Ictalurus punctatus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 104 genes.  Reviewed (0 or Unreviewed (104

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Icp-1320
ENSIPUG00000001018.1
A0A2D0PVU4
ago2
2
LLPS-Icp-0170
ENSIPUG00000015794.1
W5U6Z9
AKAP17A
3
LLPS-Icp-2497
ENSIPUG00000009469.1
A0A2D0T1N7
alyref
4
LLPS-Icp-1713
ENSIPUG00000021172.1
A0A2D0SBB4
anxa2
5
LLPS-Icp-1999
ENSIPUG00000020789.1
A0A2D0PNF9
arl6ip4
6
LLPS-Icp-0999
ENSIPUG00000015422.1
A0A2D0T6X7
atr
7
LLPS-Icp-0974
ENSIPUG00000008211.1
A0A2D0QBX6
c28h9orf78
8
LLPS-Icp-0818
ENSIPUG00000002679.1
A0A2D0Q1G2
casc3
9
LLPS-Icp-1971
ENSIPUG00000015420.1
A0A2D0QSF2
ccnl1
10
LLPS-Icp-0189
ENSIPUG00000004377.1
A0A2D0RR20
cdc5l
11
LLPS-Icp-0488
ENSIPUG00000015647.1
A0A2D0RJT0
cdk1
12
LLPS-Icp-3690
ENSIPUG00000019436.1
E3TG08
CDK7
13
LLPS-Icp-0257
ENSIPUG00000021301.1
W5UIF0
CDK9
14
LLPS-Icp-3785
ENSIPUG00000007888.1
A0A2D0S486
clk2
15
LLPS-Icp-2679
ENSIPUG00000013544.1
A0A2D0RG93
csnk1a1
16
LLPS-Icp-0630
ENSIPUG00000002043.1
A0A2D0SLQ7
ctnnbl1
17
LLPS-Icp-0892
ENSIPUG00000002564.1
A0A2D0T2A8
ddx46
18
LLPS-Icp-2833
ENSIPUG00000016755.1
W5UBI7
DGCR8
19
LLPS-Icp-3245
ENSIPUG00000009048.1
A0A2D0Q2S1
dnajb1
20
LLPS-Icp-0229
ENSIPUG00000019321.1
A0A2D0RM91
dnajc17
21
LLPS-Icp-4026
ENSIPUG00000003528.1
A0A2D0RGN3
egf
22
LLPS-Icp-0587
ENSIPUG00000003713.1
E3TG53
ERH
23
LLPS-Icp-2805
ENSIPUG00000015996.1
A0A2D0Q9P8
fam76b
24
LLPS-Icp-4122
ENSIPUG00000020131.1
A0A2D0PWI0
fam83h
25
LLPS-Icp-0215
ENSIPUG00000018838.1
A0A2D0RXZ0
fancd2
26
LLPS-Icp-1342
ENSIPUG00000004103.1
A0A2D0SEV2
fanci
27
LLPS-Icp-2121
ENSIPUG00000001574.1
A0A2D0Q4R5
fbxl18
28
LLPS-Icp-2863
ENSIPUG00000017614.1
A0A2D0SQ10
frmd8
29
LLPS-Icp-4064
ENSIPUG00000003729.1
A0A2D0PR48
gli3
30
LLPS-Icp-0355
ENSIPUG00000023868.1
A0A2D0R506
gsk3b
31
LLPS-Icp-2064
ENSIPUG00000014710.1
A0A2D0QVA3
hipk2
32
LLPS-Icp-1383
ENSIPUG00000021905.1
W5UDD1
ilf2
33
LLPS-Icp-3149
ENSIPUG00000021552.1
A0A2D0Q5M2
LOC100304672
34
LLPS-Icp-1756
ENSIPUG00000017139.1
Q1L608
LOC100305068
35
LLPS-Icp-1007
ENSIPUG00000004776.1
A0A2D0PIS2
LOC108254894
36
LLPS-Icp-2699
ENSIPUG00000023118.1
A0A2D0PRQ0
LOC108256391
37
LLPS-Icp-2823
ENSIPUG00000008085.1
A0A2D0PSK8
LOC108256547
38
LLPS-Icp-2832
ENSIPUG00000009459.1
A0A2D0PTY0
LOC108256770
39
LLPS-Icp-2435
ENSIPUG00000014275.1
A0A2D0QAK1
LOC108259620
40
LLPS-Icp-1300
ENSIPUG00000017608.1
A0A2D0QF13
LOC108260302
41
LLPS-Icp-0460
ENSIPUG00000007978.1
A0A2D0QHD4
LOC108261381
42
LLPS-Icp-0481
ENSIPUG00000021649.1
A0A2D0QT69
LOC108264458
43
LLPS-Icp-3261
ENSIPUG00000019221.1
A0A2D0QVC5
LOC108264902
44
LLPS-Icp-2653
ENSIPUG00000008062.1
A0A2D0QXX4
LOC108265400
45
LLPS-Icp-4204
ENSIPUG00000009563.1
A0A2D0R111
LOC108265900
46
LLPS-Icp-0721
ENSIPUG00000002730.1
A0A2D0R2Y3
LOC108266326
47
LLPS-Icp-1055
ENSIPUG00000012096.1
A0A2D0RAU9
LOC108267776
48
LLPS-Icp-3971
ENSIPUG00000019958.1
A0A2D0RJB4
LOC108269322
49
LLPS-Icp-2922
ENSIPUG00000022432.1
A0A2D0SK75
LOC108275985
50
LLPS-Icp-1570
ENSIPUG00000008750.1
A0A2D0SZ47
LOC108278759
51
LLPS-Icp-0462
ENSIPUG00000008734.1
W5U6Q9
LUC7L2
52
LLPS-Icp-3020
ENSIPUG00000001389.1
E3TE26
NAGK
53
LLPS-Icp-1524
ENSIPUG00000018271.1
A0A2D0Q916
nono
54
LLPS-Icp-0135
ENSIPUG00000007055.1
E3TFH4
NOSIP
55
LLPS-Icp-3949
ENSIPUG00000019291.1
A0A2D0SZ38
nsrp1
56
LLPS-Icp-1958
ENSIPUG00000017552.1
A0A2D0TBA1
nuak2
57
LLPS-Icp-2595
ENSIPUG00000022146.1
W5UE69
Ogg1
58
LLPS-Icp-3500
ENSIPUG00000004114.1
W5UKA8
P2RY12
59
LLPS-Icp-0300
ENSIPUG00000013269.1
A0A2D0QFQ2
plrg1
60
LLPS-Icp-1253
ENSIPUG00000003440.1
A0A2D0RYW0
ppig
61
LLPS-Icp-3778
ENSIPUG00000000942.1
G9I935
prmt4
62
LLPS-Icp-2782
ENSIPUG00000013084.1
A0A2D0RF05
prpf19
63
LLPS-Icp-1945
ENSIPUG00000023230.1
A0A2D0STK3
prpf8
64
LLPS-Icp-3907
ENSIPUG00000002025.1
E3TEB7
PSA3
65
LLPS-Icp-0298
ENSIPUG00000013192.1
W5UEK8
pspc1
66
LLPS-Icp-0764
ENSIPUG00000015659.1
A0A2D0RRU6
ptbp1
67
LLPS-Icp-0063
ENSIPUG00000007699.1
W5U8A9
Rbm17
68
LLPS-Icp-2225
ENSIPUG00000007230.1
A0A2D0SZ58
rbmx2
69
LLPS-Icp-1846
ENSIPUG00000018061.1
A0A2D0RCP8
rfwd2
70
LLPS-Icp-0534
ENSIPUG00000002444.1
A0A2D0S8M4
rnf151
71
LLPS-Icp-0767
ENSIPUG00000011746.1
A0A2D0SNV6
rnps1
72
LLPS-Icp-3164
ENSIPUG00000024300.1
E3TEI6
RU2B
73
LLPS-Icp-1038
ENSIPUG00000012503.1
W5UL89
Sarnp
74
LLPS-Icp-1292
ENSIPUG00000022924.1
A0A2D0R8V2
sf1
75
LLPS-Icp-2468
ENSIPUG00000002470.1
A0A2D0QZ06
sf3a1
76
LLPS-Icp-0739
ENSIPUG00000019071.1
A0A2D0TAL2
sf3a2
77
LLPS-Icp-1771
ENSIPUG00000011603.1
A0A2D0S5F8
sf3a3
78
LLPS-Icp-0250
ENSIPUG00000013171.1
A0A2D0R2M8
sf3b1
79
LLPS-Icp-0313
ENSIPUG00000013076.1
W5UL94
SFPQ
80
LLPS-Icp-4080
ENSIPUG00000020309.1
A0A2D0QZ31
snrnp200
81
LLPS-Icp-3792
ENSIPUG00000016053.1
W5UFG6
snrnp35
82
LLPS-Icp-2899
ENSIPUG00000013994.1
A0A2D0Q7E5
snrnp70
83
LLPS-Icp-3303
ENSIPUG00000008841.1
W5U982
snrpa
84
LLPS-Icp-0115
ENSIPUG00000023040.1
A0A2D0RWB7
snrpa1
85
LLPS-Icp-1018
ENSIPUG00000007155.1
A0A2D0Q7Q1
son
86
LLPS-Icp-3775
ENSIPUG00000010649.1
E3TF86
SPF27
87
LLPS-Icp-3615
ENSIPUG00000024416.1
W5UFQ3
spop
88
LLPS-Icp-0196
ENSIPUG00000016845.1
A0A2D0RNE5
srrm1
89
LLPS-Icp-2588
ENSIPUG00000012208.1
A0A2D0RSB5
srsf11
90
LLPS-Icp-0343
ENSIPUG00000004066.1
W5UTC9
SRSF2
91
LLPS-Icp-0868
ENSIPUG00000017382.1
A0A2D0TB98
srsf3
92
LLPS-Icp-1547
ENSIPUG00000011708.1
A0A2D0RS46
srsf7
93
LLPS-Icp-1931
ENSIPUG00000005511.1
A0A2D0SPZ5
srsf9
94
LLPS-Icp-2361
ENSIPUG00000020442.1
W5UMT5
Stat3
95
LLPS-Icp-0558
ENSIPUG00000020934.1
W5UEP3
sumo1
96
LLPS-Icp-1462
ENSIPUG00000024933.1
W5UIN1
TGFBR1
97
LLPS-Icp-3114
ENSIPUG00000024586.1
A0A2D0RUP6
ttc14
98
LLPS-Icp-0583
ENSIPUG00000013962.1
A0A2D0Q8C5
u2af1
99
LLPS-Icp-1746
ENSIPUG00000009077.1
A0A2D0S5M5
u2af2
100
LLPS-Icp-1759
ENSIPUG00000007822.1
A0A2D0SVA2
u2surp
101
LLPS-Icp-0034
ENSIPUG00000012891.1
W5UJN6
Xpo1
102
LLPS-Icp-0047
ENSIPUG00000018136.1
A0A2D0QAY0
ythdc1
103
LLPS-Icp-3508
ENSIPUG00000024576.1
A0A2D0PIE6
zc3h11a
104
LLPS-Icp-1564
ENSIPUG00000024063.1
A0A2D0RL50
znf106