LLPS-Sot-0378
102593560
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | Ribosome biogenesis regulatory protein |
| Gene Name: | 102593560 |
| Ensembl Gene: | PGSC0003DMG400018964 |
| Ensembl Protein: | PGSC0003DMT400048813 |
| Organism: | Solanum tuberosum |
| Taxa ID: | 4113 |
| LLPS Type: | LLPS regulator |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nucleolus, P-body | Predicted from orthologs | (View) |
▼ FUNCTION
| Involved in ribosomal large subunit assembly. |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | PGSC0003DMT400048813 | PGSC0003DMT400048813 |
| UniProt | M1BMW6, M1BMW6_SOLTU | |
| RefSeq | XM_006364831.1 | XP_006364893.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MEMAQESYEL DVGNLMASYP HHNFASTPSS REELVKECLQ EGTKLVQAIA DALFNLPSTE 60 61 SPDGPLVQLP QPTTRLPREK PLPRPKPPTK WEVFAKKKGI QKRKKDKVVF DDQTGSWKRR 120 121 HGYDRVNDDK DVPIIDAKAT DEPGQDPFAK RQEEKKKRVE KQEKNRYSNL KEAAKAGALP 180 181 SHIQLAATAL PITGSQAASR KISKDELGNV AGMAANATAS GGKFDKKLPG EKPPKHDKKY 240 241 RKFLPVAEGS GMGSLERQQT EKVLNKFMAK NSHEILNVQK AVNMYNVKKD KKGRSQGGKS 300 301 SSADNKLKAR KSPYKKASTK GPSNKGKSK 329 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGAGATGG CTCAAGAATC ATATGAATTG GATGTGGGTA ATCTTATGGC TTCATACCCA 60 61 CATCACAACT TTGCTTCTAC ACCTTCTTCC AGGGAGGAGT TGGTGAAAGA GTGTCTACAG 120 121 GAGGGGACCA AGTTAGTGCA AGCTATTGCA GATGCTCTCT TCAACTTACC TTCAACAGAA 180 181 AGCCCTGATG GTCCTCTAGT CCAGCTGCCT CAACCAACTA CGAGATTGCC TAGAGAGAAG 240 241 CCTCTTCCAA GGCCTAAACC TCCAACAAAA TGGGAAGTGT TTGCCAAGAA GAAAGGTATA 300 301 CAAAAACGTA AGAAAGACAA GGTGGTGTTT GATGACCAAA CTGGTTCATG GAAGCGCAGA 360 361 CATGGCTATG ATCGTGTAAA TGATGACAAA GATGTGCCAA TCATTGATGC CAAGGCAACT 420 421 GATGAGCCTG GTCAAGATCC TTTTGCTAAG AGACAAGAAG AAAAGAAGAA AAGAGTAGAA 480 481 AAACAAGAGA AAAACCGATA TAGTAACTTG AAGGAAGCTG CAAAAGCTGG TGCCTTGCCA 540 541 AGTCACATTC AGCTTGCTGC CACAGCACTG CCTATAACAG GATCACAAGC TGCATCAAGG 600 601 AAAATTAGCA AGGATGAACT CGGAAATGTC GCTGGAATGG CAGCAAATGC AACAGCTAGT 660 661 GGCGGAAAAT TTGACAAGAA GTTGCCTGGT GAAAAGCCCC CAAAACATGA CAAGAAGTAT 720 721 CGAAAGTTCC TACCAGTTGC TGAAGGATCA GGAATGGGAT CCTTAGAGAG ACAACAAACC 780 781 GAAAAGGTCC TAAACAAATT CATGGCCAAG AACTCCCATG AGATACTCAA TGTGCAAAAG 840 841 GCTGTTAACA TGTACAATGT GAAAAAAGAT AAGAAAGGAA GAAGCCAAGG AGGGAAGTCA 900 901 TCGTCAGCCG ATAACAAATT GAAGGCAAGG AAGTCACCTT ACAAGAAAGC ATCAACAAAA 960 961 GGGCCTTCAA ATAAAGGAAA ATCTAAGTGA 990 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Nucleus | |
Biological Process | Ribosome biogenesis |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Sol-0774 | Solanum lycopersicum | 98.18 | 0.0 | 526 |
| LLPS-Nia-0695 | Nicotiana attenuata | 90.83 | 2e-167 | 477 |
| LLPS-Dac-0007 | Daucus carota | 78.75 | 3e-126 | 372 |
| LLPS-Viv-2302 | Vitis vinifera | 75.44 | 2e-119 | 354 |
| LLPS-Coc-0389 | Corchorus capsularis | 75.35 | 9e-122 | 361 |
| LLPS-Hea-1074 | Helianthus annuus | 74.82 | 3e-122 | 361 |
| LLPS-Cus-0172 | Cucumis sativus | 73.96 | 2e-121 | 360 |
| LLPS-Gor-0408 | Gossypium raimondii | 73.25 | 4e-128 | 377 |
| LLPS-Prp-0746 | Prunus persica | 73.03 | 6e-121 | 358 |
| LLPS-Via-0187 | Vigna angularis | 72.79 | 7e-118 | 351 |
| LLPS-Glm-2504 | Glycine max | 72.51 | 1e-116 | 347 |
| LLPS-Pot-0934 | Populus trichocarpa | 72.18 | 4e-117 | 350 |
| LLPS-Mua-0953 | Musa acuminata | 72.16 | 1e-108 | 326 |
| LLPS-Phv-1274 | Phaseolus vulgaris | 72.08 | 1e-117 | 350 |
| LLPS-Brr-0877 | Brassica rapa | 71.93 | 2e-111 | 334 |
| LLPS-Bro-0465 | Brassica oleracea | 70.38 | 2e-109 | 328 |
| LLPS-Brn-1249 | Brassica napus | 70.38 | 5e-110 | 330 |
| LLPS-Thc-0571 | Theobroma cacao | 70.09 | 4e-121 | 359 |
| LLPS-Amt-1110 | Amborella trichopoda | 69.53 | 1e-106 | 321 |
| LLPS-Sei-0198 | Setaria italica | 69.15 | 2e-102 | 311 |
| LLPS-Tru-0461 | Triticum urartu | 68.72 | 7e-67 | 218 |
| LLPS-Brd-0630 | Brachypodium distachyon | 68.44 | 7e-100 | 305 |
| LLPS-Mae-0115 | Manihot esculenta | 68.31 | 6e-118 | 351 |
| LLPS-Orbr-0240 | Oryza brachyantha | 68.27 | 5e-94 | 289 |
| LLPS-Arl-0694 | Arabidopsis lyrata | 67.8 | 2e-113 | 339 |
| LLPS-Sob-0453 | Sorghum bicolor | 67.61 | 9e-97 | 296 |
| LLPS-Org-0205 | Oryza glaberrima | 67.49 | 5e-100 | 305 |
| LLPS-Orp-0029 | Oryza punctata | 67.38 | 2e-100 | 306 |
| LLPS-Ors-0506 | Oryza sativa | 67.02 | 1e-100 | 306 |
| LLPS-Tra-0563 | Triticum aestivum | 66.78 | 6e-95 | 292 |
| LLPS-Art-0249 | Arabidopsis thaliana | 66.36 | 4e-108 | 325 |
| LLPS-Lep-0807 | Leersia perrieri | 66.2 | 9e-95 | 291 |
| LLPS-Met-1162 | Medicago truncatula | 65.94 | 3e-115 | 343 |
| LLPS-Hov-1459 | Hordeum vulgare | 65.79 | 3e-97 | 298 |
| LLPS-Zem-0267 | Zea mays | 65.31 | 8e-93 | 286 |
| LLPS-Orb-0851 | Oryza barthii | 61.69 | 8e-95 | 292 |
| LLPS-Orr-0127 | Oryza rufipogon | 61.36 | 2e-93 | 289 |
| LLPS-Orni-0203 | Oryza nivara | 61.36 | 7e-94 | 290 |
| LLPS-Orgl-0111 | Oryza glumaepatula | 61.36 | 1e-94 | 292 |
| LLPS-Vir-0170 | Vigna radiata | 61.04 | 5e-89 | 276 |
| LLPS-Sem-0198 | Selaginella moellendorffii | 54.98 | 2e-64 | 210 |
| LLPS-Ori-0357 | Oryza indica | 54.96 | 5e-77 | 244 |
| LLPS-Php-0323 | Physcomitrella patens | 53.15 | 3e-66 | 219 |
| LLPS-Nol-1247 | Nomascus leucogenys | 45.55 | 4e-16 | 81.3 |
| LLPS-Dio-1154 | Dipodomys ordii | 44.87 | 3e-17 | 84.0 |
| LLPS-Poa-1495 | Pongo abelii | 41.74 | 3e-21 | 95.5 |
| LLPS-Ict-1859 | Ictidomys tridecemlineatus | 41.74 | 2e-20 | 94.4 |
| LLPS-Aon-0927 | Aotus nancymaae | 41.74 | 2e-20 | 94.0 |
| LLPS-Cea-2451 | Cercocebus atys | 41.74 | 2e-20 | 94.0 |
| LLPS-Caj-1613 | Callithrix jacchus | 41.74 | 2e-20 | 94.4 |
| LLPS-Gog-1039 | Gorilla gorilla | 41.74 | 5e-21 | 95.9 |
| LLPS-Mal-1213 | Mandrillus leucophaeus | 41.74 | 2e-20 | 94.0 |
| LLPS-Man-1024 | Macaca nemestrina | 41.32 | 2e-19 | 91.3 |
| LLPS-Hos-0590 | Homo sapiens | 41.32 | 8e-20 | 92.4 |
| LLPS-Rhb-0740 | Rhinopithecus bieti | 41.32 | 2e-19 | 91.3 |
| LLPS-Mam-1935 | Macaca mulatta | 41.32 | 2e-19 | 91.3 |
| LLPS-Caf-0070 | Canis familiaris | 41.32 | 1e-20 | 94.7 |
| LLPS-Maf-2003 | Macaca fascicularis | 41.32 | 2e-19 | 91.3 |
| LLPS-Chs-0258 | Chlorocebus sabaeus | 41.32 | 8e-20 | 92.4 |
| LLPS-Pap-1800 | Pan paniscus | 40.91 | 1e-19 | 92.0 |
| LLPS-Mea-0020 | Mesocricetus auratus | 40.74 | 7e-20 | 92.4 |
| LLPS-Mum-1927 | Mus musculus | 40.74 | 2e-20 | 94.0 |
| LLPS-Ran-1208 | Rattus norvegicus | 40.74 | 2e-20 | 94.0 |
| LLPS-Ere-0415 | Erinaceus europaeus | 40.66 | 1e-19 | 92.0 |
| LLPS-Pat-0191 | Pan troglodytes | 40.5 | 4e-19 | 90.5 |
| LLPS-Leo-0555 | Lepisosteus oculatus | 40.29 | 5e-21 | 95.9 |
| LLPS-Chr-0150 | Chlamydomonas reinhardtii | 40.27 | 6e-33 | 131 |
| LLPS-Loa-1644 | Loxodonta africana | 40.25 | 1e-20 | 94.7 |
| LLPS-Eqc-0087 | Equus caballus | 40.25 | 4e-20 | 92.8 |
| LLPS-Sus-1221 | Sus scrofa | 40.25 | 8e-21 | 95.1 |
| LLPS-Bot-0191 | Bos taurus | 39.83 | 9e-21 | 95.1 |
| LLPS-Fec-0755 | Felis catus | 39.42 | 3e-20 | 93.6 |
| LLPS-Pof-0870 | Poecilia formosa | 39.3 | 6e-22 | 98.2 |
| LLPS-Cap-0149 | Cavia porcellus | 39.26 | 1e-19 | 92.0 |
| LLPS-Mup-1877 | Mustela putorius furo | 39.26 | 5e-19 | 90.1 |
| LLPS-Asm-1791 | Astyanax mexicanus | 39.21 | 1e-22 | 100 |
| LLPS-Orc-0124 | Oryctolagus cuniculus | 38.71 | 3e-20 | 94.0 |
| LLPS-Mod-0291 | Monodelphis domestica | 38.59 | 6e-18 | 87.0 |
| LLPS-Dar-0017 | Danio rerio | 38.57 | 2e-19 | 90.9 |
| LLPS-Lac-0864 | Latimeria chalumnae | 38.49 | 7e-20 | 92.0 |
| LLPS-Scm-1799 | Scophthalmus maximus | 38.13 | 1e-20 | 94.7 |
| LLPS-Otg-0007 | Otolemur garnettii | 37.99 | 6e-18 | 87.0 |
| LLPS-Icp-0880 | Ictalurus punctatus | 37.99 | 3e-19 | 90.5 |
| LLPS-Cae-0027 | Caenorhabditis elegans | 37.82 | 2e-08 | 58.9 |
| LLPS-Ten-0488 | Tetraodon nigroviridis | 37.77 | 3e-20 | 93.2 |
| LLPS-Orn-0781 | Oreochromis niloticus | 37.41 | 2e-18 | 88.2 |
| LLPS-Gaga-0379 | Gallus gallus | 37.37 | 2e-13 | 74.3 |
| LLPS-Osl-0642 | Ostreococcus lucimarinus | 37.36 | 5e-21 | 95.1 |
| LLPS-Cii-0127 | Ciona intestinalis | 36.96 | 2e-15 | 79.3 |
| LLPS-Usm-0006 | Ustilago maydis | 36.49 | 1e-10 | 66.2 |
| LLPS-Crn-0932 | Cryptococcus neoformans | 36.43 | 4e-07 | 55.1 |
| LLPS-Cis-0900 | Ciona savignyi | 36.1 | 5e-14 | 75.5 |
| LLPS-Tar-0838 | Takifugu rubripes | 35.97 | 6e-19 | 89.4 |
| LLPS-Chc-0195 | Chondrus crispus | 35.47 | 3e-15 | 77.8 |
| LLPS-Ora-1429 | Ornithorhynchus anatinus | 35.13 | 6e-14 | 75.9 |
| LLPS-Gaa-0457 | Gasterosteus aculeatus | 34.94 | 3e-17 | 85.1 |
| LLPS-Spr-0396 | Sporisorium reilianum | 34.59 | 2e-06 | 52.8 |