Pan troglodytes      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 33 genes.  Reviewed (0 or Unreviewed (33

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Pat-2330
ENSPTRG00000052729.1
A0A2I3TPN1
2
LLPS-Pat-2496
ENSPTRG00000009748.5
A0A2I3RVG8
CHMP6
3
LLPS-Pat-2086
ENSPTRG00000005205.6
H2Q6F8
CPSF6
4
LLPS-Pat-2745
ENSPTRG00000008458.4
A0A2I3TRE0
CYBA
5
LLPS-Pat-3614
ENSPTRG00000001759.6
H2Q0R0
DHX9
6
LLPS-Pat-0122
ENSPTRG00000005926.6
H2RA29
DIS3
7
LLPS-Pat-0702
ENSPTRG00000005832.6
H2Q7I0
ENOX1
8
LLPS-Pat-2543
ENSPTRG00000015831.5
A0A2J8K6R6
FAM53A
9
LLPS-Pat-4369
ENSPTRG00000003031.7
A0A2I3S167
FAM53B
10
LLPS-Pat-2450
ENSPTRG00000047703.1
A5A6H0
FOS
11
LLPS-Pat-1614
ENSPTRG00000008038.6
H2RA80
FUS
12
LLPS-Pat-1388
ENSPTRG00000048542.1
A0A2I3TBK1
GATA1
13
LLPS-Pat-2625
ENSPTRG00000000667.5
H2R940
HECTD3
14
LLPS-Pat-1802
ENSPTRG00000049417.1
A5A6H4
HNRNPA1
15
LLPS-Pat-4499
ENSPTRG00000010700.7
H2RCG1
IQCN
16
LLPS-Pat-1689
ENSPTRG00000021230.6
H2QXN2
KLF4
17
LLPS-Pat-3324
ENSPTRG00000010238.4
H2QEX0
LMNB2
18
LLPS-Pat-0592
ENSPTRG00000014345.6
H2R0A2
NOL12
19
LLPS-Pat-2706
ENSPTRG00000022010.6
H2QYS5
NONO
20
LLPS-Pat-1097
ENSPTRG00000005677.7
H2Q790
PSPC1
21
LLPS-Pat-3505
ENSPTRG00000003934.6
G2HHY2
RBM14
22
LLPS-Pat-1702
ENSPTRG00000003935.3
H2Q476
RBM4B
23
LLPS-Pat-2805
ENSPTRG00000003879.7
K7BMJ5
SCYL1
24
LLPS-Pat-0576
ENSPTRG00000000518.7
A0A2I3RZ14
SFPQ
25
LLPS-Pat-4223
ENSPTRG00000007940.5
A0A2J8IJP6
SH2B1
26
LLPS-Pat-0064
ENSPTRG00000000852.6
H2R8Z8
SRSF11
27
LLPS-Pat-0201
ENSPTRG00000000136.6
H2PY00
TARDBP
28
LLPS-Pat-2287
ENSPTRG00000008703.7
H2QC53
TP53
29
LLPS-Pat-4650
ENSPTRG00000015830.6
H2RAD2
UVSSA
30
LLPS-Pat-3513
ENSPTRG00000022247.4
K7D8W8
XIAP
31
LLPS-Pat-4330
ENSPTRG00000012362.6
H2QIJ8
ZC3H8
32
LLPS-Pat-4011
ENSPTRG00000009969.4
H2QEF6
ZNF24
33
LLPS-Pat-2396
ENSPTRG00000011535.5
K7CLF4
ZNF444