LLPS-Zem-0267
100192946
Integrated Annotations
▼ OVERVIEW
Status: | Unreviewed |
Protein Name: | Ribosome biogenesis regulatory protein |
Gene Name: | 100192946, ZEAMMB73_Zm00001d039611 |
Ensembl Gene: | Zm00001d039611 |
Ensembl Protein: | Zm00001d039611_P008 |
Organism: | Zea mays |
Taxa ID: | 4577 |
LLPS Type: | LLPS regulator |
▼ Classification
Condensates:
Condensate | Evidence | Orthologs |
---|---|---|
Nucleolus, P-body | Predicted from orthologs | (View) |
▼ FUNCTION
Involved in ribosomal large subunit assembly. |
▼ CROSS REFERENCE
Database | Nucleotide ID | Protein ID |
---|---|---|
Ensembl | Zm00001d039611_T008 | Zm00001d039611_P008 |
Ensembl | Zm00001d039611_T003 | Zm00001d039611_P003 |
Ensembl | Zm00001d039611_T004 | Zm00001d039611_P004 |
Ensembl | Zm00001d039611_T001 | Zm00001d039611_P001 |
Ensembl | Zm00001d039611_T002 | Zm00001d039611_P002 |
Ensembl | Zm00001d039611_T005 | Zm00001d039611_P005 |
Ensembl | Zm00001d039611_T006 | Zm00001d039611_P006 |
Ensembl | Zm00001d039611_T007 | Zm00001d039611_P007 |
Ensembl | Zm00001d039611_T010 | Zm00001d039611_P010 |
Ensembl | Zm00001d039611_T009 | Zm00001d039611_P009 |
UniProt | A0A1D6MJJ4, A0A1D6MJJ4_MAIZE | |
GeneBank | CM007649 | ONM29464.1 |
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 MAEEPAIVVA ASSSCEVDLG NLMAYDPCHH VAAAASASRE ELRQECLRKG TELAQAVADA 60 61 LFALPPTEDR DGPIVHLPPH TVRLPREKHL PKPKPPTKWE LFAKAKGITK RKKNKREWDE 120 121 QTQSWKRTYG YDRVNDDKDV PILEAKLTDE PGVDPFAQRR DEKKKRVEKQ EKSRLENLKK 180 181 AAKVGALPSY PISFVCSHIQ LAAKALPITG TKADLPKKSR KEDLESVVGM ASSATASGGK 240 241 FDEKLPGEKP PKHPGKHRKF LPVAEGKGMG SLEKQQNDKI LSSLLARNSD EPLDAITMYK 300 301 VKKEKQRRKE KNMPSKSDKL KPQKKPHKKS SKKRA 335 |
Nucleotide CDS Sequence (FASTA) |
1 ATGGCGGAGG AGCCCGCCAT CGTCGTCGCC GCCTCCTCCA GCTGCGAGGT CGACCTCGGC 60 61 AACCTCATGG CGTACGACCC GTGTCACCAC GTCGCAGCCG CCGCCTCCGC CTCCAGGGAG 120 121 GAGCTGAGGC AGGAGTGCCT GCGGAAGGGG ACGGAGCTGG CGCAGGCGGT GGCCGACGCC 180 181 CTCTTCGCGC TGCCGCCCAC CGAGGACCGC GACGGCCCCA TCGTCCACCT CCCGCCACAC 240 241 ACCGTTCGAC TCCCGCGCGA GAAGCATCTA CCCAAGCCCA AGCCACCGAC CAAGTGGGAG 300 301 CTGTTTGCAA AGGCGAAAGG AATTACCAAG CGCAAGAAGA ACAAGCGTGA GTGGGACGAG 360 361 CAAACTCAAT CCTGGAAGCG GACTTATGGC TATGACCGTG TAAATGATGA TAAAGACGTT 420 421 CCGATTCTTG AAGCCAAACT GACTGACGAG CCTGGTGTTG ATCCCTTTGC ACAGAGAAGG 480 481 GATGAGAAGA AGAAGAGGGT TGAAAAGCAA GAAAAAAGCA GATTAGAGAA TTTAAAGAAA 540 541 GCTGCAAAGG TTGGTGCTTT GCCAAGCTAC CCAATATCTT TTGTATGCAG TCATATACAG 600 601 CTTGCTGCGA AGGCCTTGCC CATCACAGGA ACTAAAGCTG ACCTTCCAAA AAAATCTAGA 660 661 AAAGAGGATC TTGAGAGTGT TGTTGGCATG GCTTCGTCAG CAACAGCAAG CGGTGGGAAG 720 721 TTTGACGAGA AGTTGCCTGG CGAGAAACCT CCAAAGCACC CTGGCAAACA TAGAAAGTTC 780 781 CTCCCAGTTG CTGAGGGGAA GGGAATGGGC AGCCTGGAGA AACAGCAGAA TGACAAAATC 840 841 CTGAGCTCTC TACTTGCCAG AAACTCTGAT GAACCGCTTG ATGCAATTAC AATGTACAAG 900 901 GTGAAAAAGG AAAAGCAGAG AAGGAAAGAG AAAAATATGC CATCAAAATC TGATAAGCTT 960 961 AAGCCCCAGA AGAAACCCCA CAAGAAATCA TCGAAGAAAA GGGCTTAG 1008 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Nucleolus | |
Cellular Component | Preribosome, large subunit precursor | |
Biological Process | Endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | |
Biological Process | Ribosomal large subunit biogenesis | |
Biological Process | Ribosomal large subunit export from nucleus |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Sob-0453 | Sorghum bicolor | 91.41 | 2e-167 | 477 |
LLPS-Sei-0198 | Setaria italica | 87.63 | 6e-163 | 465 |
LLPS-Orbr-0240 | Oryza brachyantha | 81.43 | 8e-142 | 411 |
LLPS-Org-0205 | Oryza glaberrima | 81.03 | 4e-151 | 435 |
LLPS-Orp-0029 | Oryza punctata | 80.97 | 3e-149 | 431 |
LLPS-Ors-0506 | Oryza sativa | 80.69 | 2e-149 | 431 |
LLPS-Lep-0807 | Leersia perrieri | 80.41 | 4e-149 | 430 |
LLPS-Brd-0630 | Brachypodium distachyon | 78.89 | 3e-145 | 421 |
LLPS-Tra-0563 | Triticum aestivum | 77.16 | 2e-144 | 419 |
LLPS-Hov-2013 | Hordeum vulgare | 76.29 | 1e-140 | 410 |
LLPS-Orb-0851 | Oryza barthii | 74.6 | 1e-145 | 422 |
LLPS-Orgl-0111 | Oryza glumaepatula | 74.29 | 1e-144 | 420 |
LLPS-Orni-0203 | Oryza nivara | 74.29 | 1e-144 | 420 |
LLPS-Orr-0127 | Oryza rufipogon | 73.97 | 1e-143 | 417 |
LLPS-Tru-0461 | Triticum urartu | 69.14 | 1e-99 | 302 |
LLPS-Ori-0357 | Oryza indica | 67.93 | 7e-114 | 339 |
LLPS-Mua-0953 | Musa acuminata | 67.63 | 1e-117 | 349 |
LLPS-Dac-0007 | Daucus carota | 67.01 | 3e-114 | 342 |
LLPS-Viv-2302 | Vitis vinifera | 66.78 | 7e-113 | 338 |
LLPS-Nia-0695 | Nicotiana attenuata | 66.67 | 4e-109 | 328 |
LLPS-Amt-1110 | Amborella trichopoda | 66.32 | 1e-113 | 340 |
LLPS-Sol-0774 | Solanum lycopersicum | 65.75 | 2e-107 | 324 |
LLPS-Mae-0115 | Manihot esculenta | 65.52 | 6e-110 | 331 |
LLPS-Sot-0378 | Solanum tuberosum | 65.41 | 4e-106 | 321 |
LLPS-Coc-0389 | Corchorus capsularis | 65.28 | 2e-103 | 314 |
LLPS-Pot-0934 | Populus trichocarpa | 65.16 | 4e-106 | 322 |
LLPS-Gor-0408 | Gossypium raimondii | 64.46 | 1e-107 | 325 |
LLPS-Hea-1074 | Helianthus annuus | 64.11 | 8e-112 | 335 |
LLPS-Cus-0172 | Cucumis sativus | 63.76 | 2e-101 | 308 |
LLPS-Thc-0571 | Theobroma cacao | 63.19 | 2e-106 | 322 |
LLPS-Prp-0746 | Prunus persica | 63.1 | 1e-110 | 332 |
LLPS-Glm-2118 | Glycine max | 61.67 | 3e-101 | 308 |
LLPS-Phv-1274 | Phaseolus vulgaris | 61.32 | 3e-105 | 319 |
LLPS-Via-0187 | Vigna angularis | 60.98 | 6e-105 | 318 |
LLPS-Arl-0694 | Arabidopsis lyrata | 60.63 | 4e-102 | 310 |
LLPS-Brr-0877 | Brassica rapa | 60.28 | 2e-98 | 301 |
LLPS-Bro-0465 | Brassica oleracea | 59.93 | 9e-97 | 296 |
LLPS-Brn-1249 | Brassica napus | 59.93 | 7e-97 | 296 |
LLPS-Art-0249 | Arabidopsis thaliana | 59.58 | 7e-98 | 299 |
LLPS-Met-1162 | Medicago truncatula | 58.22 | 9e-100 | 305 |
LLPS-Sem-0198 | Selaginella moellendorffii | 54.76 | 3e-75 | 239 |
LLPS-Vir-0170 | Vigna radiata | 52.61 | 6e-73 | 235 |
LLPS-Php-0323 | Physcomitrella patens | 48.49 | 2e-65 | 217 |
LLPS-Pytr-0248 | Pyrenophora triticirepentis | 42.19 | 8e-06 | 50.1 |
LLPS-Pyt-0387 | Pyrenophora teres | 42.19 | 6e-06 | 50.8 |
LLPS-Nol-1247 | Nomascus leucogenys | 41.71 | 3e-24 | 105 |
LLPS-Dio-1154 | Dipodomys ordii | 41.21 | 3e-22 | 98.2 |
LLPS-Cae-0027 | Caenorhabditis elegans | 40.89 | 3e-30 | 122 |
LLPS-Dar-0017 | Danio rerio | 39.01 | 3e-17 | 84.7 |
LLPS-Rhb-0740 | Rhinopithecus bieti | 38.61 | 8e-30 | 122 |
LLPS-Spr-0396 | Sporisorium reilianum | 38.42 | 5e-25 | 107 |
LLPS-Cogr-0371 | Colletotrichum graminicola | 38.35 | 6e-14 | 73.2 |
LLPS-Mam-1935 | Macaca mulatta | 38.22 | 8e-29 | 119 |
LLPS-Ict-1859 | Ictidomys tridecemlineatus | 38.22 | 7e-29 | 119 |
LLPS-Man-1024 | Macaca nemestrina | 38.22 | 8e-29 | 119 |
LLPS-Ere-0415 | Erinaceus europaeus | 38.22 | 2e-28 | 117 |
LLPS-Mal-1213 | Mandrillus leucophaeus | 38.22 | 1e-28 | 118 |
LLPS-Maf-2003 | Macaca fascicularis | 38.22 | 8e-29 | 119 |
LLPS-Cea-2451 | Cercocebus atys | 38.22 | 1e-28 | 118 |
LLPS-Aon-0927 | Aotus nancymaae | 38.22 | 6e-29 | 119 |
LLPS-Gog-1039 | Gorilla gorilla | 38.22 | 3e-29 | 120 |
LLPS-Caj-1613 | Callithrix jacchus | 38.22 | 5e-29 | 119 |
LLPS-Chr-0150 | Chlamydomonas reinhardtii | 38.16 | 1e-38 | 147 |
LLPS-Pof-0870 | Poecilia formosa | 38.13 | 1e-22 | 100 |
LLPS-Pap-1800 | Pan paniscus | 37.84 | 6e-29 | 119 |
LLPS-Hos-0590 | Homo sapiens | 37.84 | 1e-28 | 118 |
LLPS-Chs-0258 | Chlorocebus sabaeus | 37.84 | 3e-28 | 117 |
LLPS-Gaga-0379 | Gallus gallus | 37.78 | 4e-11 | 67.8 |
LLPS-Crn-0932 | Cryptococcus neoformans | 37.57 | 8e-24 | 103 |
LLPS-Poa-1495 | Pongo abelii | 37.5 | 7e-30 | 120 |
LLPS-Eqc-0087 | Equus caballus | 37.45 | 3e-28 | 117 |
LLPS-Cap-0149 | Cavia porcellus | 37.45 | 3e-28 | 117 |
LLPS-Pat-0191 | Pan troglodytes | 37.45 | 2e-28 | 118 |
LLPS-Loa-1644 | Loxodonta africana | 37.45 | 3e-28 | 117 |
LLPS-Gaa-0457 | Gasterosteus aculeatus | 37.45 | 4e-25 | 107 |
LLPS-Mea-0020 | Mesocricetus auratus | 37.45 | 6e-28 | 116 |
LLPS-Sus-1221 | Sus scrofa | 37.45 | 1e-28 | 118 |
LLPS-Scc-0565 | Schizosaccharomyces cryophilus | 37.4 | 6e-17 | 81.3 |
LLPS-Asm-1791 | Astyanax mexicanus | 37.21 | 4e-28 | 117 |
LLPS-Mod-0291 | Monodelphis domestica | 37.14 | 9e-31 | 124 |
LLPS-Ten-0488 | Tetraodon nigroviridis | 37.07 | 4e-18 | 87.4 |
LLPS-Fec-0755 | Felis catus | 37.07 | 5e-28 | 116 |
LLPS-Bot-0191 | Bos taurus | 37.07 | 2e-28 | 117 |
LLPS-Ran-1208 | Rattus norvegicus | 37.07 | 9e-28 | 115 |
LLPS-Mum-1927 | Mus musculus | 37.07 | 5e-28 | 116 |
LLPS-Asg-0559 | Ashbya gossypii | 37.02 | 3e-16 | 80.1 |
LLPS-Beb-0004 | Beauveria bassiana | 36.84 | 3e-15 | 77.4 |
LLPS-Caf-0070 | Canis familiaris | 36.82 | 7e-29 | 119 |
LLPS-Osl-0642 | Ostreococcus lucimarinus | 36.82 | 1e-25 | 108 |
LLPS-Otg-0007 | Otolemur garnettii | 36.68 | 2e-27 | 115 |
LLPS-Lac-0864 | Latimeria chalumnae | 36.62 | 1e-28 | 117 |
LLPS-Tum-0693 | Tuber melanosporum | 36.57 | 3e-15 | 77.0 |
LLPS-Orc-0124 | Oryctolagus cuniculus | 36.52 | 4e-28 | 117 |
LLPS-Mup-1877 | Mustela putorius furo | 36.29 | 9e-28 | 115 |
LLPS-Trr-0929 | Trichoderma reesei | 36.22 | 1e-16 | 80.9 |
LLPS-Usm-0006 | Ustilago maydis | 36.1 | 9e-25 | 107 |
LLPS-Icp-0880 | Ictalurus punctatus | 35.93 | 5e-27 | 113 |
LLPS-Scj-0021 | Schizosaccharomyces japonicus | 35.88 | 2e-13 | 71.6 |
LLPS-Ved-0251 | Verticillium dahliae | 35.82 | 8e-06 | 49.7 |
LLPS-Scm-1799 | Scophthalmus maximus | 35.74 | 1e-15 | 80.9 |
LLPS-Leo-0555 | Lepisosteus oculatus | 35.71 | 1e-26 | 112 |
LLPS-Trv-0094 | Trichoderma virens | 35.68 | 7e-18 | 84.3 |
LLPS-Tar-0838 | Takifugu rubripes | 35.59 | 6e-16 | 81.3 |
LLPS-Lem-0236 | Leptosphaeria maculans | 35.56 | 3e-10 | 63.5 |
LLPS-Chc-0195 | Chondrus crispus | 35.53 | 6e-27 | 112 |
LLPS-Mao-0345 | Magnaporthe oryzae | 35.46 | 7e-11 | 64.7 |
LLPS-Sac-1299 | Saccharomyces cerevisiae | 35.16 | 9e-14 | 73.2 |
LLPS-Cis-0900 | Ciona savignyi | 35.13 | 8e-31 | 124 |
LLPS-Scf-0153 | Scleropages formosus | 34.97 | 4e-12 | 69.7 |
LLPS-Gag-0811 | Gaeumannomyces graminis | 34.46 | 5e-13 | 70.9 |
LLPS-Pug-0231 | Puccinia graminis | 34.29 | 2e-23 | 102 |
LLPS-Cii-0127 | Ciona intestinalis | 34.28 | 1e-28 | 117 |
LLPS-Fuo-0425 | Fusarium oxysporum | 34.23 | 2e-16 | 80.1 |
LLPS-Fuv-0539 | Fusarium verticillioides | 34.23 | 2e-16 | 80.1 |
LLPS-Gas-0345 | Galdieria sulphuraria | 34.08 | 1e-18 | 87.4 |
LLPS-Scp-0873 | Schizosaccharomyces pombe | 33.85 | 5e-12 | 67.4 |
LLPS-Orn-0781 | Oreochromis niloticus | 33.81 | 8e-25 | 107 |
LLPS-Paa-1878 | Papio anubis | 33.72 | 3e-10 | 64.7 |
LLPS-Ora-1429 | Ornithorhynchus anatinus | 33.7 | 3e-22 | 99.4 |
LLPS-Cog-0355 | Colletotrichum gloeosporioides | 33.51 | 8e-17 | 81.3 |
LLPS-Map-0448 | Magnaporthe poae | 33.33 | 7e-12 | 67.4 |
LLPS-Put-0136 | Puccinia triticina | 33.21 | 4e-21 | 96.7 |
LLPS-Zyt-0150 | Zymoseptoria tritici | 33.08 | 5e-07 | 55.5 |
LLPS-Drm-1025 | Drosophila melanogaster | 32.91 | 3e-17 | 85.1 |
LLPS-Coo-0763 | Colletotrichum orbiculare | 32.61 | 2e-14 | 74.7 |
LLPS-Ast-0106 | Aspergillus terreus | 32.32 | 2e-07 | 55.1 |
LLPS-Phn-0106 | Phaeosphaeria nodorum | 32.03 | 1e-06 | 52.4 |
LLPS-Nec-0704 | Neurospora crassa | 32.0 | 3e-12 | 68.6 |
LLPS-Kop-0469 | Komagataella pastoris | 31.87 | 2e-11 | 66.2 |
LLPS-Miv-0059 | Microbotryum violaceum | 31.8 | 3e-20 | 93.6 |
LLPS-Mel-0285 | Melampsora laricipopulina | 30.83 | 3e-19 | 91.3 |
LLPS-Fus-0548 | Fusarium solani | 30.81 | 3e-15 | 77.4 |
LLPS-Cym-0300 | Cyanidioschyzon merolae | 30.04 | 1e-14 | 76.3 |
LLPS-Yal-0663 | Yarrowia lipolytica | 29.9 | 1e-11 | 67.0 |
LLPS-Asc-0537 | Aspergillus clavatus | 29.7 | 7e-14 | 73.6 |
LLPS-Abg-0603 | Absidia glauca | 29.51 | 3e-18 | 87.4 |
LLPS-Aso-0569 | Aspergillus oryzae | 29.5 | 7e-06 | 50.4 |
LLPS-Asf-0463 | Aspergillus flavus | 29.5 | 7e-06 | 50.4 |
LLPS-Blg-0744 | Blumeria graminis | 28.95 | 2e-09 | 60.8 |