Xiphophorus maculatus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 101 genes.  Reviewed (0 or Unreviewed (101

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Xim-0013
ENSXMAG00000004019.2
M3ZPB0
2
LLPS-Xim-0037
ENSXMAG00000008854.2
M4A335
3
LLPS-Xim-0041
ENSXMAG00000025530.1
A0A3B5QNR5
4
LLPS-Xim-0095
ENSXMAG00000000699.2
A0A3B5R4U2
5
LLPS-Xim-0126
ENSXMAG00000012789.2
A0A3B5PVB8
6
LLPS-Xim-0131
ENSXMAG00000006306.2
A0A3B5R1G7
7
LLPS-Xim-0150
ENSXMAG00000002594.2
M3ZK59
8
LLPS-Xim-0190
ENSXMAG00000002058.2
M3ZIP1
9
LLPS-Xim-0248
ENSXMAG00000009835.2
M4A5W0
10
LLPS-Xim-0286
ENSXMAG00000015544.2
M4AM77
11
LLPS-Xim-0295
ENSXMAG00000006196.2
M3ZVH5
12
LLPS-Xim-0310
ENSXMAG00000001097.2
M3ZFV7
13
LLPS-Xim-0319
ENSXMAG00000024957.1
A0A3B5QPU0
14
LLPS-Xim-0327
ENSXMAG00000017165.2
A0A3B5QLA1
15
LLPS-Xim-0348
ENSXMAG00000003050.2
M3ZLG4
16
LLPS-Xim-0471
ENSXMAG00000018965.2
A0A3B5QCV9
17
LLPS-Xim-0495
ENSXMAG00000025279.1
A0A3B5QXP8
18
LLPS-Xim-0530
ENSXMAG00000006791.2
M3ZX79
19
LLPS-Xim-0595
ENSXMAG00000002608.2
M3ZK82
20
LLPS-Xim-0717
ENSXMAG00000002377.2
A0A3B5RDL2
21
LLPS-Xim-0732
ENSXMAG00000015925.2
M4ANC5
22
LLPS-Xim-0734
ENSXMAG00000008505.2
M4A265
23
LLPS-Xim-0762
ENSXMAG00000015676.2
M4AML4
24
LLPS-Xim-0818
ENSXMAG00000004764.2
M3ZRD3
25
LLPS-Xim-0825
ENSXMAG00000008819.2
M4A301
26
LLPS-Xim-0866
ENSXMAG00000013331.2
M4AG03
27
LLPS-Xim-0929
ENSXMAG00000002007.2
A0A3B5QR80
28
LLPS-Xim-0951
ENSXMAG00000007369.2
M3ZYW8
29
LLPS-Xim-0952
ENSXMAG00000003285.2
M3ZM68
30
LLPS-Xim-1040
ENSXMAG00000009281.2
M4A4B4
31
LLPS-Xim-1071
ENSXMAG00000029068.1
A0A3B5PXQ6
32
LLPS-Xim-1084
ENSXMAG00000001455.2
M3ZGW7
33
LLPS-Xim-1139
ENSXMAG00000011766.2
M4ABD3
34
LLPS-Xim-1148
ENSXMAG00000006903.2
M3ZXI5
35
LLPS-Xim-1214
ENSXMAG00000016225.2
M4AP60
36
LLPS-Xim-1340
ENSXMAG00000001577.2
M3ZHF3
37
LLPS-Xim-1368
ENSXMAG00000005670.2
M3ZU16
38
LLPS-Xim-1431
ENSXMAG00000009356.2
M4A4H7
39
LLPS-Xim-1442
ENSXMAG00000008972.2
M4A3I3
40
LLPS-Xim-1514
ENSXMAG00000008674.2
A0A3B5QZQ8
41
LLPS-Xim-1516
ENSXMAG00000028868.1
A0A3B5PQJ9
42
LLPS-Xim-1564
ENSXMAG00000014740.2
M4AJX3
43
LLPS-Xim-1631
ENSXMAG00000005196.2
M3ZSN3
44
LLPS-Xim-1686
ENSXMAG00000008312.2
A0A3B5PZP5
45
LLPS-Xim-1693
ENSXMAG00000013448.2
A0A3B5PST0
46
LLPS-Xim-1719
ENSXMAG00000004678.2
M3ZR66
47
LLPS-Xim-1865
ENSXMAG00000008323.2
M4A1L6
48
LLPS-Xim-1887
ENSXMAG00000028098.1
A0A3B5R566
49
LLPS-Xim-1918
ENSXMAG00000000768.2
M3ZEY1
50
LLPS-Xim-1982
ENSXMAG00000018345.2
M4AVB7
51
LLPS-Xim-2007
ENSXMAG00000005703.2
A0A3B5PT00
52
LLPS-Xim-2011
ENSXMAG00000007316.2
A0A3B5QQX8
53
LLPS-Xim-2043
ENSXMAG00000005188.2
A0A3B5R747
54
LLPS-Xim-2090
ENSXMAG00000027266.1
A0A3B5QWK4
55
LLPS-Xim-2172
ENSXMAG00000013097.2
M4AF82
56
LLPS-Xim-2234
ENSXMAG00000004923.2
A0A3B5QAF5
57
LLPS-Xim-2254
ENSXMAG00000019885.2
M4AZN7
58
LLPS-Xim-2261
ENSXMAG00000006547.2
M3ZWH5
59
LLPS-Xim-2359
ENSXMAG00000002313.2
M3ZJD1
60
LLPS-Xim-2411
ENSXMAG00000008485.2
M4A220
61
LLPS-Xim-2427
ENSXMAG00000024160.1
A0A3B5QSB9
62
LLPS-Xim-2438
ENSXMAG00000029337.1
A0A3B5QVS7
63
LLPS-Xim-2482
ENSXMAG00000006816.2
M3ZXV3
64
LLPS-Xim-2500
ENSXMAG00000015940.2
A0A3B5PVB7
65
LLPS-Xim-2543
ENSXMAG00000007353.2
A0A3B5R002
66
LLPS-Xim-2588
ENSXMAG00000002753.2
A0A3B5PTY0
67
LLPS-Xim-2594
ENSXMAG00000025483.1
A0A3B5QE60
68
LLPS-Xim-2612
ENSXMAG00000004752.2
M3ZRB7
69
LLPS-Xim-2682
ENSXMAG00000007822.2
A0A3B5Q7D1
70
LLPS-Xim-2750
ENSXMAG00000018580.2
M4AVY3
71
LLPS-Xim-2801
ENSXMAG00000015928.2
M4ANB3
72
LLPS-Xim-2814
ENSXMAG00000018644.2
M4AW51
73
LLPS-Xim-2835
ENSXMAG00000013937.2
M4AHN3
74
LLPS-Xim-2918
ENSXMAG00000002287.2
M3ZJA3
75
LLPS-Xim-2980
ENSXMAG00000002542.2
A0A3B5Q339
76
LLPS-Xim-3159
ENSXMAG00000022410.1
A0A3B5Q1Q6
77
LLPS-Xim-3192
ENSXMAG00000025239.1
A0A3B5QXN4
78
LLPS-Xim-3221
ENSXMAG00000003383.2
A0A3B5Q570
79
LLPS-Xim-3255
ENSXMAG00000003838.2
M3ZNQ8
80
LLPS-Xim-3512
ENSXMAG00000029464.1
A0A3B5QFH6
81
LLPS-Xim-3546
ENSXMAG00000012622.2
M4ADV5
82
LLPS-Xim-3552
ENSXMAG00000011979.2
M4AC09
83
LLPS-Xim-3567
ENSXMAG00000003186.2
M3ZLV4
84
LLPS-Xim-3597
ENSXMAG00000009422.2
A0A3B5QFK6
85
LLPS-Xim-3793
ENSXMAG00000012218.2
M4ACP3
86
LLPS-Xim-3805
ENSXMAG00000002426.2
M3ZJN2
87
LLPS-Xim-3845
ENSXMAG00000000936.2
M3ZFI5
88
LLPS-Xim-3926
ENSXMAG00000000566.2
A0A3B5RBH7
89
LLPS-Xim-3938
ENSXMAG00000009547.2
M4A529
90
LLPS-Xim-4098
ENSXMAG00000016060.2
A0A3B5Q5D1
91
LLPS-Xim-4128
ENSXMAG00000010797.2
A0A3B5R7M6
92
LLPS-Xim-4129
ENSXMAG00000001777.2
M3ZHT5
93
LLPS-Xim-4147
ENSXMAG00000004893.2
A0A3B5QQU2
94
LLPS-Xim-0827
ENSXMAG00000000787.2
M3ZF21
AGO2
95
LLPS-Xim-1596
ENSXMAG00000009197.2
M4A423
ERH
96
LLPS-Xim-2215
ENSXMAG00000009130.2
M4A3W8
EZH1
97
LLPS-Xim-1472
ENSXMAG00000028744.1
A0A3B5PV53
FGFR1
98
LLPS-Xim-2596
ENSXMAG00000021053.1
A0A3B5PWS8
PPIG
99
LLPS-Xim-0300
ENSXMAG00000004827.2
M3ZRJ1
RNPS1
100
LLPS-Xim-0641
ENSXMAG00000018312.2
M4AV61
SPOP
101
LLPS-Xim-0270
ENSXMAG00000019180.2
M4AXN7
SRSF11 (1 of many)