Macaca mulatta      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 115 genes.  Reviewed (0 or Unreviewed (115

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Mam-0328
ENSMMUG00000021026.3
F7HGA5
2
LLPS-Mam-1680
ENSMMUG00000030097.2
A0A1D5R5L1
3
LLPS-Mam-2703
ENSMMUG00000041726.1
A0A1D5QUX7
4
LLPS-Mam-2772
ENSMMUG00000003260.3
A0A1D5Q1A7
5
LLPS-Mam-2776
ENSMMUG00000048382.1
A0A1D5QGV1
6
LLPS-Mam-0317
ENSMMUG00000008045.3
A0A1D5QH79
AGO2
7
LLPS-Mam-4060
ENSMMUG00000000885.3
A0A1D5RI42
AKAP17A
8
LLPS-Mam-0204
ENSMMUG00000012884.3
A0A1D5Q4N1
ALYREF
9
LLPS-Mam-1943
ENSMMUG00000001879.3
A0A1D5Q3S7
ANXA10
10
LLPS-Mam-3152
ENSMMUG00000012000.3
F7H0C7
ANXA2
11
LLPS-Mam-0546
ENSMMUG00000015930.3
F7AKY6
ARL6IP4
12
LLPS-Mam-3549
ENSMMUG00000007927.3
F7HT00
ATR
13
LLPS-Mam-0695
ENSMMUG00000043063.1
I2CYF2
BCAS2
14
LLPS-Mam-3483
ENSMMUG00000003795.3
F7GVG2
C15H9orf78
15
LLPS-Mam-2563
ENSMMUG00000004401.3
F7FM77
CARM1
16
LLPS-Mam-3769
ENSMMUG00000045187.1
A0A1D5QGZ6
CASC3
17
LLPS-Mam-1538
ENSMMUG00000016497.3
H9EPW8
CCNL1
18
LLPS-Mam-0648
ENSMMUG00000014389.3
F7BX98
CDC5L
19
LLPS-Mam-0058
ENSMMUG00000019876.3
F7GRY6
CDK1
20
LLPS-Mam-1604
ENSMMUG00000018621.3
F6XZK0
CDK7
21
LLPS-Mam-3617
ENSMMUG00000005063.3
A0A1D5RJM3
CDKL5
22
LLPS-Mam-1986
ENSMMUG00000023141.3
H9FPQ9
CLK2
23
LLPS-Mam-0333
ENSMMUG00000001758.3
H9ENA3
CSNK1A1
24
LLPS-Mam-3720
ENSMMUG00000017224.3
F7HE23
CTNNBL1
25
LLPS-Mam-0022
ENSMMUG00000008839.3
Q5TM17
DDX39B
26
LLPS-Mam-1751
ENSMMUG00000012463.3
F7FFQ7
DDX46
27
LLPS-Mam-2041
ENSMMUG00000020098.3
F7GMJ5
DGCR8
28
LLPS-Mam-3264
ENSMMUG00000017906.3
H9FTU6
DNAJB1
29
LLPS-Mam-0247
ENSMMUG00000013160.2
A0A1D5R788
DNAJC17
30
LLPS-Mam-2622
ENSMMUG00000023566.3
F7FZF8
DYRK3
31
LLPS-Mam-0739
ENSMMUG00000010043.3
A0A1D5QFG6
EGF
32
LLPS-Mam-1557
ENSMMUG00000021571.3
I0FGK6
ERH
33
LLPS-Mam-0425
ENSMMUG00000014792.3
F6WCW5
FAM76B
34
LLPS-Mam-2325
ENSMMUG00000014257.3
F7BZ38
FAM83H
35
LLPS-Mam-3237
ENSMMUG00000008966.3
A0A1D5RHD5
FANCD2
36
LLPS-Mam-3909
ENSMMUG00000011155.3
F6VGI4
FANCI
37
LLPS-Mam-1886
ENSMMUG00000005052.3
F7DDP8
FBXL18
38
LLPS-Mam-3166
ENSMMUG00000022478.3
A0A1D5R2V9
FGFR1
39
LLPS-Mam-1515
ENSMMUG00000023300.3
A0A1D5QW92
FRMD8
40
LLPS-Mam-3324
ENSMMUG00000019637.3
F6T5U5
FUS
41
LLPS-Mam-2252
ENSMMUG00000048439.1
A0A1D5R8T9
FYTTD1
42
LLPS-Mam-4496
ENSMMUG00000013614.3
F7GN18
GLI3
43
LLPS-Mam-1525
ENSMMUG00000001980.3
H9EPM1
GSK3B
44
LLPS-Mam-0436
ENSMMUG00000021002.3
F7HKJ2
HIF1A
45
LLPS-Mam-2848
ENSMMUG00000000215.3
F6XI77
HIF3A
46
LLPS-Mam-2561
ENSMMUG00000002481.3
F7HGU8
HIPK2
47
LLPS-Mam-1428
ENSMMUG00000003619.3
I2CYL4
HNRNPA2B1
48
LLPS-Mam-0839
ENSMMUG00000018871.3
F6VJH6
HNRNPK
49
LLPS-Mam-4169
ENSMMUG00000013707.3
F6S537
HSPH1
50
LLPS-Mam-0972
ENSMMUG00000008149.3
F7HE92
ILF2
51
LLPS-Mam-0004
ENSMMUG00000014673.3
F7FLC1
ILF3
52
LLPS-Mam-3490
ENSMMUG00000013884.3
F6R585
IVNS1ABP
53
LLPS-Mam-0124
ENSMMUG00000018256.3
F7DZP0
KPNA2
54
LLPS-Mam-3244
ENSMMUG00000012989.3
F7HT55
LOC711588
55
LLPS-Mam-2054
ENSMMUG00000000596.3
G7NQC4
LUC7L
56
LLPS-Mam-4370
ENSMMUG00000002096.3
F6WHT9
NAGK
57
LLPS-Mam-3901
ENSMMUG00000012382.3
F7EB44
NKAP
58
LLPS-Mam-0629
ENSMMUG00000020481.3
F6UC36
NONO
59
LLPS-Mam-1666
ENSMMUG00000003819.3
A0A1D5RG47
NOSIP
60
LLPS-Mam-4485
ENSMMUG00000014111.3
F6RLS9
NR5A1
61
LLPS-Mam-3250
ENSMMUG00000012121.3
F7H8Q9
NSRP1
62
LLPS-Mam-2489
ENSMMUG00000018584.3
F6YEL3
NUAK2
63
LLPS-Mam-2306
ENSMMUG00000000188.3
A0A1D5QJC3
NXF1
64
LLPS-Mam-0055
ENSMMUG00000006117.3
F7GWH3
OGG1
65
LLPS-Mam-0684
ENSMMUG00000001105.3
F6PW20
P2RY12
66
LLPS-Mam-0465
ENSMMUG00000038295.1
G7NA92
PCBP1
67
LLPS-Mam-3888
ENSMMUG00000021301.3
H9ETC2
PLRG1
68
LLPS-Mam-2782
ENSMMUG00000020512.3
F7B2X6
PPIG
69
LLPS-Mam-4110
ENSMMUG00000014530.3
G7ND29
PRPF19
70
LLPS-Mam-2454
ENSMMUG00000004820.3
G7NHM1
PRPF8
71
LLPS-Mam-0285
ENSMMUG00000003509.3
A0A1D5RHS9
PSMA3
72
LLPS-Mam-2603
ENSMMUG00000020262.3
F6XYS7
PSPC1
73
LLPS-Mam-2400
ENSMMUG00000016450.3
A0A1D5QCD7
PTBP1
74
LLPS-Mam-2180
ENSMMUG00000006479.3
F7HBI2
RAPGEF1
75
LLPS-Mam-2168
ENSMMUG00000015152.3
F6UDK4
RBM17
76
LLPS-Mam-0690
ENSMMUG00000018381.3
F7H1B7
RBM23
77
LLPS-Mam-0591
ENSMMUG00000008389.3
F6TRP5
RBMX2
78
LLPS-Mam-1889
ENSMMUG00000007940.3
F7HSW3
RNF151
79
LLPS-Mam-1936
ENSMMUG00000006289.3
H9EQN2
SARNP
80
LLPS-Mam-1414
ENSMMUG00000022606.3
A0A1D5Q0P9
SF1
81
LLPS-Mam-1729
ENSMMUG00000005547.3
F7GEU6
SF3A1
82
LLPS-Mam-0098
ENSMMUG00000010111.3
A0A1D5QAG2
SF3A2
83
LLPS-Mam-1703
ENSMMUG00000023199.3
G7MFY2
SF3A3
84
LLPS-Mam-1587
ENSMMUG00000022430.3
A0A1D5QES7
SF3B1
85
LLPS-Mam-0908
ENSMMUG00000019154.3
F6SSM0
SFPQ
86
LLPS-Mam-2774
ENSMMUG00000015455.3
A0A1D5Q1C9
SMAD3
87
LLPS-Mam-1362
ENSMMUG00000023261.3
I0FQ43
SNRNP200
88
LLPS-Mam-3128
ENSMMUG00000008411.3
H9H391
SNRNP35
89
LLPS-Mam-0152
ENSMMUG00000004928.3
H9FYT4
SNRNP70
90
LLPS-Mam-3763
ENSMMUG00000022024.3
F7GVF3
SNRPA
91
LLPS-Mam-1366
ENSMMUG00000011826.3
F7H780
SNRPA1
92
LLPS-Mam-0138
ENSMMUG00000040489.1
F7GH69
SNRPB2
93
LLPS-Mam-0162
ENSMMUG00000005511.3
F7GTY5
SON
94
LLPS-Mam-3945
ENSMMUG00000018752.3
F6XVE8
SPOP
95
LLPS-Mam-1343
ENSMMUG00000018858.3
A0A1D5RIX1
SRRM2
96
LLPS-Mam-3610
ENSMMUG00000004725.3
F6R520
SRSF1
97
LLPS-Mam-3326
ENSMMUG00000013784.3
H9H3N2
SRSF10
98
LLPS-Mam-2585
ENSMMUG00000013852.3
F6RMA5
SRSF11
99
LLPS-Mam-2082
ENSMMUG00000022413.3
F7DBT5
SRSF2
100
LLPS-Mam-0043
ENSMMUG00000014306.3
F7BSI5
SRSF3
101
LLPS-Mam-3130
ENSMMUG00000007110.2
F7DYE3
SRSF4
102
LLPS-Mam-1013
ENSMMUG00000011025.3
F7GQT1
SRSF7
103
LLPS-Mam-0418
ENSMMUG00000010707.3
F7G8G5
STAT3
104
LLPS-Mam-0832
ENSMMUG00000005240.3
A0A1D5RJ75
SUMO1
105
LLPS-Mam-0331
ENSMMUG00000001304.3
A0A1D5QUK7
TGFBR1
106
LLPS-Mam-2014
ENSMMUG00000001185.3
F6TT71
TRA2B
107
LLPS-Mam-2253
ENSMMUG00000019656.3
F7CU83
TTC14
108
LLPS-Mam-1110
ENSMMUG00000004810.3
F6RZR0
U2AF2
109
LLPS-Mam-0811
ENSMMUG00000002775.3
I2CTB0
U2SURP
110
LLPS-Mam-1036
ENSMMUG00000006941.3
F7E1H2
XPO1
111
LLPS-Mam-1038
ENSMMUG00000002265.3
A0A1D5QQM9
YTHDC1
112
LLPS-Mam-0154
ENSMMUG00000010539.3
F7D104
ZC3H11A
113
LLPS-Mam-4043
ENSMMUG00000001547.3
F7G5J9
ZNF106
114
LLPS-Mam-4390
ENSMMUG00000014251.3
A0A1D5QB42
ZNF131
115
LLPS-Mam-3023
ENSMMUG00000001122.3
A0A1D5Q243
ZNF688