Nicotiana attenuata      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 37 genes.  Reviewed (0 or Unreviewed (37

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Nia-0374
A4A49_03552
A0A314LC52
A4A49_03552
2
LLPS-Nia-0772
A4A49_14011
A0A314KZH8
A4A49_14011
3
LLPS-Nia-1810
A4A49_10322
A0A314KPV7
ADK-B_2
4
LLPS-Nia-1373
A4A49_10978
A0A1J6IK50
AUR1_1
5
LLPS-Nia-1718
A4A49_21609
A0A314KRV7
CDKD-1_1
6
LLPS-Nia-2649
A4A49_16105
A0A314KKB4
CID4_1
7
LLPS-Nia-2082
A4A49_10998
A0A1J6JCR8
CSTF64
8
LLPS-Nia-0315
A4A49_17144
A0A314L6D0
DCP2
9
LLPS-Nia-1238
A4A49_29037
A0A1J6K7X9
EF1A1
10
LLPS-Nia-1320
A4A49_25182
A0A1J6I5Q8
EIF4G_1
11
LLPS-Nia-2028
A4A49_23523
A0A1J6IJE3
KIN10_3
12
LLPS-Nia-0670
A4A49_00617
A0A1J6I2H1
KPNB1_4
13
LLPS-Nia-1028
A4A49_22535
A0A1J6IY61
KPYC_2
14
LLPS-Nia-1056
A4A49_06861
A0A314KUW0
LHP1_0
15
LLPS-Nia-0080
A4A49_02166
A0A314L7Z9
LSM4
16
LLPS-Nia-0818
A4A49_36833
A0A1J6IVH2
MED36A_1
17
LLPS-Nia-1578
A4A49_02749
A0A1J6IWN2
NBR1_0
18
LLPS-Nia-0736
A4A49_11574
A0A314KPA1
NRPB1
19
LLPS-Nia-0965
A4A49_21317
A0A1J6IIT6
NUG2_0
20
LLPS-Nia-2563
A4A49_21629
A0A314L1Z1
NUP96
21
LLPS-Nia-2067
A4A49_04265
A0A314LF96
NUP98A_0
22
LLPS-Nia-0029
A4A49_04086
A0A1J6JAG2
PAB8_0
23
LLPS-Nia-0360
A4A49_01579
A0A1J6J2Z0
PRMT1_1
24
LLPS-Nia-1870
A4A49_09426
A0A1J6HWL3
PUX2
25
LLPS-Nia-0161
A4A49_21370
A0A314L1G6
RBG2_1
26
LLPS-Nia-0012
A4A49_38726
A0A1J6JRV3
RBG3_4
27
LLPS-Nia-0358
A4A49_64626
A0A1J6L7R3
RPL23A_0
28
LLPS-Nia-1014
A4A49_59665
A0A314LF62
RPL5_2
29
LLPS-Nia-0264
A4A49_18729
A0A314KRX9
SUF4
30
LLPS-Nia-1420
A4A49_15074
A0A1J6IQ75
TAF15B_0
31
LLPS-Nia-1408
A4A49_19410
A0A314KS34
TOR_2
32
LLPS-Nia-0307
A4A49_00947
A0A1J6IUW2
TRN1_3
33
LLPS-Nia-1181
A4A49_31657
A0A1J6IEP3
TRN1_4
34
LLPS-Nia-2553
A4A49_06270
A0A1J6IMC2
TUBA_2
35
LLPS-Nia-1404
A4A49_34722
A0A1J6KDD4
UBP1_1
36
LLPS-Nia-0821
A4A49_29667
A0A1J6INP2
VRN1_3
37
LLPS-Nia-1130
A4A49_61925
A0A1J6KX48
XPO1_1