Oryza indica      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 54 genes.  Reviewed (0 or Unreviewed (54

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Ori-1850
BGIOSGA026368
A2YPT7
CARM1
2
LLPS-Ori-0634
BGIOSGA019809
A2Y4B6
CDKD-1
3
LLPS-Ori-0689
BGIOSGA003104
A2WMM2
OsI_01090
4
LLPS-Ori-0645
BGIOSGA003208
B8AC69
OsI_01292
5
LLPS-Ori-1698
BGIOSGA003675
B8A9B6
OsI_02243
6
LLPS-Ori-1343
BGIOSGA004666
B8AB88
OsI_04163
7
LLPS-Ori-0266
BGIOSGA007348
A2WZV9
OsI_05501
8
LLPS-Ori-0889
BGIOSGA007665
B8AIW7
OsI_06097
9
LLPS-Ori-0850
BGIOSGA007873
A2X2W1
OsI_06527
10
LLPS-Ori-0415
BGIOSGA008208
A2X4T8
OsI_07210
11
LLPS-Ori-0290
BGIOSGA006271
B8AJE4
OsI_07627
12
LLPS-Ori-1768
BGIOSGA008587
B8AF25
OsI_07988
13
LLPS-Ori-0305
BGIOSGA006062
B8AFD9
OsI_08036
14
LLPS-Ori-0750
BGIOSGA005585
A2X9T5
OsI_09006
15
LLPS-Ori-0711
BGIOSGA005530
B8AJ61
OsI_09100
16
LLPS-Ori-0080
BGIOSGA005306
B8AFJ9
OsI_09560
17
LLPS-Ori-0155
BGIOSGA011059
B8AKD3
OsI_10848
18
LLPS-Ori-0475
BGIOSGA011026
B8AKP6
OsI_10913
19
LLPS-Ori-1158
BGIOSGA010995
A2XF57
OsI_10999
20
LLPS-Ori-0866
BGIOSGA012349
B8ALL6
OsI_11023
21
LLPS-Ori-0623
BGIOSGA010914
B8AM21
OsI_11177
22
LLPS-Ori-0367
BGIOSGA012587
B8AP19
OsI_11485
23
LLPS-Ori-2204
BGIOSGA012675
A2XH03
OsI_11679
24
LLPS-Ori-1848
BGIOSGA010654
A2XH93
OsI_11769
25
LLPS-Ori-1204
BGIOSGA009972
B8AQD5
OsI_13177
26
LLPS-Ori-1060
BGIOSGA009915
A2XLE8
OsI_13297
27
LLPS-Ori-1497
BGIOSGA009469
A2XNW5
OsI_14264
28
LLPS-Ori-0600
BGIOSGA009403
B8ANT2
OsI_14416
29
LLPS-Ori-1319
BGIOSGA016164
B8ASH5
OsI_15440
30
LLPS-Ori-0842
BGIOSGA016263
A2XSQ6
OsI_15642
31
LLPS-Ori-1038
BGIOSGA015042
A2XTS3
OsI_16006
32
LLPS-Ori-1826
BGIOSGA017080
B8ATW2
OsI_17328
33
LLPS-Ori-0470
BGIOSGA019015
B8AWW3
OsI_18120
34
LLPS-Ori-0514
BGIOSGA019209
A2Y0J7
OsI_18512
35
LLPS-Ori-0352
BGIOSGA018755
B8AYE9
OsI_18577
36
LLPS-Ori-2054
BGIOSGA019712
B8AXE7
OsI_19658
37
LLPS-Ori-1486
BGIOSGA022020
A2Y8T0
OsI_21459
38
LLPS-Ori-0417
BGIOSGA022444
B8B3M3
OsI_21961
39
LLPS-Ori-2209
BGIOSGA022686
B8B0K4
OsI_22514
40
LLPS-Ori-0989
BGIOSGA023623
B8B2J9
OsI_24503
41
LLPS-Ori-1975
BGIOSGA020512
B8B2K1
OsI_24505
42
LLPS-Ori-0333
BGIOSGA025150
A2YI60
OsI_24894
43
LLPS-Ori-1706
BGIOSGA024802
B8B7C9
OsI_24939
44
LLPS-Ori-0441
BGIOSGA025251
B8B7Q2
OsI_25113
45
LLPS-Ori-2029
BGIOSGA024698
B8B7X7
OsI_25179
46
LLPS-Ori-0178
BGIOSGA026168
B8B4X9
OsI_26921
47
LLPS-Ori-0872
BGIOSGA023731
B8B5U9
OsI_27298
48
LLPS-Ori-1084
BGIOSGA027614
B8BAX3
OsI_27901
49
LLPS-Ori-2001
BGIOSGA031082
B8BDI3
OsI_32022
50
LLPS-Ori-0174
BGIOSGA032377
B8BFL9
OsI_32563
51
LLPS-Ori-1162
BGIOSGA031731
B8BHD2
OsI_33953
52
LLPS-Ori-0483
BGIOSGA033663
B8BLH5
OsI_36782
53
LLPS-Ori-2169
BGIOSGA036231
B8BPI9
OsI_38251
54
LLPS-Ori-0461
BGIOSGA035972
B8BML9
OsI_38819