzon merolae | 44.39 | 6e-54 | 176 |
LLPS-Asfu-1145 | Aspergillus fumigatus | 43.17 | 9e-49 | 163 |
LLPS-Nef-0549 | Neosartorya fischeri | 43.17 | 9e-49 | 163 |
LLPS-Ast-0336 | Aspergillus terreus | 39.57 | 4e-45 | 154 |
LLPS-Asc-0126 | Aspergillus clavatus | 38.94 | 1e-45 | 156 |