• Disorder▼
  • Domain▼
  • PTM▼
  • Variation▼
  • Mutation▼
  • Interaction▼
  • Disease▼
  • Drug▼
  • Physicochemical▼
  • Function▼
  • Proteomics▼
  • Structure▼
  • Localization▼
  • Expression▼
  • Element▼
  • Methylation▼

LLPS-Ori-0623
OsI_11177

Integrated Annotations

▼ OVERVIEW

Status: Unreviewed
Protein Name: U2 small nuclear ribonucleoprotein B''
Gene Name: OsI_11177
Ensembl Gene: BGIOSGA010914
Ensembl Protein: BGIOSGA010914-PA
Organism: Oryza indica
Taxa ID: 39946
LLPS Type: Others


▼ PROPERTY


——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:
CondensateEvidenceOrthologs
Cajal body, Nuclear speckle, NucleolusPredicted from orthologs(View)

▼ FUNCTION

Involved in nuclear pre-mRNA splicing.

▼ CROSS REFERENCE

DatabaseNucleotide IDProtein ID
EnsemblBGIOSGA010914-TABGIOSGA010914-PA
UniProtB8AM21, RU2B_ORYSI
GeneBankCM000128EEC75061.1

▼ SEQUENCE

Protein Sequence (FASTA)
1     MLSGDIPPNQ  TVYLRNLNEK  VKKEELKRSL  YALCSQYGRI  LDVVALKTPK  LRGQAWVVFS  60
61    EITAATNAFR  GLQEFDFYGK  RMRVQYAKTK  SDCLATEDGS  TAPKEKRKKQ  EEKAAEKKRR  120
121   AEEAQQSGPN  AAAQSNGTGY  QASRLGKTSQ  EPPAPPNNIL  FIQNLPAETT  SMMLQILFQQ  180
181   YPGFREVRMI  EAKPGIAFVE  YEDDSQSMVA  MQALQGFKIT  PYNPMAISYA  KK  232
Nucleotide CDS Sequence (FASTA)
1     ATGTTGTCCG  GCGACATACC  CCCGAACCAG  ACGGTCTACC  TCAGGAACCT  CAACGAGAAG  60
61    GTCAAGAAAG  AAGAATTAAA  GAGATCACTC  TATGCGTTGT  GCTCCCAATA  TGGGAGGATA  120
121   CTGGATGTGG  TGGCCTTAAA  AACACCTAAA  CTGAGGGGGC  AGGCATGGGT  GGTCTTCAGC  180
181   GAAATTACCG  CCGCCACAAA  TGCTTTCCGT  GGACTGCAGG  AATTCGATTT  TTATGGCAAA  240
241   AGAATGCGAG  TACAATATGC  GAAAACAAAA  TCTGACTGTC  TTGCAACCGA  AGATGGTTCT  300
301   ACTGCTCCAA  AAGAGAAAAG  AAAGAAGCAA  GAGGAGAAAG  CAGCGGAGAA  AAAACGACGA  360
361   GCTGAAGAGG  CGCAACAATC  TGGTCCTAAT  GCTGCTGCCC  AAAGCAATGG  GACTGGTTAT  420
421   CAAGCCTCAC  GCCTGGGCAA  GACTTCGCAA  GAGCCACCTG  CACCTCCAAA  CAATATCCTT  480
481   TTCATCCAGA  ACTTACCAGC  TGAGACTACA  AGCATGATGC  TCCAGATCCT  GTTCCAGCAG  540
541   TACCCTGGTT  TCAGGGAAGT  CCGGATGATC  GAAGCCAAGC  CAGGCATTGC  TTTTGTGGAA  600
601   TACGAGGACG  ACAGCCAGTC  TATGGTTGCA  ATGCAAGCTC  TGCAGGGTTT  CAAGATCACC  660
661   CCATACAACC  CAATGGCTAT  ATCCTACGCA  AAGAAGTGA  699

▼ KEYWORD

ID
Family
Complete proteome
Cytoplasm
mRNA processing
mRNA splicing
Nucleus
Reference proteome
Repeat
Ribonucleoprotein
RNA-binding
Spliceosome

▼ GENE ONTOLOGY

ID
Classification
Description
Cellular Component
Cajal body
Cellular Component
Cytoplasm
Cellular Component
Nucleoplasm
Cellular Component
Spliceosomal complex
Cellular Component
U2 snRNP
Molecular Function
RNA binding
Biological Process
MRNA processing
Biological Process
RNA splicing

▼ ORTHOLOGY

DrLLPS IDOrganismIdentityE-valueScore
LLPS-Org-0970Oryza glaberrima99.575e-137 391
LLPS-Ors-1073Oryza sativa99.575e-137 391
LLPS-Orp-0248Oryza punctata98.941e-55 198
LLPS-Lep-0080Leersia perrieri98.713e-134 384
LLPS-Orgl-1233Oryza glumaepatula96.121e-134 385
LLPS-Orni-0834Oryza nivara96.121e-134 385
LLPS-Orb-0216Oryza barthii96.121e-134 385
LLPS-Orr-1390Oryza rufipogon96.121e-134 385
LLPS-Orbr-1453Oryza brachyantha93.566e-130 374
LLPS-Orm-1013Oryza meridionalis93.521e-132 381
LLPS-Sob-0232Sorghum bicolor93.136e-126 363
LLPS-Zem-0362Zea mays92.273e-124 359
LLPS-Sei-1033Setaria italica91.423e-118 345
LLPS-Brd-1172Brachypodium distachyon87.122e-114 334
LLPS-Tra-2624Triticum aestivum84.988e-112 327
LLPS-Hov-1621Hordeum vulgare84.552e-111 327
LLPS-Tru-0700Triticum urartu82.984e-49 166
LLPS-Pot-0501Populus trichocarpa73.53e-92 278
LLPS-Mua-1692Musa acuminata73.222e-95 286
LLPS-Viv-0127Vitis vinifera73.081e-92 278
LLPS-Cus-1293Cucumis sativus71.984e-92 277
LLPS-Amt-1683Amborella trichopoda71.491e-89 271
LLPS-Mae-1280Manihot esculenta71.432e-90 273
LLPS-Gor-0865Gossypium raimondii69.833e-89 270
LLPS-Coc-1783Corchorus capsularis69.531e-82 270
LLPS-Met-1455Medicago truncatula69.365e-88 267
LLPS-Thc-2091Theobroma cacao69.338e-89 269
LLPS-Nia-1341Nicotiana attenuata69.12e-92 278
LLPS-Prp-1603Prunus persica68.674e-87 265
LLPS-Phv-0462Phaseolus vulgaris68.673e-87 265
LLPS-Vir-0010Vigna radiata68.244e-85 259
LLPS-Sot-1677Solanum tuberosum68.242e-93 281
LLPS-Glm-0206Glycine max67.384e-85 259
LLPS-Via-2431Vigna angularis67.322e-67 219
LLPS-Arl-0182Arabidopsis lyrata66.528e-87 264
LLPS-Sol-1160Solanum lycopersicum66.523e-90 273
LLPS-Dac-1388Daucus carota66.381e-87 266
LLPS-Art-0501Arabidopsis thaliana65.673e-86 262
LLPS-Brn-1798Brassica napus61.643e-77 239
LLPS-Brr-0431Brassica rapa61.643e-77 239
LLPS-Bro-1087Brassica oleracea61.443e-76 236
LLPS-Phn-0492Phaeosphaeria nodorum61.292e-2295.5
LLPS-Xet-0106Xenopus tropicalis61.221e-24 103
LLPS-Mod-2853Monodelphis domestica61.221e-25 106
LLPS-Hea-0496Helianthus annuus61.112e-82 252
LLPS-Anp-1917Anas platyrhynchos57.834e-25 105
LLPS-Xim-2750Xiphophorus maculatus57.695e-2399.0
LLPS-Orn-1224Oreochromis niloticus57.691e-2298.2
LLPS-Pof-0342Poecilia formosa57.695e-2399.0
LLPS-Mum-2108Mus musculus57.611e-2195.1
LLPS-Php-0635Physcomitrella patens57.52e-63 204
LLPS-Paa-1040Papio anubis56.993e-2296.7
LLPS-Mal-0632Mandrillus leucophaeus56.993e-2296.7
LLPS-Ova-1853Ovis aries56.993e-2296.7
LLPS-Myl-2014Myotis lucifugus56.994e-2296.7
LLPS-Mup-0696Mustela putorius furo56.993e-2296.7
LLPS-Aim-1499Ailuropoda melanoleuca56.993e-2297.1
LLPS-Ran-0365Rattus norvegicus56.993e-2296.7
LLPS-Dio-3552Dipodomys ordii56.993e-2297.1
LLPS-Bot-3197Bos taurus56.993e-2296.7
LLPS-Fud-0636Fukomys damarensis56.993e-2297.1
LLPS-Caj-0977Callithrix jacchus56.993e-2297.1
LLPS-Gog-3379Gorilla gorilla56.993e-2296.7
LLPS-Sah-3688Sarcophilus harrisii56.996e-2295.9
LLPS-Cea-3357Cercocebus atys56.993e-2296.7
LLPS-Sus-4620Sus scrofa56.993e-2296.7
LLPS-Mea-1095Mesocricetus auratus56.993e-2296.7
LLPS-Maf-1916Macaca fascicularis56.993e-2296.7
LLPS-Chs-0113Chlorocebus sabaeus56.993e-2296.7
LLPS-Cas-1675Carlito syrichta56.993e-2297.1
LLPS-Mam-3763Macaca mulatta56.993e-2296.7
LLPS-Poa-1260Pongo abelii56.993e-2296.7
LLPS-Eqc-2324Equus caballus56.993e-2297.1
LLPS-Cap-1023Cavia porcellus56.993e-2297.1
LLPS-Rhb-0139Rhinopithecus bieti56.998e-2295.5
LLPS-Otg-0487Otolemur garnettii56.993e-2297.1
LLPS-Man-2455Macaca nemestrina56.993e-2296.7
LLPS-Urm-1661Ursus maritimus56.993e-2297.1
LLPS-Pap-3583Pan paniscus56.993e-2296.7
LLPS-Pat-1670Pan troglodytes56.993e-2296.7
LLPS-Hos-1937Homo sapiens56.993e-2296.7
LLPS-Fec-0946Felis catus56.993e-2297.1
LLPS-Leo-2150Lepisosteus oculatus56.639e-24 101
LLPS-Ict-0999Ictidomys tridecemlineatus56.522e-2194.4
LLPS-Gaa-2855Gasterosteus aculeatus56.411e-2297.8
LLPS-Scf-0665Scleropages formosus56.411e-2297.8
LLPS-Tar-1769Takifugu rubripes56.419e-2398.2
LLPS-Asm-2129Astyanax mexicanus56.417e-2398.6
LLPS-Icp-3303Ictalurus punctatus56.416e-2399.0
LLPS-Anc-0909Anolis carolinensis56.412e-2296.7
LLPS-Ten-1571Tetraodon nigroviridis56.414e-2399.4
LLPS-Fia-0349Ficedula albicollis56.413e-2297.1
LLPS-Dar-3475Danio rerio56.411e-2297.8
LLPS-Lac-2672Latimeria chalumnae56.411e-2297.8
LLPS-Sem-0020Selaginella moellendorffii55.655e-61 197
LLPS-Nol-2437Nomascus leucogenys54.173e-2090.9
LLPS-Aon-2002Aotus nancymaae53.931e-2297.8
LLPS-Ora-0093Ornithorhynchus anatinus53.932e-2397.1
LLPS-Orl-2736Oryzias latipes53.852e-2194.4
LLPS-Loa-1568Loxodonta africana52.591e-60 196
LLPS-Scm-3194Scophthalmus maximus52.199e-56 184
LLPS-Caf-1441Canis familiaris52.163e-60 196
LLPS-Orc-0992Oryctolagus cuniculus52.161e-59 194
LLPS-Pes-0926Pelodiscus sinensis52.143e-60 195
LLPS-Tag-2340Taeniopygia guttata51.522e-60 196
LLPS-Tut-0910Tursiops truncatus51.325e-60 195
LLPS-Gaga-2994Gallus gallus51.081e-57 189
LLPS-Meg-0844Meleagris gallopavo51.081e-57 189
LLPS-Map-0423Magnaporthe poae49.481e-2296.7
LLPS-Drm-1677Drosophila melanogaster48.894e-51 172
LLPS-Chr-0133Chlamydomonas reinhardtii47.582e-61 198
LLPS-Cii-0947Ciona intestinalis46.492e-48 164
LLPS-Gas-0799Galdieria sulphuraria42.676e-45 157
LLPS-Cae-1229Caenorhabditis elegans40.692e-39 141
LLPS-Abg-0858Absidia glauca38.221e-32 126
LLPS-Scs-0631Sclerotinia sclerotiorum37.294e-32 123
LLPS-Nec-1010Neurospora crassa36.489e-24 100
LLPS-Crn-0709Cryptococcus neoformans36.441e-27 111
LLPS-Dos-0429Dothistroma septosporum35.919e-27 108
LLPS-Pug-0534Puccinia graminis35.861e-24 103
LLPS-Scc-1270Schizosaccharomyces cryophilus35.842e-27 110
LLPS-Nef-0995Neosartorya fischeri35.277e-27 109
LLPS-Mel-1206Melampsora laricipopulina35.222e-29 116
LLPS-Asn-1600Aspergillus nidulans34.845e-29 115
LLPS-Ved-0562Verticillium dahliae34.42e-24 102
LLPS-Zyt-1456Zymoseptoria tritici34.361e-27 110
LLPS-Fus-0058Fusarium solani34.321e-24 103
LLPS-Scp-0390Schizosaccharomyces pombe34.062e-29 116
LLPS-Trr-0514Trichoderma reesei33.781e-23 101
LLPS-Asfu-1161Aspergillus fumigatus33.672e-2297.1
LLPS-Yal-0898Yarrowia lipolytica33.334e-2295.5
LLPS-Trv-0572Trichoderma virens32.791e-24 102
LLPS-Cogr-1401Colletotrichum graminicola32.782e-2399.4
LLPS-Blg-0812Blumeria graminis32.489e-25 103
LLPS-Coo-0959Colletotrichum orbiculare31.381e-23 100
LLPS-Cog-0182Colletotrichum gloeosporioides30.992e-2399.4
LLPS-Osl-0067Ostreococcus lucimarinus30.779e-26 105
LLPS-Ast-1270Aspergillus terreus30.731e-2297.4
LLPS-Asni-0987Aspergillus niger30.73e-2399.4
LLPS-Aso-1522Aspergillus oryzae30.141e-2297.8