DrLLPS - Data resource of LLPS

LLPS-Orb-2108

Integrated Annotations

▼ OVERVIEW


Status:	Unreviewed
Protein Name:	DNA-directed RNA polymerase subunit
Ensembl Gene:	OBART02G27520
Ensembl Protein:	OBART02G27520.1
Organism:	Oryza barthii
Taxa ID:	65489
LLPS Type:	Others

▼ PROPERTY

——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:

Condensate	Evidence	Orthologs
Stress granule	Predicted from orthologs	(View)

Organism	DrLLPS ID	UniProt ID	LLPS type	Condensate	Identity	E-value	Score
Saccharomyces cerevisiae	LLPS-Sac-0107	Q04307	Client	Stress granule	50.34	0.0	713

▼ FUNCTION

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

▼ CROSS REFERENCE

Database	Nucleotide ID	Protein ID
Ensembl	OBART02G27520.1	OBART02G27520.1
UniProt		A0A0D3F8S2, A0A0D3F8S2_9ORYZ

▼ SEQUENCE

Protein Sequence (FASTA)
1 MEFCPGCGML LQIQPATGGN RLRFYCPTCP YVCPIVKKAR LVKKEVEPIF SDSDAMKNAP 60 61 KTTTTCPRCQ NGEAYYRQMQ IRSADEPMST FYKCCREECQ FDWRED 106
Nucleotide CDS Sequence (FASTA)
1 ATGGAGTTCT GCCCGGGGTG CGGGATGCTG CTGCAGATCC AGCCGGCCAC CGGCGGGAAC 60 61 CGCCTGCGCT TCTACTGCCC CACCTGCCCC TACGTCTGCC CCATCGTGAA GAAGGCGAGA 120 121 CTGGTGAAGA AGGAGGTGGA GCCCATCTTC AGCGACAGCG ACGCCATGAA GAATGCCCCT 180 181 AAGACCACCA CTACATGCCC AAGGTGCCAA AATGGAGAAG CATACTACAG GCAGATGCAG 240 241 ATTCGATCAG CTGATGAGCC AATGTCTACA TTTTACAAGT GTTGCAGAGA AGAATGCCAA 300 301 TTTGATTGGA GGGAGGACTG A 321

▼ KEYWORD

ID	Family
KW-0181	Complete proteome
KW-0240	DNA-directed RNA polymerase
KW-0479	Metal-binding
KW-0539	Nucleus
KW-1185	Reference proteome
KW-0804	Transcription
KW-0862	Zinc
KW-0863	Zinc-finger

▼ GENE ONTOLOGY

ID	Classification	Description
GO:0005730	Cellular Component	Nucleolus
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity
GO:0003676	Molecular Function	Nucleic acid binding
GO:0008270	Molecular Function	Zinc ion binding
GO:0006351	Biological Process	Transcription, DNA-templated
GO:0042779	Biological Process	TRNA 3'-trailer cleavage

▼ ORTHOLOGY

DrLLPS ID	Organism	Identity	E-value	Score
LLPS-Orni-1376	Oryza nivara	100.0	3e-74	222
LLPS-Ori-2227	Oryza indica	100.0	3e-74	222
LLPS-Orr-0491	Oryza rufipogon	100.0	5e-75	228
LLPS-Orm-0337	Oryza meridionalis	100.0	3e-74	222
LLPS-Ors-2052	Oryza sativa	96.36	3e-72	217
LLPS-Org-1377	Oryza glaberrima	96.36	3e-72	217
LLPS-Orp-0606	Oryza punctata	95.28	2e-70	212
LLPS-Orgl-2302	Oryza glumaepatula	80.3	5e-69	209
LLPS-Orbr-1137	Oryza brachyantha	80.0	7e-60	186
LLPS-Mua-1037	Musa acuminata	72.73	2e-53	169
LLPS-Sei-0593	Setaria italica	72.73	3e-56	176
LLPS-Sob-0251	Sorghum bicolor	71.82	7e-54	170
LLPS-Zem-1490	Zea mays	71.82	8e-54	170
LLPS-Amt-2016	Amborella trichopoda	61.82	9e-39	132
LLPS-Viv-1962	Vitis vinifera	58.04	3e-36	125
LLPS-Cus-2007	Cucumis sativus	55.36	4e-35	122
LLPS-Mae-1187	Manihot esculenta	53.57	1e-34	121
LLPS-Phv-0759	Phaseolus vulgaris	53.57	8e-32	114
LLPS-Glm-2146	Glycine max	51.35	1e-31	113
LLPS-Nia-2036	Nicotiana attenuata	50.89	6e-29	106
LLPS-Pot-0255	Populus trichocarpa	50.89	2e-31	113
LLPS-Hea-1923	Helianthus annuus	50.44	2e-25	99.8
LLPS-Thc-1138	Theobroma cacao	50.0	6e-29	107
LLPS-Dac-1902	Daucus carota	49.11	8e-30	118
LLPS-Sol-1508	Solanum lycopersicum	49.11	1e-27	103
LLPS-Art-2620	Arabidopsis thaliana	49.11	4e-27	102
LLPS-Gor-1852	Gossypium raimondii	49.11	7e-31	111
LLPS-Coc-1705	Corchorus capsularis	49.11	3e-30	110
LLPS-Lem-0347	Leptosphaeria maculans	48.45	1e-17	77.4
LLPS-Arl-1571	Arabidopsis lyrata	48.21	5e-26	99.0
LLPS-Sot-0996	Solanum tuberosum	48.21	3e-27	102
LLPS-Php-2030	Physcomitrella patens	48.18	6e-31	112
LLPS-Pyt-0402	Pyrenophora teres	47.19	3e-17	76.3
LLPS-Crn-0550	Cryptococcus neoformans	46.36	1e-24	95.5
LLPS-Nec-0992	Neurospora crassa	45.95	1e-17	77.4
LLPS-Prp-2409	Prunus persica	45.87	5e-23	91.7
LLPS-Sem-1556	Selaginella moellendorffii	45.45	5e-27	101
LLPS-Ora-2590	Ornithorhynchus anatinus	45.16	3e-13	65.1
LLPS-Fud-0358	Fukomys damarensis	44.95	1e-23	92.8
LLPS-Cii-1170	Ciona intestinalis	44.95	3e-24	94.4
LLPS-Mal-1254	Mandrillus leucophaeus	44.95	1e-23	93.2
LLPS-Pof-3455	Poecilia formosa	44.95	8e-25	95.9
LLPS-Cap-4319	Cavia porcellus	44.95	1e-23	93.2
LLPS-Drm-1193	Drosophila melanogaster	44.86	1e-23	93.2
LLPS-Brr-2329	Brassica rapa	44.64	3e-21	86.7
LLPS-Pytr-0419	Pyrenophora triticirepentis	44.57	6e-17	75.5
LLPS-Gog-0955	Gorilla gorilla	44.04	3e-23	92.0
LLPS-Caj-4162	Callithrix jacchus	44.04	3e-23	92.0
LLPS-Icp-4043	Ictalurus punctatus	44.04	6e-23	91.3
LLPS-Mum-4923	Mus musculus	44.04	3e-23	92.0
LLPS-Maf-4678	Macaca fascicularis	44.04	3e-23	92.0
LLPS-Chs-0174	Chlorocebus sabaeus	44.04	3e-23	92.0
LLPS-Orl-0436	Oryzias latipes	44.04	2e-24	95.5
LLPS-Sus-2520	Sus scrofa	44.04	3e-23	92.0
LLPS-Cea-3977	Cercocebus atys	44.04	3e-23	92.0
LLPS-Aon-4787	Aotus nancymaae	44.04	3e-23	92.0
LLPS-Ran-2976	Rattus norvegicus	44.04	3e-23	92.0
LLPS-Paa-3767	Papio anubis	44.04	3e-23	92.0
LLPS-Myl-4342	Myotis lucifugus	44.04	3e-23	92.0
LLPS-Aim-1058	Ailuropoda melanoleuca	44.04	4e-23	91.7
LLPS-Gaa-3900	Gasterosteus aculeatus	44.04	8e-24	93.6
LLPS-Scf-3035	Scleropages formosus	44.04	4e-24	94.4
LLPS-Otg-1787	Otolemur garnettii	44.04	2e-23	92.0
LLPS-Orc-3132	Oryctolagus cuniculus	44.04	6e-23	91.3
LLPS-Rhb-3705	Rhinopithecus bieti	44.04	3e-23	92.0
LLPS-Orn-0085	Oreochromis niloticus	44.04	5e-24	94.0
LLPS-Dar-1095	Danio rerio	44.04	3e-23	92.0
LLPS-Hos-3865	Homo sapiens	44.04	6e-24	93.6
LLPS-Pap-1529	Pan paniscus	44.04	3e-23	92.0
LLPS-Pat-0056	Pan troglodytes	44.04	3e-23	92.0
LLPS-Scm-3466	Scophthalmus maximus	44.04	1e-23	93.2
LLPS-Fec-0027	Felis catus	44.04	6e-24	93.6
LLPS-Lac-3987	Latimeria chalumnae	44.04	1e-24	95.5
LLPS-Loa-3720	Loxodonta africana	44.04	2e-23	92.4
LLPS-Xet-3849	Xenopus tropicalis	44.04	2e-23	92.8
LLPS-Nol-2139	Nomascus leucogenys	44.04	3e-23	92.0
LLPS-Ten-2094	Tetraodon nigroviridis	44.04	2e-24	95.1
LLPS-Caf-3413	Canis familiaris	44.04	6e-24	93.6
LLPS-Eqc-2533	Equus caballus	44.04	4e-23	91.7
LLPS-Mam-4595	Macaca mulatta	44.04	3e-23	92.0
LLPS-Brn-2317	Brassica napus	43.75	4e-21	86.3
LLPS-Bro-0922	Brassica oleracea	43.75	4e-21	86.3
LLPS-Ova-0011	Ovis aries	43.52	1e-22	90.5
LLPS-Pes-3643	Pelodiscus sinensis	43.43	2e-19	81.6
LLPS-Mel-1380	Melampsora laricipopulina	43.4	3e-25	97.1
LLPS-Miv-1027	Microbotryum violaceum	43.24	1e-22	90.1
LLPS-Asm-0772	Astyanax mexicanus	43.12	1e-23	93.2
LLPS-Mea-3991	Mesocricetus auratus	43.12	2e-22	89.7
LLPS-Leo-3880	Lepisosteus oculatus	43.12	2e-23	92.8
LLPS-Cis-1188	Ciona savignyi	43.12	6e-24	94.0
LLPS-Xim-1962	Xiphophorus maculatus	43.12	1e-23	92.8
LLPS-Tut-2432	Tursiops truncatus	43.12	5e-23	91.7
LLPS-Tar-3823	Takifugu rubripes	43.12	4e-24	94.4
LLPS-Bot-4673	Bos taurus	43.12	5e-23	91.7
LLPS-Ict-4632	Ictidomys tridecemlineatus	43.12	5e-23	91.7
LLPS-Scp-1643	Schizosaccharomyces pombe	42.86	1e-21	87.8
LLPS-Phn-1020	Phaeosphaeria nodorum	42.74	3e-19	82.0
LLPS-Spr-0783	Sporisorium reilianum	42.73	3e-25	97.1
LLPS-Met-0957	Medicago truncatula	42.61	2e-25	97.8
LLPS-Fia-3276	Ficedula albicollis	42.59	2e-21	87.4
LLPS-Map-0522	Magnaporthe poae	42.48	3e-18	79.0
LLPS-Mao-0037	Magnaporthe oryzae	42.34	5e-17	75.9
LLPS-Gaga-1358	Gallus gallus	42.2	4e-22	89.0
LLPS-Coo-0588	Colletotrichum orbiculare	41.82	1e-16	75.1
LLPS-Usm-1139	Ustilago maydis	41.82	1e-24	95.5
LLPS-Kop-1348	Komagataella pastoris	41.59	2e-20	84.7
LLPS-Cae-1738	Caenorhabditis elegans	41.28	3e-23	92.0
LLPS-Scc-1482	Schizosaccharomyces cryophilus	41.07	6e-20	83.6
LLPS-Tum-1406	Tuber melanosporum	41.07	1e-16	74.7
LLPS-Cogr-0149	Colletotrichum graminicola	41.07	8e-14	67.4
LLPS-Nef-1657	Neosartorya fischeri	41.03	9e-15	70.1
LLPS-Asc-0650	Aspergillus clavatus	40.83	1e-15	72.0
LLPS-Asfu-1388	Aspergillus fumigatus	40.83	5e-16	73.2
LLPS-Mod-3834	Monodelphis domestica	40.79	1e-13	71.2
LLPS-Gas-0170	Galdieria sulphuraria	40.54	3e-18	79.0
LLPS-Ved-1502	Verticillium dahliae	40.4	3e-12	63.2
LLPS-Chr-1518	Chlamydomonas reinhardtii	40.37	4e-22	89.0
LLPS-Scj-1593	Schizosaccharomyces japonicus	40.18	2e-18	79.7
LLPS-Cog-0683	Colletotrichum gloeosporioides	40.18	2e-13	66.2
LLPS-Asni-0972	Aspergillus niger	40.17	4e-16	73.6
LLPS-Asf-0835	Aspergillus flavus	40.17	3e-16	73.9
LLPS-Aso-1260	Aspergillus oryzae	40.17	3e-16	73.9
LLPS-Abg-0909	Absidia glauca	40.0	6e-19	80.5
LLPS-Asg-0117	Ashbya gossypii	39.47	3e-18	79.0
LLPS-Blg-0919	Blumeria graminis	39.47	6e-14	67.8
LLPS-Cas-0016	Carlito syrichta	39.45	9e-15	69.7
LLPS-Asn-0346	Aspergillus nidulans	39.42	4e-13	65.5
LLPS-Beb-0224	Beauveria bassiana	39.09	7e-16	72.8
LLPS-Poa-4532	Pongo abelii	39.05	2e-15	70.5
LLPS-Trr-1354	Trichoderma reesei	38.39	3e-15	70.9
LLPS-Trv-1281	Trichoderma virens	38.39	3e-15	70.9
LLPS-Osl-1214	Ostreococcus lucimarinus	38.33	2e-20	85.1
LLPS-Fuo-0976	Fusarium oxysporum	38.18	3e-14	68.6
LLPS-Yal-1321	Yarrowia lipolytica	38.05	1e-16	74.7
LLPS-Fus-0752	Fusarium solani	38.05	4e-13	65.9
LLPS-Sac-0107	Saccharomyces cerevisiae	37.72	5e-15	70.5
LLPS-Dos-1164	Dothistroma septosporum	35.83	4e-15	70.9
LLPS-Zyt-0866	Zymoseptoria tritici	35.54	4e-14	68.6
LLPS-Scs-0525	Sclerotinia sclerotiorum	34.92	1e-11	61.6
LLPS-Man-2498	Macaca nemestrina	32.11	6e-10	56.6
LLPS-Dio-2395	Dipodomys ordii	29.7	4e-06	45.8
LLPS-Mup-0417	Mustela putorius furo	28.7	8e-06	45.1

LLPS-Orb-2108

Protein Sequence

Nucleotide Sequence