Caenorhabditis elegans      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 58 genes.  Reviewed (5 or Unreviewed (53

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Cae-0241
WBGene00000410
Q9TVL3
cdk-9
2
LLPS-Cae-0039
WBGene00001746
Q9U2Q9
gsk-3
3
LLPS-Cae-0342
WBGene00003209
Q94420
mel-26
4
LLPS-Cae-0205
WBGene00004187
P34369
prp-8
5
LLPS-Cae-0056
WBGene00004888
P55853
smo-1
6
LLPS-Cae-1168
WBGene00000106
O16720
alg-2
7
LLPS-Cae-1043
WBGene00000226
Q22258
atl-1
8
LLPS-Cae-0600
WBGene00015207
Q09217
B0495.8
9
LLPS-Cae-1934
WBGene00020441
Q22417
bcas-2
10
LLPS-Cae-0766
WBGene00015581
Q95YF1
C07H6.4
11
LLPS-Cae-0802
WBGene00007627
Q09252
ccdc-55
12
LLPS-Cae-0448
WBGene00008386
G5EFC4
cdc-5l
13
LLPS-Cae-0633
WBGene00000408
G5EFV5
cdk-7
14
LLPS-Cae-1430
WBGene00017025
Q9TYS1
CELE_D1037.1
15
LLPS-Cae-0874
WBGene00018776
Q965K2
CELE_F53H1.1
16
LLPS-Cae-0457
WBGene00019711
P91401
CELE_M01E11.2
17
LLPS-Cae-1328
WBGene00011253
O62349
CELE_R11H6.5
18
LLPS-Cae-1496
WBGene00011758
Q22469
CELE_T13H5.4
19
LLPS-Cae-0670
WBGene00021057
Q23195
CELE_W06B4.2
20
LLPS-Cae-1203
WBGene00012343
G5EDE4
CELE_W08E3.2
21
LLPS-Cae-0531
WBGene00021320
H2KZX7
CELE_Y34B4A.4
22
LLPS-Cae-1234
WBGene00000854
Q95YE8
cux-7
23
LLPS-Cae-1812
WBGene00000884
P52016
cyn-8
24
LLPS-Cae-1044
WBGene00000897
P20792
daf-1
25
LLPS-Cae-1466
WBGene00011892
Q22640
erh-1
26
LLPS-Cae-1911
WBGene00001496
O02254
frm-10
27
LLPS-Cae-1450
WBGene00001851
G5EGD2
hif-1
28
LLPS-Cae-2032
WBGene00017816
P91277
hrpk-1
29
LLPS-Cae-1571
WBGene00006493
Q21854
ivns-1
30
LLPS-Cae-1159
WBGene00002202
P42168
kin-19
31
LLPS-Cae-0527
WBGene00003220
O17514
mes-2
32
LLPS-Cae-0565
WBGene00003390
Q9BLB6
mog-2
33
LLPS-Cae-0445
WBGene00017778
B3GWA1
nono-1
34
LLPS-Cae-1272
WBGene00003835
Q9XVS8
nxf-2
35
LLPS-Cae-0779
WBGene00003904
Q93233
pabp-2
36
LLPS-Cae-1915
WBGene00003928
Q09583
pas-7
37
LLPS-Cae-0932
WBGene00011908
U4PRH5
pash-1
38
LLPS-Cae-1298
WBGene00006481
G5EEL2
plrg-1
39
LLPS-Cae-0909
WBGene00020423
Q10051
prp-19
40
LLPS-Cae-1418
WBGene00004188
G5ECL3
prp-21
41
LLPS-Cae-1033
WBGene00004207
Q18999
ptb-1
42
LLPS-Cae-1492
WBGene00019898
Q21755
R05G6.4
43
LLPS-Cae-1100
WBGene00010233
Q20966
rbm-17
44
LLPS-Cae-1307
WBGene00016245
Q18318
rbmx-2
45
LLPS-Cae-0626
WBGene00008683
Q19335
repo-1
46
LLPS-Cae-1096
WBGene00004385
Q21322
rnp-2
47
LLPS-Cae-1274
WBGene00004388
Q21155
rnp-5
48
LLPS-Cae-0551
WBGene00004698
Q23121
rsp-1
49
LLPS-Cae-0817
WBGene00004700
Q9NEW6
rsp-3
50
LLPS-Cae-0425
WBGene00004701
Q09511
rsp-4
51
LLPS-Cae-1733
WBGene00004705
Q9XTZ2
rsp-8
52
LLPS-Cae-1427
WBGene00004706
O62185
rsr-1
53
LLPS-Cae-0763
WBGene00013260
Q9U213
rsr-2
54
LLPS-Cae-1283
WBGene00013808
G5EF97
sfa-1
55
LLPS-Cae-0837
WBGene00011605
G5EEQ8
sftb-1
56
LLPS-Cae-0648
WBGene00012896
Q9U2G0
snrp-200
57
LLPS-Cae-0501
WBGene00006697
P90978
uaf-1
58
LLPS-Cae-1371
WBGene00002078
Q23089
xpo-1