Yarrowia lipolytica      Regulator


※ Regulator introduction

    The LLPS of scaffold proteins and the stability of MLOs can be modulated by PTMs and other proteins (1-4). For example, arginine methylation of FUS by PRMT1 or PRMT8 reduces the LLPS of FUS, and both PRMTs were classified as PTM regulators. Also, Buchan et al. conducted a microscopy-based genetic screen of >4000 gene deletions in Saccharomyces cerevisiae, and identified 125 genes to be involved in regulating the stability and formation of P-bodies and/or stress granules (5). None of these proteins have been characterized to undergo LLPS, and here we classified all the 125 proteins as MLO regulators.

References
1. Vernon, R.M. and Forman-Kay, J.D. (2019) First-generation predictors of biological protein phase separation. Current opinion in structural biology 58, 88-96. PMID: 31252218
2. Wang, Z. and Zhang, H. (2019) Phase Separation, Transition, and Autophagic Degradation of Proteins in Development and Pathogenesis. Trends in cell biology, 29, 417-427. PMID: 30826216
3. Alberti, S., Gladfelter, A. and Mittag, T. (2019) Considerations and challenges in studying liquid-liquid phase separation and biomolecular condensates. Cell, 176, 419-434. PMID: 30682370
4. Bergeron-Sandoval, L.P., Safaee, N. and Michnick, S.W. (2016) Mechanisms and Consequences of Macromolecular Phase Separation. Cell, 165, 1067-1079. PMID: 27203111
5. Buchan, J.R., Kolaitis, R.M., Taylor, J.P. and Parker, R. (2013) Eukaryotic stress granules are cleared by autophagy and Cdc48/VCP function. Cell, 176, 419-434. PMID: 23791177


There are 342 genes.  Reviewed (0 or Unreviewed (342

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Yal-0824
YALI0_B04180g
Q6CFS9
ALA1
2
LLPS-Yal-0545
YALI0_A01375g
Q6CI62
ASF1
3
LLPS-Yal-1282
YALI0_F03432g
Q6C315
ATG13
4
LLPS-Yal-1101
YALI0_F27907g
Q6C044
ATG18
5
LLPS-Yal-1076
YALI0_E24453g
Q6C4Q9
ATG3
6
LLPS-Yal-0218
YALI0_C20119g
Q6CBC3
ATG7
7
LLPS-Yal-1374
YALI0_E02662g
Q6C794
ATG8
8
LLPS-Yal-0543
YALI0_D12584g
Q6C9B1
ATP5
9
LLPS-Yal-0600
YALI0_B04268g
Q6CFS5
CBK1
10
LLPS-Yal-0096
YALI0_B15147g
Q6CEJ6
CCR4
11
LLPS-Yal-0806
YALI0_E03982g
Q6C740
CFT1
12
LLPS-Yal-0985
YALI0_E06061g
Q6C6U9
CHO2
13
LLPS-Yal-0811
YALI0_D20790g
Q6C8C5
CWC22
14
LLPS-Yal-0111
YALI0_C21472g
Q6CB69
DED1
15
LLPS-Yal-0875
YALI0_E00770g
Q6C7H6
DIM1
16
LLPS-Yal-1331
YALI0_D27258g
Q6C7K8
EAF1
17
LLPS-Yal-0860
YALI0_B10472g
Q6CF40
EAF7
18
LLPS-Yal-0437
YALI0_F08393g
Q6C2F3
EGD1
19
LLPS-Yal-0863
YALI0_C00605g
Q6CDH0
EGD2
20
LLPS-Yal-0071
YALI0_E26389g
Q6C4I9
ERB1
21
LLPS-Yal-0400
YALI0_E04675g
Q6C710
ESA1
22
LLPS-Yal-0321
YALI0_B04136g
Q6CFT1
ESF2
23
LLPS-Yal-0929
YALI0_F20042g
Q6C116
FEN1
24
LLPS-Yal-0295
YALI0_E02882g
Q6C784
FIP1
25
LLPS-Yal-0930
YALI0_E02772g
Q8WZM0
GCN5
26
LLPS-Yal-0211
YALI0_F04730g
Q8TFK3
GSP1
27
LLPS-Yal-0090
YALI0_E01782g
Q6C7D2
HAS1
28
LLPS-Yal-0680
YALI0_E25135g
Q6C4M9
HOG1
29
LLPS-Yal-0722
YALI0_F22671g
Q6C0Q2
INT6
30
LLPS-Yal-0780
YALI0_E13706g
Q99170
KAR2
31
LLPS-Yal-0828
YALI0_A16775g
Q6CGS0
LSM1
32
LLPS-Yal-0763
YALI0_B18722g
Q6CE42
MCM7
33
LLPS-Yal-0553
YALI0_E32373g
Q6C3T0
MED6
34
LLPS-Yal-0459
YALI0_C06347g
Q6CCU8
MON1
35
LLPS-Yal-0846
YALI0_C06490g
Q6CCU3
MPG1
36
LLPS-Yal-0081
YALI0_D22572g
Q6C855
NIP1
37
LLPS-Yal-0046
YALI0_F05918g
Q6C2Q7
NOP12
38
LLPS-Yal-1400
YALI0_E13233g
Q6C619
NPL4
39
LLPS-Yal-0555
YALI0_E09471g
O43108
PMR1
40
LLPS-Yal-0645
YALI0_F16115g
Q6C1H8
PRT1
41
LLPS-Yal-1486
YALI0_D21604g
Q6C893
PSD1
42
LLPS-Yal-0893
YALI0_D13750g
Q6C961
RAT1
43
LLPS-Yal-0334
YALI0_D20130g
Q8WZL4
RIM20
44
LLPS-Yal-1130
YALI0_F12397g
Q9UVF6
RIM21
45
LLPS-Yal-0646
YALI0_C15895g
Q6CBS7
RPL17
46
LLPS-Yal-0059
YALI0_B04224g
Q6CFS7
RPL44
47
LLPS-Yal-0379
YALI0_A18205g
Q6CGM0
RPS0
48
LLPS-Yal-1239
YALI0_C21868g
Q6CB52
RVB1
49
LLPS-Yal-0176
YALI0_E31449g
Q6C3X6
RVB2
50
LLPS-Yal-1134
YALI0_B12694g
Q6CEV2
SEC16
51
LLPS-Yal-1475
YALI0_E18260g
Q6C5G5
set-2
52
LLPS-Yal-0842
YALI0_D09251g
Q6C9Q1
SPB1
53
LLPS-Yal-0486
YALI0_C11561g
Q6CC84
SPT5
54
LLPS-Yal-1307
YALI0_F11253g
Q6C233
SQS1
55
LLPS-Yal-0672
YALI0_F00572g
Q6C3D7
STE20
56
LLPS-Yal-0874
YALI0_A11157g
Q6CH90
SUB2
57
LLPS-Yal-0389
YALI0_E00946g
Q6C7G8
SWC5
58
LLPS-Yal-0777
YALI0_F18942g
Q6C161
TIF32
59
LLPS-Yal-0575
YALI0_A02695g
Q6CI08
TIF34
60
LLPS-Yal-0641
YALI0_E03828g
Q6C747
TIF35
61
LLPS-Yal-0649
YALI0_E27940g
Q6C4C3
TIF6
62
LLPS-Yal-1022
YALI0_F16049g
Q6C1I1
TRM7
63
LLPS-Yal-1421
YALI0_D07890g
Q6C9W0
UBC12
64
LLPS-Yal-0917
YALI0_B23276g
Q6CDK3
VMA21
65
LLPS-Yal-0089
YALI0_B23122g
Q6CDL0
YALI0B23122g
66
LLPS-Yal-1063
YALI0_E26851g
Q6C4H1
YALI0E26851g
67
LLPS-Yal-0966
YALI0_F14839g
Q6C1N1
YALI0F14839g
68
LLPS-Yal-0083
YALI0_A00352g
Q6CI99
YALI0_A00352g
69
LLPS-Yal-0471
YALI0_A01353g
Q6CI63
YALI0_A01353g
70
LLPS-Yal-0700
YALI0_A03575g
Q6CHY2
YALI0_A03575g
71
LLPS-Yal-0975
YALI0_A04345g
Q6CHW0
YALI0_A04345g
72
LLPS-Yal-0498
YALI0_A04961g
Q6CHU2
YALI0_A04961g
73
LLPS-Yal-0361
YALI0_A05181g
Q6CHT5
YALI0_A05181g
74
LLPS-Yal-0073
YALI0_A05555g
Q6CHS3
YALI0_A05555g
75
LLPS-Yal-0694
YALI0_A06589g
Q6CHQ0
YALI0_A06589g
76
LLPS-Yal-0432
YALI0_A08151g
Q6CHJ6
YALI0_A08151g
77
LLPS-Yal-1384
YALI0_A09845g
B5RSJ9
YALI0_A09845g
78
LLPS-Yal-0711
YALI0_A09900g
Q6CHD8
YALI0_A09900g
79
LLPS-Yal-0775
YALI0_A09922g
Q6CHD7
YALI0_A09922g
80
LLPS-Yal-0773
YALI0_A10164g
Q6CHC9
YALI0_A10164g
81
LLPS-Yal-0887
YALI0_A10296g
Q6CHC3
YALI0_A10296g
82
LLPS-Yal-0014
YALI0_A10879g
Q6CHA1
YALI0_A10879g
83
LLPS-Yal-0115
YALI0_A11099g
Q6CH93
YALI0_A11099g
84
LLPS-Yal-0663
YALI0_A12067g
Q6CH61
YALI0_A12067g
85
LLPS-Yal-0022
YALI0_A12155g
Q6CH57
YALI0_A12155g
86
LLPS-Yal-0320
YALI0_A13101g
Q6CH33
YALI0_A13101g
87
LLPS-Yal-1041
YALI0_A15686g
Q6CGV9
YALI0_A15686g
88
LLPS-Yal-1064
YALI0_A16588g
Q6CGS6
YALI0_A16588g
89
LLPS-Yal-0335
YALI0_A17468g
Q6CGP7
YALI0_A17468g
90
LLPS-Yal-0692
YALI0_A18161g
Q6CGM2
YALI0_A18161g
91
LLPS-Yal-0611
YALI0_A19074g
Q6CGI3
YALI0_A19074g
92
LLPS-Yal-0025
YALI0_A20504g
Q6CGC3
YALI0_A20504g
93
LLPS-Yal-0219
YALI0_A20746g
Q6CGB1
YALI0_A20746g
94
LLPS-Yal-0154
YALI0_A20768g
Q6CGB0
YALI0_A20768g
95
LLPS-Yal-0034
YALI0_B01034g
Q6CG42
YALI0_B01034g
96
LLPS-Yal-0036
YALI0_B01224g
W0TYP5
YALI0_B01224g
97
LLPS-Yal-1556
YALI0_B01870g
Q6CG09
YALI0_B01870g
98
LLPS-Yal-1123
YALI0_B02838g
Q6CFX2
YALI0_B02838g
99
LLPS-Yal-0008
YALI0_B03278g
Q6CFV8
YALI0_B03278g
100
LLPS-Yal-0105
YALI0_B03630g
Q6CFU6
YALI0_B03630g
101
LLPS-Yal-0572
YALI0_B03960g
Q6CFT8
YALI0_B03960g
102
LLPS-Yal-0250
YALI0_B04774g
Q6CFQ5
YALI0_B04774g
103
LLPS-Yal-1152
YALI0_B05368g
Q6CFN6
YALI0_B05368g
104
LLPS-Yal-1473
YALI0_B07381g
Q6CFF9
YALI0_B07381g
105
LLPS-Yal-0579
YALI0_B08748g
Q6CFB0
YALI0_B08748g
106
LLPS-Yal-0173
YALI0_B08756g
Q6CFA9
YALI0_B08756g
107
LLPS-Yal-0002
YALI0_B08866g
Q6CFA4
YALI0_B08866g
108
LLPS-Yal-0574
YALI0_B10065g
Q6CF59
YALI0_B10065g
109
LLPS-Yal-0965
YALI0_B10758g
Q6CF29
YALI0_B10758g
110
LLPS-Yal-1522
YALI0_B11286g
Q6CF09
YALI0_B11286g
111
LLPS-Yal-0032
YALI0_B11374g
Q6CF05
YALI0_B11374g
112
LLPS-Yal-0632
YALI0_B11396g
Q6CF04
YALI0_B11396g
113
LLPS-Yal-0056
YALI0_B11880g
Q6CEY4
YALI0_B11880g
114
LLPS-Yal-1217
YALI0_B12496g
Q6CEV9
YALI0_B12496g
115
LLPS-Yal-0225
YALI0_B14146g
Q6CEP2
YALI0_B14146g
116
LLPS-Yal-0877
YALI0_B14267g
Q6CEN6
YALI0_B14267g
117
LLPS-Yal-0660
YALI0_B14663g
Q6CEL8
YALI0_B14663g
118
LLPS-Yal-0805
YALI0_B15015g
Q6CEK2
YALI0_B15015g
119
LLPS-Yal-1292
YALI0_B15081g
Q6CEJ9
YALI0_B15081g
120
LLPS-Yal-0275
YALI0_B15103g
Q6CEJ8
YALI0_B15103g
121
LLPS-Yal-0502
YALI0_B15224g
Q6CEJ2
YALI0_B15224g
122
LLPS-Yal-0862
YALI0_B15268g
Q6CEJ0
YALI0_B15268g
123
LLPS-Yal-0867
YALI0_B15400g
Q6CEI3
YALI0_B15400g
124
LLPS-Yal-0796
YALI0_B15708g
Q6CEG9
YALI0_B15708g
125
LLPS-Yal-0912
YALI0_B16258g
Q6CEE6
YALI0_B16258g
126
LLPS-Yal-0634
YALI0_B16368g
Q6CEE2
YALI0_B16368g
127
LLPS-Yal-0433
YALI0_B16544g
Q6CED4
YALI0_B16544g
128
LLPS-Yal-0512
YALI0_B17402g
Q6CE97
YALI0_B17402g
129
LLPS-Yal-1318
YALI0_B17754g
Q6CE83
YALI0_B17754g
130
LLPS-Yal-0171
YALI0_B17798g
Q6CE81
YALI0_B17798g
131
LLPS-Yal-0821
YALI0_B18700g
Q6CE43
YALI0_B18700g
132
LLPS-Yal-0259
YALI0_B19206g
Q6CE22
YALI0_B19206g
133
LLPS-Yal-0285
YALI0_B21098g
Q6CDU6
YALI0_B21098g
134
LLPS-Yal-0626
YALI0_B22638g
Q6CDN2
YALI0_B22638g
135
LLPS-Yal-0373
YALI0_B22968g
Q6CDL7
YALI0_B22968g
136
LLPS-Yal-0569
YALI0_B23056g
Q6CDL3
YALI0_B23056g
137
LLPS-Yal-0095
YALI0_B23298g
Q6CDK2
YALI0_B23298g
138
LLPS-Yal-0362
YALI0_C00363g
Q6CDI0
YALI0_C00363g
139
LLPS-Yal-0130
YALI0_C00693g
Q6CDG6
YALI0_C00693g
140
LLPS-Yal-0354
YALI0_C00913g
Q6CDF6
YALI0_C00913g
141
LLPS-Yal-0180
YALI0_C00957g
Q6CDF4
YALI0_C00957g
142
LLPS-Yal-0709
YALI0_C04213g
Q6CD31
YALI0_C04213g
143
LLPS-Yal-0615
YALI0_C05148g
Q6CCZ9
YALI0_C05148g
144
LLPS-Yal-0283
YALI0_C07524g
Q6CCQ3
YALI0_C07524g
145
LLPS-Yal-0156
YALI0_C09438g
Q6CCH1
YALI0_C09438g
146
LLPS-Yal-1304
YALI0_C09735g
Q6CCF9
YALI0_C09735g
147
LLPS-Yal-0655
YALI0_C10648g
Q6CCC5
YALI0_C10648g
148
LLPS-Yal-0517
YALI0_C11407g
Q6CC91
YALI0_C11407g
149
LLPS-Yal-1411
YALI0_C15400g
Q6CBU5
YALI0_C15400g
150
LLPS-Yal-1286
YALI0_C15829g
Q6CBT0
YALI0_C15829g
151
LLPS-Yal-0456
YALI0_C16819g
Q6CBP2
YALI0_C16819g
152
LLPS-Yal-1436
YALI0_C17325g
Q6CBM3
YALI0_C17325g
153
LLPS-Yal-1539
YALI0_C17831g
Q6CBL1
YALI0_C17831g
154
LLPS-Yal-1258
YALI0_C18161g
Q6CBJ8
YALI0_C18161g
155
LLPS-Yal-0451
YALI0_C18469g
Q6CBI4
YALI0_C18469g
156
LLPS-Yal-0870
YALI0_C18711g
Q6CBH5
YALI0_C18711g
157
LLPS-Yal-0183
YALI0_C19382g
Q6CBF1
YALI0_C19382g
158
LLPS-Yal-1464
YALI0_C19682g
Q6CBE1
YALI0_C19682g
159
LLPS-Yal-0322
YALI0_C21846g
Q6CB53
YALI0_C21846g
160
LLPS-Yal-0956
YALI0_C21956g
Q6CB48
YALI0_C21956g
161
LLPS-Yal-0399
YALI0_C23144g
Q6CAZ5
YALI0_C23144g
162
LLPS-Yal-1097
YALI0_C23232g
Q6CAZ0
YALI0_C23232g
163
LLPS-Yal-1042
YALI0_C23947g
Q6CAV9
YALI0_C23947g
164
LLPS-Yal-0993
YALI0_D00297g
Q6CAS7
YALI0_D00297g
165
LLPS-Yal-0676
YALI0_D01133g
Q6CAP0
YALI0_D01133g
166
LLPS-Yal-1001
YALI0_D01485g
Q6CAM4
YALI0_D01485g
167
LLPS-Yal-0461
YALI0_D01936g
Q6CAK8
YALI0_D01936g
168
LLPS-Yal-0727
YALI0_D02101g
Q6CAK0
YALI0_D02101g
169
LLPS-Yal-0263
YALI0_D03718g
Q6CAD6
YALI0_D03718g
170
LLPS-Yal-1347
YALI0_D03982g
Q6CAC8
YALI0_D03982g
171
LLPS-Yal-0220
YALI0_D04114g
Q6CAC2
YALI0_D04114g
172
LLPS-Yal-0525
YALI0_D04334g
Q6CAB2
YALI0_D04334g
173
LLPS-Yal-0493
YALI0_D04444g
Q6CAA7
YALI0_D04444g
174
LLPS-Yal-0017
YALI0_D05697g
B5FVE0
YALI0_D05697g
175
LLPS-Yal-0273
YALI0_D05731g
Q6CA56
YALI0_D05731g
176
LLPS-Yal-0728
YALI0_D06259g
Q6CA35
YALI0_D06259g
177
LLPS-Yal-0729
YALI0_D06303g
Q6CA33
YALI0_D06303g
178
LLPS-Yal-0607
YALI0_D06523g
Q6CA23
YALI0_D06523g
179
LLPS-Yal-0771
YALI0_D06578g
B5FVE1
YALI0_D06578g
180
LLPS-Yal-0546
YALI0_D07436g
Q6C9Y1
YALI0_D07436g
181
LLPS-Yal-0086
YALI0_D07700g
Q6C9W9
YALI0_D07700g
182
LLPS-Yal-1144
YALI0_D09119g
Q6C9Q7
YALI0_D09119g
183
LLPS-Yal-0135
YALI0_D10087g
Q6C9L8
YALI0_D10087g
184
LLPS-Yal-0261
YALI0_D10263g
Q6C9L1
YALI0_D10263g
185
LLPS-Yal-0483
YALI0_D11066g
Q6C9H9
YALI0_D11066g
186
LLPS-Yal-0129
YALI0_D11352g
Q6C9G7
YALI0_D11352g
187
LLPS-Yal-0112
YALI0_D11418g
Q6C9G4
YALI0_D11418g
188
LLPS-Yal-0158
YALI0_D11770g
Q6C9E8
YALI0_D11770g
189
LLPS-Yal-0588
YALI0_D12012g
Q6C9D7
YALI0_D12012g
190
LLPS-Yal-0170
YALI0_D12078g
Q6C9D5
YALI0_D12078g
191
LLPS-Yal-0147
YALI0_D12188g
Q6C9D0
YALI0_D12188g
192
LLPS-Yal-0989
YALI0_D12364g
Q6C9C2
YALI0_D12364g
193
LLPS-Yal-0551
YALI0_D13104g
Q6C986
YALI0_D13104g
194
LLPS-Yal-0266
YALI0_D13464g
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