LLPS-Arl-2007
ARALYDRAFT_314752
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | E3 ubiquitin protein ligase |
| Gene Name: | ARALYDRAFT_314752 |
| Ensembl Gene: | fgenesh1_pm.C_scaffold_1003532 |
| Ensembl Protein: | fgenesh1_pm.C_scaffold_1003532 |
| Organism: | Arabidopsis lyrata |
| Taxa ID: | 81972 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nucleolus | Predicted from orthologs | (View) |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | fgenesh1_pm.C_scaffold_1003532 | fgenesh1_pm.C_scaffold_1003532 |
| UniProt | D7KM78, D7KM78_ARALL | |
| GeneBank | GL348713 | EFH68084.1 |
| RefSeq | XM_002891779.1 | XP_002891825.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MENQESDEPM QKKPHLLDSV SPTSMARNSS PSHPIAKSVD ATVLQLQNQK LVQQLDLQKK 60 61 HLYDVETKIQ ELQIKQTSYD DELISVNQLW NQLVDDLILL GVRAGANQEA LKYLDIADKQ 120 121 RVPPCAADEM FLCRLLQVDS LDTSNSDEVV GKVEEALALR HSSTMELMGL FENTIATQRA 180 181 KAESISQNLH AVKSAEDATI QLSSINDLMK EEAKNLREMI DTLHVRHKEH TEQIHAYISS 240 241 HSTDQSELKH LKGQLEEIKA ELEENRRKLI TLKMQKDAAC EGHVTSPAIA NGSLSPEKPI 300 301 DKTKLRELKD SIDEIKIMAE GRLSELQAAQ EYNLSLSRQC QDIENELTDD QHIYSSRLYS 360 361 LINDRIHHWN AELDRYKILT EAIQAERSFV MRREKELNLR AESLEAANHK STTVGSRIEV 420 421 LEKKLQSCIV EKNGLELETE EAIQDSERQD IKSEFIAMAS TLSKEMEMME AQLKRWKDTA 480 481 HDALYLREQA QSLRVSLSNK ADEQKGLEDK CAKQMAEIKS LKALIEKLLK EKLELQNLAS 540 541 ICTRECNDER GLAEIKESQR KAQAQAEELK NVLDEHFLEL RVKAAHETET ACQERLATAK 600 601 AEIAELRTQL DLSEREVLEL KEGIKVKEEE AEASIAEMET IGQAYEDMQT QNQHLLQQVA 660 661 ERDDYNIKLV SESVKTKHAY NTHLSEKQVM EKQLQQVNAS VENFKARIAH SEEQMRGCFS 720 721 EAYKLIQEDR HLAISLETTK WEVADADKEF RWLKSAVSSS EKEYEQISRR TNDIKLELDD 780 781 ERREKKKLEE ELMELNKELG ELGSESVEAA IVRLQEEVKN CKNILKCGVC FDRPKEVVIV 840 841 KCYHLFCQQC IQRSLEIRHR KCPGCGTAFG QNDVRLVKM 879 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGAGAATC AGGAATCGGA CGAGCCGATG CAGAAGAAGC CTCATCTTTT AGACTCCGTT 60 61 TCTCCGACTT CCATGGCCCG TAATTCTTCA CCTTCTCACC CTATTGCTAA AAGTGTTGAT 120 121 GCCACTGTTC TACAGTTACA GAATCAGAAA CTGGTTCAGC AGTTAGACCT TCAGAAGAAA 180 181 CACCTGTACG ATGTTGAAAC CAAGATCCAA GAATTGCAAA TCAAACAAAC GTCTTATGAT 240 241 GATGAACTTA TCTCAGTTAA CCAGCTTTGG AATCAGTTGG TAGATGATCT GATATTGCTT 300 301 GGAGTTCGTG CTGGGGCTAA TCAAGAGGCT CTAAAATACT TGGACATTGC AGATAAACAG 360 361 CGAGTTCCAC CATGCGCTGC TGATGAAATG TTTCTGTGTA GACTTCTGCA AGTTGATTCC 420 421 TTAGATACTA GTAATAGTGA TGAGGTAGTA GGAAAGGTTG AAGAAGCTCT TGCTTTGCGT 480 481 CATTCCTCTA CAATGGAATT GATGGGACTC TTTGAGAACA CCATTGCTAC ACAGAGGGCG 540 541 AAAGCTGAAA GTATTTCTCA AAATTTACAT GCTGTGAAAT CGGCAGAAGA TGCCACCATC 600 601 CAGTTATCTA GCATTAATGA TTTGATGAAA GAGGAGGCCA AAAACTTGCG TGAGATGATT 660 661 GATACTTTAC ATGTGAGGCA CAAAGAACAC ACCGAGCAGA TTCATGCATA CATAAGCAGC 720 721 CATTCGACAG ATCAATCCGA GCTTAAACAC CTCAAAGGTC AATTGGAAGA GATCAAGGCT 780 781 GAGCTTGAAG AAAATAGAAG AAAATTGATA ACTCTGAAAA TGCAGAAGGA TGCTGCATGT 840 841 GAAGGTCATG TAACATCACC AGCAATAGCA AATGGAAGCC TTTCTCCTGA GAAGCCTATA 900 901 GATAAAACGA AGTTGCGTGA ATTGAAGGAC TCCATTGATG AAATAAAGAT AATGGCAGAA 960 961 GGTCGTCTGT CTGAGCTTCA AGCTGCACAA GAGTATAATC TTTCCTTGTC AAGACAATGT 1020 1021 CAAGATATTG AGAATGAACT AACGGATGAC CAGCATATAT ACTCGTCTAG ACTGTATAGT 1080 1081 TTGATCAATG ATCGAATTCA TCACTGGAAT GCTGAACTGG ACCGGTACAA AATTCTGACT 1140 1141 GAGGCCATTC AGGCTGAAAG GTCCTTTGTA ATGAGACGGG AGAAGGAACT AAATCTAAGG 1200 1201 GCAGAATCCC TAGAGGCAGC CAACCATAAG TCTACCACTG TTGGTTCTAG AATTGAAGTT 1260 1261 CTGGAAAAGA AGCTGCAGAG TTGTATAGTT GAAAAGAATG GATTAGAGCT TGAAACGGAA 1320 1321 GAAGCTATTC AAGATTCTGA ACGGCAAGAT ATTAAAAGTG AGTTTATTGC AATGGCATCA 1380 1381 ACCTTATCTA AAGAGATGGA AATGATGGAA GCACAGTTGA AACGGTGGAA GGACACTGCA 1440 1441 CATGATGCTC TTTACCTGCG TGAACAAGCT CAATCGCTGA GAGTTTCGTT AAGTAACAAG 1500 1501 GCAGACGAAC AGAAGGGTTT AGAGGATAAA TGTGCTAAAC AGATGGCGGA AATTAAATCT 1560 1561 CTCAAGGCTC TAATTGAGAA ACTTCTGAAA GAAAAATTAG AGCTGCAAAA TCTAGCAAGC 1620 1621 ATCTGTACGC GTGAGTGTAA TGATGAAAGA GGACTGGCAG AAATCAAGGA ATCACAACGG 1680 1681 AAAGCCCAAG CTCAGGCTGA AGAGCTGAAA AACGTTTTGG ATGAACACTT TCTTGAATTG 1740 1741 AGAGTGAAAG CGGCTCATGA GACTGAAACT GCTTGCCAAG AAAGGCTTGC AACCGCGAAG 1800 1801 GCTGAAATTG CTGAATTGAG GACTCAGTTA GATCTTTCTG AGAGGGAGGT TTTGGAACTT 1860 1861 AAGGAGGGTA TTAAAGTTAA AGAGGAGGAG GCAGAGGCAT CCATTGCTGA AATGGAGACT 1920 1921 ATTGGTCAAG CCTATGAAGA CATGCAGACA CAGAACCAAC ATTTGTTGCA GCAGGTGGCT 1980 1981 GAGCGGGACG ATTATAATAT CAAGCTTGTT TCCGAGAGTG TCAAGACAAA GCATGCTTAC 2040 2041 AACACTCACT TATCTGAGAA GCAAGTTATG GAAAAGCAGC TACAACAGGT TAATGCATCC 2100 2101 GTAGAGAATT TTAAAGCAAG GATTGCACAT AGTGAGGAAC AGATGAGAGG CTGTTTTTCT 2160 2161 GAGGCTTATA AATTGATTCA AGAAGATCGT CACCTCGCTA TCAGCCTCGA AACCACCAAG 2220 2221 TGGGAAGTAG CTGATGCTGA CAAGGAATTC AGATGGCTCA AGTCTGCTGT TTCTTCATCC 2280 2281 GAAAAGGAAT ATGAACAGAT CAGTAGGAGG ACAAACGACA TCAAACTGGA ATTGGATGAT 2340 2341 GAAAGGAGGG AGAAGAAGAA GCTTGAGGAA GAGCTGATGG AGTTGAACAA GGAGCTTGGA 2400 2401 GAGTTGGGTT CTGAGAGTGT AGAAGCTGCC ATAGTGAGAC TCCAGGAAGA AGTTAAGAAT 2460 2461 TGCAAAAACA TCCTCAAATG TGGCGTTTGT TTTGATCGGC CTAAAGAGGT GGTAATTGTG 2520 2521 AAATGTTATC ATCTCTTCTG CCAGCAATGC ATCCAACGTA GCTTAGAGAT CCGACACCGG 2580 2581 AAATGTCCAG GCTGCGGTAC CGCCTTTGGT CAGAACGACG TCCGACTTGT CAAAATGTAA 2640 |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Art-2690 | Arabidopsis thaliana | 93.33 | 0.0 | 1530 |
| LLPS-Viv-2131 | Vitis vinifera | 64.33 | 0.0 | 972 |
| LLPS-Thc-0824 | Theobroma cacao | 62.81 | 0.0 | 961 |
| LLPS-Coc-2126 | Corchorus capsularis | 62.76 | 0.0 | 965 |
| LLPS-Gor-1343 | Gossypium raimondii | 62.24 | 0.0 | 974 |
| LLPS-Prp-1109 | Prunus persica | 60.54 | 0.0 | 929 |
| LLPS-Amt-2127 | Amborella trichopoda | 59.91 | 2e-61 | 213 |
| LLPS-Dac-1596 | Daucus carota | 58.5 | 0.0 | 884 |
| LLPS-Hea-1284 | Helianthus annuus | 58.16 | 0.0 | 877 |
| LLPS-Nia-0536 | Nicotiana attenuata | 57.74 | 0.0 | 861 |
| LLPS-Via-0919 | Vigna angularis | 57.58 | 0.0 | 808 |
| LLPS-Phv-2408 | Phaseolus vulgaris | 57.24 | 0.0 | 803 |
| LLPS-Cus-1706 | Cucumis sativus | 56.58 | 0.0 | 852 |
| LLPS-Met-2277 | Medicago truncatula | 55.22 | 3e-18 | 94.4 |
| LLPS-Miv-1272 | Microbotryum violaceum | 53.7 | 2e-12 | 75.5 |
| LLPS-Pug-0737 | Puccinia graminis | 53.7 | 7e-12 | 73.6 |
| LLPS-Brd-0820 | Brachypodium distachyon | 52.55 | 0.0 | 559 |
| LLPS-Tra-2789 | Triticum aestivum | 50.86 | 0.0 | 716 |
| LLPS-Ors-0309 | Oryza sativa | 50.0 | 0.0 | 702 |
| LLPS-Cii-0300 | Ciona intestinalis | 50.0 | 5e-07 | 55.1 |
| LLPS-Ori-0225 | Oryza indica | 50.0 | 0.0 | 702 |
| LLPS-Chr-1151 | Chlamydomonas reinhardtii | 50.0 | 1e-14 | 82.8 |
| LLPS-Org-0196 | Oryza glaberrima | 49.88 | 0.0 | 700 |
| LLPS-Orgl-0930 | Oryza glumaepatula | 49.88 | 0.0 | 701 |
| LLPS-Orbr-0500 | Oryza brachyantha | 49.51 | 0.0 | 680 |
| LLPS-Lep-0958 | Leersia perrieri | 49.51 | 0.0 | 673 |
| LLPS-Tru-1939 | Triticum urartu | 49.26 | 0.0 | 676 |
| LLPS-Sob-0639 | Sorghum bicolor | 49.09 | 0.0 | 698 |
| LLPS-Crn-0545 | Cryptococcus neoformans | 49.02 | 9e-11 | 70.1 |
| LLPS-Mel-1429 | Melampsora laricipopulina | 48.15 | 2e-10 | 68.9 |
| LLPS-Sei-0887 | Setaria italica | 47.92 | 0.0 | 667 |
| LLPS-Orm-1332 | Oryza meridionalis | 47.62 | 0.0 | 678 |
| LLPS-Orb-1201 | Oryza barthii | 47.62 | 0.0 | 681 |
| LLPS-Otg-1484 | Otolemur garnettii | 47.54 | 5e-12 | 74.3 |
| LLPS-Rhb-1148 | Rhinopithecus bieti | 47.54 | 4e-12 | 74.3 |
| LLPS-Orn-2735 | Oreochromis niloticus | 47.54 | 8e-13 | 76.6 |
| LLPS-Scm-0403 | Scophthalmus maximus | 47.54 | 9e-13 | 76.6 |
| LLPS-Pap-1352 | Pan paniscus | 47.54 | 4e-12 | 74.7 |
| LLPS-Pat-1147 | Pan troglodytes | 47.54 | 4e-12 | 74.7 |
| LLPS-Man-3407 | Macaca nemestrina | 47.54 | 4e-12 | 74.3 |
| LLPS-Ten-3424 | Tetraodon nigroviridis | 47.54 | 1e-12 | 76.3 |
| LLPS-Poa-2222 | Pongo abelii | 47.54 | 4e-12 | 74.7 |
| LLPS-Mam-1600 | Macaca mulatta | 47.54 | 4e-12 | 74.3 |
| LLPS-Caj-2240 | Callithrix jacchus | 47.54 | 4e-12 | 74.7 |
| LLPS-Chs-1025 | Chlorocebus sabaeus | 47.54 | 4e-12 | 74.3 |
| LLPS-Maf-0870 | Macaca fascicularis | 47.54 | 4e-12 | 74.3 |
| LLPS-Leo-2551 | Lepisosteus oculatus | 47.54 | 1e-12 | 73.9 |
| LLPS-Orl-0438 | Oryzias latipes | 47.54 | 9e-13 | 76.6 |
| LLPS-Paa-1862 | Papio anubis | 47.54 | 4e-12 | 74.7 |
| LLPS-Mal-1230 | Mandrillus leucophaeus | 47.54 | 4e-12 | 74.7 |
| LLPS-Tar-2245 | Takifugu rubripes | 47.54 | 1e-12 | 76.3 |
| LLPS-Xim-1015 | Xiphophorus maculatus | 47.54 | 9e-13 | 76.6 |
| LLPS-Gaa-1578 | Gasterosteus aculeatus | 47.54 | 2e-12 | 75.9 |
| LLPS-Orni-2174 | Oryza nivara | 47.5 | 0.0 | 679 |
| LLPS-Orr-0675 | Oryza rufipogon | 47.38 | 0.0 | 672 |
| LLPS-Orc-2153 | Oryctolagus cuniculus | 46.88 | 3e-12 | 75.1 |
| LLPS-Fec-3050 | Felis catus | 46.88 | 3e-12 | 75.1 |
| LLPS-Mod-2018 | Monodelphis domestica | 46.88 | 2e-12 | 75.5 |
| LLPS-Loa-2046 | Loxodonta africana | 46.88 | 2e-12 | 75.5 |
| LLPS-Ict-0523 | Ictidomys tridecemlineatus | 46.88 | 3e-12 | 75.1 |
| LLPS-Eqc-0582 | Equus caballus | 46.88 | 3e-12 | 75.1 |
| LLPS-Caf-1654 | Canis familiaris | 46.88 | 3e-12 | 75.1 |
| LLPS-Sah-1844 | Sarcophilus harrisii | 46.88 | 3e-12 | 75.1 |
| LLPS-Sus-0007 | Sus scrofa | 46.88 | 2e-12 | 75.1 |
| LLPS-Ran-2707 | Rattus norvegicus | 46.88 | 3e-12 | 74.7 |
| LLPS-Ova-1719 | Ovis aries | 46.88 | 2e-12 | 75.5 |
| LLPS-Myl-0400 | Myotis lucifugus | 46.88 | 2e-12 | 75.5 |
| LLPS-Mup-2984 | Mustela putorius furo | 46.88 | 3e-12 | 75.1 |
| LLPS-Aim-3289 | Ailuropoda melanoleuca | 46.88 | 2e-12 | 75.1 |
| LLPS-Tut-0582 | Tursiops truncatus | 46.88 | 2e-12 | 75.5 |
| LLPS-Bot-3882 | Bos taurus | 46.88 | 2e-12 | 75.5 |
| LLPS-Vir-2071 | Vigna radiata | 46.83 | 0.0 | 592 |
| LLPS-Pes-2491 | Pelodiscus sinensis | 45.9 | 4e-12 | 74.3 |
| LLPS-Fia-1761 | Ficedula albicollis | 45.9 | 4e-12 | 74.3 |
| LLPS-Urm-2353 | Ursus maritimus | 45.9 | 4e-12 | 74.3 |
| LLPS-Meg-1119 | Meleagris gallopavo | 45.9 | 1e-11 | 73.2 |
| LLPS-Hos-3155 | Homo sapiens | 45.9 | 5e-12 | 74.3 |
| LLPS-Anp-3271 | Anas platyrhynchos | 45.9 | 4e-12 | 74.3 |
| LLPS-Cas-1548 | Carlito syrichta | 45.9 | 4e-12 | 74.7 |
| LLPS-Gaga-2752 | Gallus gallus | 45.9 | 6e-12 | 73.9 |
| LLPS-Tag-2933 | Taeniopygia guttata | 45.9 | 4e-12 | 74.3 |
| LLPS-Nol-1086 | Nomascus leucogenys | 45.9 | 4e-12 | 74.3 |
| LLPS-Anc-1806 | Anolis carolinensis | 45.9 | 5e-12 | 74.3 |
| LLPS-Gog-2613 | Gorilla gorilla | 45.9 | 4e-12 | 74.3 |
| LLPS-Cae-1645 | Caenorhabditis elegans | 45.9 | 2e-12 | 75.5 |
| LLPS-Fud-2536 | Fukomys damarensis | 45.9 | 5e-12 | 74.3 |
| LLPS-Ora-1955 | Ornithorhynchus anatinus | 45.9 | 4e-12 | 74.3 |
| LLPS-Mea-3876 | Mesocricetus auratus | 45.9 | 5e-12 | 74.3 |
| LLPS-Mum-1641 | Mus musculus | 45.9 | 5e-12 | 74.3 |
| LLPS-Cea-0535 | Cercocebus atys | 45.9 | 5e-12 | 74.3 |
| LLPS-Aon-0604 | Aotus nancymaae | 45.9 | 5e-12 | 74.3 |
| LLPS-Dio-1384 | Dipodomys ordii | 45.9 | 4e-12 | 74.3 |
| LLPS-Lem-0664 | Leptosphaeria maculans | 45.1 | 2e-09 | 65.9 |
| LLPS-Chc-1017 | Chondrus crispus | 45.0 | 1e-12 | 75.9 |
| LLPS-Phn-0634 | Phaeosphaeria nodorum | 44.44 | 3e-11 | 71.2 |
| LLPS-Pytr-1485 | Pyrenophora triticirepentis | 44.44 | 4e-11 | 71.2 |
| LLPS-Xet-1943 | Xenopus tropicalis | 44.26 | 2e-11 | 72.0 |
| LLPS-Usm-0649 | Ustilago maydis | 43.14 | 2e-09 | 65.9 |
| LLPS-Gas-1343 | Galdieria sulphuraria | 41.67 | 8e-09 | 63.5 |
| LLPS-Sem-1414 | Selaginella moellendorffii | 41.44 | 1e-148 | 468 |
| LLPS-Spr-1179 | Sporisorium reilianum | 41.38 | 5e-10 | 67.8 |
| LLPS-Cis-0171 | Ciona savignyi | 40.85 | 3e-11 | 71.6 |
| LLPS-Cym-0038 | Cyanidioschyzon merolae | 40.32 | 1e-11 | 72.4 |
| LLPS-Mua-1104 | Musa acuminata | 39.52 | 3e-57 | 206 |
| LLPS-Asg-1357 | Ashbya gossypii | 37.88 | 4e-09 | 64.7 |
| LLPS-Sac-1021 | Saccharomyces cerevisiae | 37.88 | 1e-08 | 62.8 |
| LLPS-Yal-1325 | Yarrowia lipolytica | 37.5 | 1e-08 | 62.8 |
| LLPS-Abg-1598 | Absidia glauca | 37.31 | 1e-09 | 66.6 |
| LLPS-Php-2421 | Physcomitrella patens | 36.65 | 2e-129 | 417 |
| LLPS-Mae-2043 | Manihot esculenta | 35.77 | 8e-124 | 402 |
| LLPS-Pot-1369 | Populus trichocarpa | 35.37 | 7e-125 | 405 |
| LLPS-Sol-1259 | Solanum lycopersicum | 33.82 | 3e-103 | 346 |
| LLPS-Glm-0741 | Glycine max | 32.57 | 2e-104 | 350 |
| LLPS-Dar-0323 | Danio rerio | 31.91 | 4e-20 | 100 |
| LLPS-Scf-0723 | Scleropages formosus | 31.91 | 2e-20 | 101 |
| LLPS-Brr-0467 | Brassica rapa | 31.7 | 1e-79 | 282 |
| LLPS-Hov-0832 | Hordeum vulgare | 31.68 | 2e-76 | 273 |
| LLPS-Lac-2713 | Latimeria chalumnae | 31.62 | 1e-18 | 95.5 |
| LLPS-Cap-3961 | Cavia porcellus | 30.56 | 1e-18 | 95.9 |
| LLPS-Brn-0440 | Brassica napus | 30.35 | 6e-81 | 286 |
| LLPS-Pof-0427 | Poecilia formosa | 30.24 | 7e-19 | 96.7 |
| LLPS-Orp-0350 | Oryza punctata | 29.98 | 2e-50 | 194 |
| LLPS-Bro-2701 | Brassica oleracea | 29.97 | 3e-80 | 284 |
| LLPS-Zem-2344 | Zea mays | 29.93 | 2e-76 | 273 |
| LLPS-Drm-1769 | Drosophila melanogaster | 29.54 | 9e-19 | 96.3 |
| LLPS-Icp-3997 | Ictalurus punctatus | 29.34 | 2e-19 | 98.2 |
| LLPS-Asm-0593 | Astyanax mexicanus | 28.93 | 7e-19 | 96.7 |