• Disorder▼
  • Domain▼
  • PTM▼
  • Variation▼
  • Mutation▼
  • Interaction▼
  • Disease▼
  • Drug▼
  • Physicochemical▼
  • Function▼
  • Proteomics▼
  • Structure▼
  • Localization▼
  • Expression▼
  • Element▼
  • Methylation▼

LLPS-Hea-0906
HannXRQ_Chr17g0560221

Integrated Annotations

▼ OVERVIEW

Status: Unreviewed
Protein Name: RNA polymerase II transcription factor B subunit 2
Gene Name: HannXRQ_Chr17g0560221
Ensembl Gene: HannXRQ_Chr17g0560221
Ensembl Protein: OTF87297
Organism: Helianthus annuus
Taxa ID: 4232
LLPS Type: Others


▼ PROPERTY


——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:
CondensateEvidenceOrthologs
NucleolusPredicted from orthologs(View)

▼ FUNCTION

Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA.

▼ CROSS REFERENCE

DatabaseNucleotide IDProtein ID
EnsemblOTF87297OTF87297
UniProtA0A251RSM5, A0A251RSM5_HELAN
GeneBankCM007906OTF87297.1

▼ SEQUENCE

Protein Sequence (FASTA)
1     MPQVRIIAKN  FMDMVASLPA  MKLDKLYDNP  FICEAILRSL  PPLAKKYVLQ  MLYIDVAVTD  60
61    TLLQEWVLAD  GASKHKVAVD  RLIQLRVFTE  VVDRKKETTY  LLNQKFRMNL  REHIIRGGVP  120
121   PREPMAANIT  VRLPSLEDLD  NYAAQQWECF  LLHLINSAEA  EVTTKSISPS  MMKVFQRGLL  180
181   SQRDKEGPRL  TESGFQFLLM  DTNAQLWYII  REYISNSEDR  GVDSADLISF  LLELSFHVTG  240
241   EAYNVNTLDD  IQRTTVKDLA  DLGLIKLQQG  RKDSWFIPTK  LATNLSISLS  DASSRKQGYV  300
301   VVETNFRLYA  YSTSKLHCEI  LRLFARVEYQ  LPNLIVGSIT  KENLYKAFQN  GITADQIISF  360
361   LQQNAHPRVA  ERVPSVPENV  TDQIRLWESD  LNRVEMTPAH  FFDDFPSRDM  FEAACDFARE  420
421   FSSLLWEDSK  KMRLIVKSEI  YGHMKDHLSR  QK  452
Nucleotide CDS Sequence (FASTA)
1     ATGCCGCAAG  TGAGGATCAT  AGCGAAGAAT  TTCATGGATA  TGGTGGCTTC  ATTACCCGCC  60
61    ATGAAGCTTG  ACAAGTTATA  TGATAATCCC  TTCATCTGTG  AAGCCATTCT  AAGATCTTTG  120
121   CCACCATTGG  CGAAGAAGTA  TGTTCTCCAG  ATGCTGTATA  TAGATGTTGC  TGTGACAGAC  180
181   ACTTTGTTGC  AAGAGTGGGT  TCTTGCTGAT  GGTGCTTCAA  AGCATAAAGT  TGCTGTTGAT  240
241   AGATTAATTC  AGTTGAGAGT  CTTTACTGAA  GTTGTTGACA  GGAAAAAGGA  GACCACTTAC  300
301   TTGTTAAACC  AGAAGTTCCG  GATGAACCTC  CGGGAGCATA  TTATTCGCGG  TGGTGTACCG  360
361   CCACGAGAAC  CTATGGCTGC  AAATATAACC  GTACGGCTCC  CAAGCTTGGA  GGATCTAGAC  420
421   AACTATGCAG  CTCAACAATG  GGAGTGTTTC  TTGCTGCATC  TCATAAACTC  TGCGGAAGCT  480
481   GAGGTTACGA  CGAAAAGCAT  CAGCCCTTCA  ATGATGAAAG  TCTTCCAACG  AGGCCTTTTA  540
541   AGTCAAAGAG  ACAAAGAAGG  TCCGAGGCTT  ACTGAAAGTG  GTTTCCAGTT  TTTGCTAATG  600
601   GATACCAATG  CACAACTCTG  GTATATCATC  AGGGAGTATA  TCAGTAATTC  AGAGGATAGA  660
661   GGTGTGGATT  CAGCAGATCT  CATCTCATTT  CTGCTTGAAC  TTAGCTTTCA  TGTTACTGGC  720
721   GAGGCGTATA  ACGTGAACAC  TTTAGATGAT  ATACAAAGGA  CAACAGTTAA  AGACCTTGCA  780
781   GACTTGGGCC  TCATCAAACT  CCAGCAGGGG  AGGAAAGACA  GTTGGTTCAT  TCCAACTAAA  840
841   CTGGCTACAA  ACCTCTCTAT  AAGCCTGTCG  GATGCGTCAT  CAAGGAAACA  GGGATATGTT  900
901   GTGGTGGAAA  CAAACTTCAG  GCTATACGCC  TACTCCACCT  CTAAGCTACA  TTGTGAAATC  960
961   TTGAGGCTCT  TTGCCAGGGT  AGAATATCAA  CTTCCAAACC  TTATTGTAGG  ATCCATTACA  1020
1021  AAAGAGAACT  TATACAAAGC  CTTTCAAAAT  GGCATTACAG  CCGATCAGAT  AATTTCATTT  1080
1081  CTTCAGCAGA  ATGCTCATCC  TCGTGTTGCC  GAAAGAGTGC  CATCTGTACC  AGAAAACGTC  1140
1141  ACGGATCAGA  TTAGGCTATG  GGAATCGGAT  CTTAATAGGG  TCGAGATGAC  GCCAGCTCAT  1200
1201  TTCTTTGATG  ACTTCCCATC  AAGGGACATG  TTTGAAGCAG  CCTGCGATTT  CGCAAGAGAA  1260
1261  TTCAGCAGTT  TGCTATGGGA  AGACTCGAAA  AAGATGCGCC  TTATAGTGAA  ATCCGAAATC  1320
1321  TATGGGCACA  TGAAAGATCA  TCTCAGCCGT  CAAAAATAG  1359

▼ KEYWORD

ID
Family
Complete proteome
DNA damage
DNA repair
Nucleus
Reference proteome
Transcription
Transcription regulation

▼ GENE ONTOLOGY

ID
Classification
Description
Cellular Component
Transcription factor TFIIH core complex
Molecular Function
ATPase activator activity
Biological Process
Nucleotide-excision repair

▼ ORTHOLOGY

DrLLPS IDOrganismIdentityE-valueScore
LLPS-Nia-1774Nicotiana attenuata79.510.0 749
LLPS-Mae-2686Manihot esculenta78.980.0 759
LLPS-Prp-1501Prunus persica78.90.0 756
LLPS-Sol-2177Solanum lycopersicum78.810.0 766
LLPS-Cus-2378Cucumis sativus77.650.0 747
LLPS-Gor-1426Gossypium raimondii77.380.0 743
LLPS-Thc-2150Theobroma cacao77.380.0 742
LLPS-Pot-2738Populus trichocarpa77.210.0 748
LLPS-Dac-2009Daucus carota77.140.0 647
LLPS-Coc-1386Corchorus capsularis76.270.0 727
LLPS-Art-2895Arabidopsis thaliana75.390.0 735
LLPS-Bro-2621Brassica oleracea75.220.0 720
LLPS-Brr-2657Brassica rapa74.940.0 726
LLPS-Arl-1443Arabidopsis lyrata74.940.0 731
LLPS-Phv-0795Phaseolus vulgaris74.780.0 720
LLPS-Brn-1147Brassica napus74.720.0 724
LLPS-Sot-1427Solanum tuberosum74.321e-74 238
LLPS-Glm-2782Glycine max73.890.0 718
LLPS-Met-1198Medicago truncatula73.010.0 708
LLPS-Mua-2038Musa acuminata72.790.0 719
LLPS-Via-1240Vigna angularis72.570.0 701
LLPS-Orbr-1804Oryza brachyantha70.440.0 674
LLPS-Lep-1552Leersia perrieri70.220.0 664
LLPS-Orm-1215Oryza meridionalis69.330.0 667
LLPS-Amt-2221Amborella trichopoda69.150.0 674
LLPS-Orr-1160Oryza rufipogon69.110.0 667
LLPS-Ors-1114Oryza sativa69.110.0 667
LLPS-Orgl-2032Oryza glumaepatula69.110.0 667
LLPS-Org-0485Oryza glaberrima68.890.0 665
LLPS-Orp-2344Oryza punctata68.270.0 662
LLPS-Brd-1575Brachypodium distachyon67.920.0 651
LLPS-Ori-2367Oryza indica67.90.0 660
LLPS-Tra-0085Triticum aestivum67.70.0 646
LLPS-Sei-0821Setaria italica67.70.0 648
LLPS-Zem-1275Zea mays67.480.0 649
LLPS-Sob-1248Sorghum bicolor67.040.0 644
LLPS-Vir-2010Vigna radiata64.170.0 636
LLPS-Tru-1567Triticum urartu62.551e-97 304
LLPS-Orb-0481Oryza barthii62.550.0 612
LLPS-Viv-2062Vitis vinifera55.563e-77 246
LLPS-Orni-2025Oryza nivara55.530.0 558
LLPS-Php-1166Physcomitrella patens52.639e-176 508
LLPS-Sem-0134Selaginella moellendorffii50.221e-151 446
LLPS-Xet-2190Xenopus tropicalis37.742e-69 233
LLPS-Fud-2092Fukomys damarensis34.991e-76 251
LLPS-Anc-1426Anolis carolinensis34.574e-87 280
LLPS-Eqc-0258Equus caballus34.53e-85 275
LLPS-Otg-2830Otolemur garnettii34.54e-85 275
LLPS-Sus-0538Sus scrofa34.51e-85 276
LLPS-Ran-1158Rattus norvegicus34.443e-84 273
LLPS-Mum-4682Mus musculus34.449e-84 272
LLPS-Mam-2149Macaca mulatta34.283e-84 274
LLPS-Cap-0698Cavia porcellus34.281e-84 275
LLPS-Poa-0660Pongo abelii34.281e-84 274
LLPS-Ict-0023Ictidomys tridecemlineatus34.284e-85 275
LLPS-Nol-0069Nomascus leucogenys34.281e-84 274
LLPS-Cas-1341Carlito syrichta34.283e-84 273
LLPS-Man-3858Macaca nemestrina34.283e-84 274
LLPS-Fec-3835Felis catus34.282e-84 273
LLPS-Pat-3712Pan troglodytes34.281e-84 274
LLPS-Pap-4641Pan paniscus34.281e-84 274
LLPS-Hos-0151Homo sapiens34.281e-84 274
LLPS-Aim-3896Ailuropoda melanoleuca34.288e-85 275
LLPS-Paa-3317Papio anubis34.281e-84 274
LLPS-Mal-0595Mandrillus leucophaeus34.281e-84 274
LLPS-Cea-0797Cercocebus atys34.281e-84 274
LLPS-Aon-3414Aotus nancymaae34.286e-84 272
LLPS-Chs-4374Chlorocebus sabaeus34.281e-84 274
LLPS-Mea-0677Mesocricetus auratus34.284e-85 275
LLPS-Maf-1697Macaca fascicularis34.281e-84 274
LLPS-Caj-1107Callithrix jacchus34.281e-84 274
LLPS-Gog-0566Gorilla gorilla34.281e-84 274
LLPS-Mod-0004Monodelphis domestica34.224e-85 275
LLPS-Ova-3736Ovis aries34.22e-84 274
LLPS-Ten-0568Tetraodon nigroviridis34.148e-87 280
LLPS-Dar-1066Danio rerio34.121e-87 282
LLPS-Scf-3717Scleropages formosus34.121e-88 285
LLPS-Caf-4104Canis familiaris34.063e-84 273
LLPS-Loa-0759Loxodonta africana34.061e-84 274
LLPS-Urm-3201Ursus maritimus34.066e-84 272
LLPS-Rhb-4809Rhinopithecus bieti34.063e-84 273
LLPS-Gaa-0044Gasterosteus aculeatus34.062e-87 281
LLPS-Bot-3665Bos taurus33.922e-84 273
LLPS-Aso-1209Aspergillus oryzae33.699e-72 241
LLPS-Asf-0420Aspergillus flavus33.699e-72 241
LLPS-Orl-0277Oryzias latipes33.622e-88 284
LLPS-Scm-3768Scophthalmus maximus33.481e-85 276
LLPS-Tar-3140Takifugu rubripes33.488e-84 272
LLPS-Cym-0779Cyanidioschyzon merolae33.339e-2096.3
LLPS-Xim-3239Xiphophorus maculatus33.128e-85 275
LLPS-Scc-1606Schizosaccharomyces cryophilus33.116e-71 238
LLPS-Scj-1262Schizosaccharomyces japonicus33.031e-72 242
LLPS-Chc-1180Chondrus crispus32.895e-68 231
LLPS-Cis-1527Ciona savignyi32.852e-73 244
LLPS-Orn-1939Oreochromis niloticus32.836e-84 272
LLPS-Tum-0728Tuber melanosporum32.651e-64 221
LLPS-Icp-1458Ictalurus punctatus32.621e-83 272
LLPS-Asm-3251Astyanax mexicanus32.624e-83 270
LLPS-Cii-2048Ciona intestinalis32.612e-38 144
LLPS-Asni-0674Aspergillus niger32.542e-67 229
LLPS-Phn-0858Phaeosphaeria nodorum32.432e-62 214
LLPS-Osl-1139Ostreococcus lucimarinus32.424e-72 242
LLPS-Asc-1659Aspergillus clavatus32.399e-72 241
LLPS-Scp-0817Schizosaccharomyces pombe32.31e-73 245
LLPS-Pyt-1428Pyrenophora teres32.216e-70 236
LLPS-Mao-1079Magnaporthe oryzae32.211e-64 222
LLPS-Lem-1134Leptosphaeria maculans32.063e-67 229
LLPS-Pytr-1549Pyrenophora triticirepentis31.985e-69 233
LLPS-Blg-0440Blumeria graminis31.925e-70 236
LLPS-Ast-1351Aspergillus terreus31.891e-66 227
LLPS-Drm-1711Drosophila melanogaster31.821e-76 254
LLPS-Asn-1168Aspergillus nidulans31.652e-69 235
LLPS-Pof-2563Poecilia formosa31.633e-74 247
LLPS-Usm-0767Ustilago maydis31.471e-71 241
LLPS-Spr-0706Sporisorium reilianum31.418e-73 244
LLPS-Asfu-1004Aspergillus fumigatus31.373e-67 229
LLPS-Nef-1040Neosartorya fischeri31.378e-67 227
LLPS-Scs-0937Sclerotinia sclerotiorum31.355e-64 219
LLPS-Trr-0271Trichoderma reesei31.191e-52 190
LLPS-Abg-1684Absidia glauca30.95e-78 257
LLPS-Zyt-1111Zymoseptoria tritici30.756e-54 193
LLPS-Dos-1570Dothistroma septosporum30.666e-60 210
LLPS-Lac-2693Latimeria chalumnae30.451e-66 226
LLPS-Cogr-0549Colletotrichum graminicola30.332e-47 176
LLPS-Trv-1538Trichoderma virens30.273e-53 191
LLPS-Fus-0786Fusarium solani30.231e-56 201
LLPS-Miv-0894Microbotryum violaceum30.192e-64 222
LLPS-Gas-1269Galdieria sulphuraria29.983e-47 177
LLPS-Mel-0933Melampsora laricipopulina29.766e-63 217
LLPS-Fuv-1483Fusarium verticillioides29.621e-55 198
LLPS-Ved-1552Verticillium dahliae29.572e-52 189
LLPS-Beb-0889Beauveria bassiana29.562e-54 195
LLPS-Asg-0652Ashbya gossypii29.276e-59 207
LLPS-Yal-0890Yarrowia lipolytica29.22e-65 224
LLPS-Coo-1604Colletotrichum orbiculare29.162e-50 184
LLPS-Nec-1228Neurospora crassa29.111e-55 198
LLPS-Cae-0512Caenorhabditis elegans29.061e-52 190
LLPS-Fuo-0771Fusarium oxysporum29.054e-56 199
LLPS-Pug-0881Puccinia graminis29.033e-64 228
LLPS-Kop-0508Komagataella pastoris28.843e-57 204
LLPS-Dio-4049Dipodomys ordii28.761e-1167.4
LLPS-Sac-1004Saccharomyces cerevisiae28.343e-59 208
LLPS-Put-0578Puccinia triticina28.121e-32 132
LLPS-Map-1365Magnaporthe poae27.676e-53 191
LLPS-Gag-0439Gaeumannomyces graminis27.557e-54 193
LLPS-Chr-1438Chlamydomonas reinhardtii27.143e-60 212
LLPS-Crn-1327Cryptococcus neoformans26.611e-37 147
LLPS-Pes-1235Pelodiscus sinensis25.655e-36 142