Medicago truncatula      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 54 genes.  Reviewed (0 or Unreviewed (54

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Met-2411
MTR_8g077840
G7LEU2
11405190
2
LLPS-Met-0823
MTR_5g070100
G7K6D4
11406304
3
LLPS-Met-0036
MTR_8g058530
G7LC00
11410860
4
LLPS-Met-1991
MTR_8g106170
G7LCC6
11411169
5
LLPS-Met-0939
MTR_3g088510
G7J4Z8
11411506
6
LLPS-Met-1037
MTR_4g118630
G7JJ12
11411739
7
LLPS-Met-1182
MTR_8g106740
G7LD93
11414393
8
LLPS-Met-0519
MTR_3g086530
G7J352
11415007
9
LLPS-Met-1455
MTR_5g074430
I3SFF7
11416715
10
LLPS-Met-0534
MTR_3g091250
G7J6U4
11418483
11
LLPS-Met-0453
MTR_4g119900
G7JLH5
11420237
12
LLPS-Met-0074
MTR_5g085250
G7KH91
11420758
13
LLPS-Met-2053
MTR_2g007800
A2Q483
11421161
14
LLPS-Met-1730
MTR_5g087500
G7KHG8
11421436
15
LLPS-Met-0769
MTR_2g064740
G7IJ55
11423909
16
LLPS-Met-1705
MTR_7g112760
G7KXJ7
11424462
17
LLPS-Met-1003
MTR_1g012420
G7I6Z7
11424505
18
LLPS-Met-0675
MTR_2g103960
G7II78
11425902
19
LLPS-Met-0412
MTR_4g064740
G7JCF1
11427645
20
LLPS-Met-2513
MTR_4g031680
G7JM14
11429844
21
LLPS-Met-0775
MTR_5g023060
G7JYS1
11430997
22
LLPS-Met-2375
MTR_7g110060
G7KTQ8
11431576
23
LLPS-Met-1259
MTR_1g014230
G7I895
11432981
24
LLPS-Met-2008
MTR_5g079870
G7KBR1
11433183
25
LLPS-Met-1727
MTR_3g064180
G7J7W2
11434378
26
LLPS-Met-0164
MTR_5g090130
G7KCY6
11436592
27
LLPS-Met-0615
MTR_4g077660
G7JRR9
11437746
28
LLPS-Met-2146
MTR_1g113830
G7IDC0
11440718
29
LLPS-Met-2163
MTR_4g083380
G7JHL2
11441386
30
LLPS-Met-2641
MTR_7g082150
G7KUA6
11442373
31
LLPS-Met-1834
MTR_5g095010
B7FNC6
11442499
32
LLPS-Met-1319
MTR_1g085470
A0A072VMT1
25484718
33
LLPS-Met-0635
MTR_1g112910
A0A072VSL7
25485639
34
LLPS-Met-2126
MTR_2g011480
I3S8Y8
25485902
35
LLPS-Met-1442
MTR_2g436510
A0A072V5D5
25488112
36
LLPS-Met-0723
MTR_4g036415
A0A072UK27
25491878
37
LLPS-Met-1296
MTR_4g084990
B7FJ52
25493023
38
LLPS-Met-2020
MTR_6g024135
A0A072U8Q5
25495758
39
LLPS-Met-1621
MTR_6g080470
A0A072UB06
25496775
40
LLPS-Met-0677
MTR_7g115550
A0A072U4G1
25499707
41
LLPS-Met-1063
MTR_8g009970
A0A072TWV3
25500193
42
LLPS-Met-0706
MTR_8g028640
A0A072TNN4
25500833
43
LLPS-Met-1263
MTR_8g089990
B7FID7
25501878
44
LLPS-Met-1512
MTR_1g044720
G7I632
MTR_1g044720
45
LLPS-Met-2416
MTR_1g083400
G7I8Q6
MTR_1g083400
46
LLPS-Met-0682
MTR_2g007000
G7IPH0
MTR_2g007000
47
LLPS-Met-2223
MTR_2g009110
G7IPK2
MTR_2g009110
48
LLPS-Met-0383
MTR_4g063557
A0A072UK32
MTR_4g063557
49
LLPS-Met-1892
MTR_4g094235
A0A072UN43
MTR_4g094235
50
LLPS-Met-1001
MTR_4g102790
A0A072URL3
MTR_4g102790
51
LLPS-Met-2357
MTR_5g016870
G7K5B7
MTR_5g016870
52
LLPS-Met-0625
MTR_6g004180
A0A072U4R6
MTR_6g004180
53
LLPS-Met-0674
MTR_7g095750
A0A072U3W7
MTR_7g095750
54
LLPS-Met-1046
MTR_8g070490
G7LJD1
MTR_8g070490