Cavia porcellus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 113 genes.  Reviewed (0 or Unreviewed (113

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Cap-1968
ENSCPOG00000010428.4
A0A286Y3L3
AGO2
2
LLPS-Cap-0174
ENSCPOG00000013710.4
A0A286XMT3
ALYREF
3
LLPS-Cap-1260
ENSCPOG00000008321.4
H0VC31
ANXA10
4
LLPS-Cap-0026
ENSCPOG00000006400.4
H0V7P8
ANXA2
5
LLPS-Cap-2183
ENSCPOG00000031539.1
A0A286XKR0
Arl6ip4
6
LLPS-Cap-4418
ENSCPOG00000007001.4
H0V935
ATR
7
LLPS-Cap-0223
ENSCPOG00000020532.2
H0VYK1
BCAS2
8
LLPS-Cap-2244
ENSCPOG00000009285.4
H0VEA0
C9orf78
9
LLPS-Cap-2097
ENSCPOG00000015465.4
A0A286XEC5
CARM1
10
LLPS-Cap-0241
ENSCPOG00000015139.4
H0VSN3
CASC3
11
LLPS-Cap-0990
ENSCPOG00000000961.4
H0UV42
CDC5L
12
LLPS-Cap-1692
ENSCPOG00000005402.4
H0V5D3
Cdk1
13
LLPS-Cap-1730
ENSCPOG00000014671.4
H0VRK4
CDK7
14
LLPS-Cap-0790
ENSCPOG00000010359.4
H0VGQ5
Cdk9
15
LLPS-Cap-4019
ENSCPOG00000007438.4
H0VA42
CDKL5
16
LLPS-Cap-4497
ENSCPOG00000003176.4
H0V093
CLK2
17
LLPS-Cap-0351
ENSCPOG00000010759.4
A0A286XNH3
COP1
18
LLPS-Cap-2347
ENSCPOG00000036829.1
A0A286X950
CSNK1A1
19
LLPS-Cap-1707
ENSCPOG00000010269.4
A0A286XU91
CTNNBL1
20
LLPS-Cap-1732
ENSCPOG00000002335.4
H0UYB6
DDX39B
21
LLPS-Cap-0233
ENSCPOG00000011362.4
A0A286XGD2
DDX46
22
LLPS-Cap-1599
ENSCPOG00000002952.4
A0A286XTU9
DGCR8
23
LLPS-Cap-3525
ENSCPOG00000035272.1
A0A286XQ62
DNAJB1
24
LLPS-Cap-2809
ENSCPOG00000014110.4
H0VQ99
Dnajc17
25
LLPS-Cap-1669
ENSCPOG00000024699.2
H0WAZ0
DYRK3
26
LLPS-Cap-3528
ENSCPOG00000000779.4
H0UUP9
EGF
27
LLPS-Cap-1575
ENSCPOG00000034059.1
A0A286XXY4
ERH
28
LLPS-Cap-0110
ENSCPOG00000012533.4
H0VLN2
EZH1
29
LLPS-Cap-3094
ENSCPOG00000040456.1
A0A286X8B5
FAM76B
30
LLPS-Cap-1398
ENSCPOG00000013323.4
H0VNG5
FAM83H
31
LLPS-Cap-0674
ENSCPOG00000005717.4
H0V648
FANCD2
32
LLPS-Cap-4463
ENSCPOG00000007259.4
H0V9N9
FANCI
33
LLPS-Cap-0362
ENSCPOG00000009042.4
H0VDQ8
FBXL18
34
LLPS-Cap-4703
ENSCPOG00000006553.4
H0V817
FGFR1
35
LLPS-Cap-3894
ENSCPOG00000010221.4
H0VGE3
FRMD8
36
LLPS-Cap-1273
ENSCPOG00000038302.1
A0A286XTI8
FUS
37
LLPS-Cap-4191
ENSCPOG00000011463.4
H0VJ84
FYTTD1
38
LLPS-Cap-4439
ENSCPOG00000013233.4
H0VN98
GLI3
39
LLPS-Cap-2979
ENSCPOG00000014311.4
H0VQQ9
GSK3B
40
LLPS-Cap-3487
ENSCPOG00000005317.4
H0V563
HIF1A
41
LLPS-Cap-4542
ENSCPOG00000024199.2
H0VVK2
HIF3A
42
LLPS-Cap-4276
ENSCPOG00000007271.4
H0V9Q0
HIPK2
43
LLPS-Cap-2965
ENSCPOG00000020972.2
H0VWR2
Hnrnpa1
44
LLPS-Cap-0075
ENSCPOG00000036630.1
A0A286XS96
HNRNPA2B1
45
LLPS-Cap-2847
ENSCPOG00000033682.1
A0A286XYQ5
HSPA6
46
LLPS-Cap-3645
ENSCPOG00000007441.4
A0A286Y342
Hsph1
47
LLPS-Cap-1956
ENSCPOG00000005835.4
H0V6E6
ILF2
48
LLPS-Cap-1868
ENSCPOG00000013726.4
H0VPE3
ILF3
49
LLPS-Cap-1923
ENSCPOG00000014260.4
A0A286Y3C5
IVNS1ABP
50
LLPS-Cap-2743
ENSCPOG00000026318.2
H0VVB1
Kpna2
51
LLPS-Cap-1987
ENSCPOG00000038762.1
A0A286XP64
LOC100726317
52
LLPS-Cap-3861
ENSCPOG00000032552.1
A0A286X9K5
LOC100728040
53
LLPS-Cap-4110
ENSCPOG00000013306.4
H0VNF2
NAGK
54
LLPS-Cap-1546
ENSCPOG00000010263.4
H0VGH4
Nono
55
LLPS-Cap-2331
ENSCPOG00000011811.4
H0VK18
NOSIP
56
LLPS-Cap-3867
ENSCPOG00000022305.2
H0VUN0
NR5A1
57
LLPS-Cap-3654
ENSCPOG00000031448.1
A0A286XVY9
NSRP1
58
LLPS-Cap-4451
ENSCPOG00000011773.4
A0A286X829
NUAK2
59
LLPS-Cap-3520
ENSCPOG00000006126.4
H0V731
NXF1
60
LLPS-Cap-0856
ENSCPOG00000008778.4
H0VD39
OGG1
61
LLPS-Cap-0983
ENSCPOG00000025574.2
A0A286XTB5
PABPN1
62
LLPS-Cap-2612
ENSCPOG00000013511.3
H0VNW7
PCBP1
63
LLPS-Cap-3170
ENSCPOG00000003479.4
H0V0Z1
PLRG1
64
LLPS-Cap-4175
ENSCPOG00000030068.1
A0A286X870
PNN
65
LLPS-Cap-0314
ENSCPOG00000033985.1
A0A286XCM6
PPIG
66
LLPS-Cap-0007
ENSCPOG00000020688.2
H0WDA2
PRPF19
67
LLPS-Cap-2069
ENSCPOG00000010379.4
H0VGR9
PRPF8
68
LLPS-Cap-4336
ENSCPOG00000006114.4
A0A286XAZ6
PSMA3
69
LLPS-Cap-0802
ENSCPOG00000000395.4
A0A286Y0W6
PSPC1
70
LLPS-Cap-0052
ENSCPOG00000025512.2
A0A286XA15
PTBP1
71
LLPS-Cap-2551
ENSCPOG00000009942.4
H0W2V0
RAPGEF1
72
LLPS-Cap-3158
ENSCPOG00000005679.4
A0A286Y523
RBM17
73
LLPS-Cap-4259
ENSCPOG00000032744.1
A0A286XVY2
RBMX2
74
LLPS-Cap-1778
ENSCPOG00000011654.4
H0VJP0
RNF151
75
LLPS-Cap-0519
ENSCPOG00000002066.4
A0A286XMB7
RNPS1
76
LLPS-Cap-2622
ENSCPOG00000011755.4
H0VJX3
Sarnp
77
LLPS-Cap-0953
ENSCPOG00000012290.4
H0W6N5
SF1
78
LLPS-Cap-0627
ENSCPOG00000014589.4
H0VRD6
SF3A1
79
LLPS-Cap-3788
ENSCPOG00000032868.1
A0A286XXY9
SF3A2
80
LLPS-Cap-0316
ENSCPOG00000008660.4
H0VCU8
SF3A3
81
LLPS-Cap-1564
ENSCPOG00000009353.4
H0VEF4
SF3B1
82
LLPS-Cap-1572
ENSCPOG00000015018.4
H0VSD7
Sfpq
83
LLPS-Cap-0571
ENSCPOG00000021314.2
A0A286Y0G7
SMAD3
84
LLPS-Cap-0214
ENSCPOG00000006776.4
H0V8J7
SNRNP200
85
LLPS-Cap-2110
ENSCPOG00000002548.4
H0UYU3
SNRNP35
86
LLPS-Cap-3735
ENSCPOG00000019589.2
H0W1R5
SNRNP70
87
LLPS-Cap-1023
ENSCPOG00000010875.4
A0A286XJP1
SNRPA
88
LLPS-Cap-0670
ENSCPOG00000005735.4
H0V664
SNRPA1
89
LLPS-Cap-0442
ENSCPOG00000037539.1
A0A286XPN9
SNRPB2
90
LLPS-Cap-2753
ENSCPOG00000024278.2
A0A286Y4W4
SON
91
LLPS-Cap-1838
ENSCPOG00000010810.4
H0VHR4
SPOP
92
LLPS-Cap-0226
ENSCPOG00000015594.4
H0VTQ5
SRRM1
93
LLPS-Cap-0171
ENSCPOG00000036716.1
A0A286XFJ9
SRRM2
94
LLPS-Cap-2500
ENSCPOG00000032681.1
H0VJX7
Srsf1
95
LLPS-Cap-0680
ENSCPOG00000009554.4
H0VEW2
SRSF11
96
LLPS-Cap-0992
ENSCPOG00000039027.1
A0A286XIK7
SRSF3
97
LLPS-Cap-3511
ENSCPOG00000036234.1
A0A286X8H7
SRSF4
98
LLPS-Cap-0318
ENSCPOG00000033318.1
A0A286X9I9
SRSF7
99
LLPS-Cap-1264
ENSCPOG00000033486.1
A0A286XY31
SRSF9
100
LLPS-Cap-3478
ENSCPOG00000007939.4
A0A286XJ83
STAT3
101
LLPS-Cap-3330
ENSCPOG00000039864.1
A0A286XR67
SUMO1
102
LLPS-Cap-3041
ENSCPOG00000026988.2
H0VYW8
TAP1
103
LLPS-Cap-2991
ENSCPOG00000014890.4
H0VS30
TGFBR1
104
LLPS-Cap-0479
ENSCPOG00000006313.4
H0V7I1
TRA2B
105
LLPS-Cap-0781
ENSCPOG00000015311.4
H0VT22
TTC14
106
LLPS-Cap-0650
ENSCPOG00000001582.4
H0UWJ4
U2AF2
107
LLPS-Cap-0834
ENSCPOG00000011656.4
H0VJP1
U2SURP
108
LLPS-Cap-2512
ENSCPOG00000034053.1
A0A286XB55
XPO1
109
LLPS-Cap-3131
ENSCPOG00000010929.4
H0VI15
YTHDC1
110
LLPS-Cap-0596
ENSCPOG00000012421.4
A0A286X843
ZC3H11A
111
LLPS-Cap-3998
ENSCPOG00000014980.4
H0VSA7
ZNF106
112
LLPS-Cap-2538
ENSCPOG00000033475.1
A0A286XT18
ZNF131
113
LLPS-Cap-2891
ENSCPOG00000036112.1
A0A286XNK7
ZNF688