Lepisosteus oculatus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 100 genes.  Reviewed (0 or Unreviewed (100

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Leo-0010
ENSLOCG00000001702.1
W5M0R2
2
LLPS-Leo-0113
ENSLOCG00000015992.1
W5NGD3
3
LLPS-Leo-0138
ENSLOCG00000012519.1
W5N454
4
LLPS-Leo-0163
ENSLOCG00000013897.1
W5N932
5
LLPS-Leo-0194
ENSLOCG00000015659.1
W5NF67
6
LLPS-Leo-0205
ENSLOCG00000004202.1
W5M9G1
7
LLPS-Leo-0213
ENSLOCG00000001067.1
W5LYL9
8
LLPS-Leo-0261
ENSLOCG00000007877.1
W5MMF5
9
LLPS-Leo-0263
ENSLOCG00000009558.1
W5MTH2
10
LLPS-Leo-0352
ENSLOCG00000003045.1
W5M5C8
11
LLPS-Leo-0364
ENSLOCG00000010169.1
W5MVP0
12
LLPS-Leo-0385
ENSLOCG00000011021.1
W5MYR7
13
LLPS-Leo-0440
ENSLOCG00000005409.1
W5MDT0
14
LLPS-Leo-0453
ENSLOCG00000014739.1
W5NBY9
15
LLPS-Leo-0469
ENSLOCG00000011252.1
W5MZL2
16
LLPS-Leo-0483
ENSLOCG00000008405.1
W5MPA5
17
LLPS-Leo-0500
ENSLOCG00000002262.1
W5M2P6
18
LLPS-Leo-0502
ENSLOCG00000008430.1
W5MPF0
19
LLPS-Leo-0563
ENSLOCG00000011688.1
W5N154
20
LLPS-Leo-0599
ENSLOCG00000014084.1
W5N9P6
21
LLPS-Leo-0605
ENSLOCG00000013365.1
W5N764
22
LLPS-Leo-0653
ENSLOCG00000013329.1
W5N725
23
LLPS-Leo-0677
ENSLOCG00000009617.1
W5MTP3
24
LLPS-Leo-0828
ENSLOCG00000001975.1
W5M1M9
25
LLPS-Leo-0898
ENSLOCG00000005513.1
W5ME47
26
LLPS-Leo-0900
ENSLOCG00000010673.1
W5MXH4
27
LLPS-Leo-0980
ENSLOCG00000011932.1
W5N215
28
LLPS-Leo-0994
ENSLOCG00000005835.1
W5MF86
29
LLPS-Leo-1018
ENSLOCG00000000616.1
W5M8W8
30
LLPS-Leo-1030
ENSLOCG00000010711.1
W5MXM2
31
LLPS-Leo-1059
ENSLOCG00000006476.1
W5MHG4
32
LLPS-Leo-1064
ENSLOCG00000000796.1
W5LXQ4
33
LLPS-Leo-1092
ENSLOCG00000013518.1
W5N7R0
34
LLPS-Leo-1148
ENSLOCG00000010471.1
W5MWS8
35
LLPS-Leo-1164
ENSLOCG00000010236.1
W5MVX5
36
LLPS-Leo-1207
ENSLOCG00000010146.1
W5MVL2
37
LLPS-Leo-1225
ENSLOCG00000018154.1
W5NNP6
38
LLPS-Leo-1257
ENSLOCG00000000432.1
W5LWG5
39
LLPS-Leo-1306
ENSLOCG00000017172.1
W5NKR6
40
LLPS-Leo-1335
ENSLOCG00000012101.1
W5N2N1
41
LLPS-Leo-1358
ENSLOCG00000013879.1
W5N908
42
LLPS-Leo-1361
ENSLOCG00000004619.1
W5MAY1
43
LLPS-Leo-1373
ENSLOCG00000005994.1
W5MFT3
44
LLPS-Leo-1412
ENSLOCG00000016095.1
W5NGS6
45
LLPS-Leo-1437
ENSLOCG00000014787.1
W5NC51
46
LLPS-Leo-1450
ENSLOCG00000005311.1
W5MDD9
47
LLPS-Leo-1551
ENSLOCG00000015198.1
W5NDJ9
48
LLPS-Leo-1561
ENSLOCG00000010269.1
W5MW16
49
LLPS-Leo-1568
ENSLOCG00000001069.1
W5LYK0
50
LLPS-Leo-1616
ENSLOCG00000007999.1
W5MMV2
51
LLPS-Leo-1691
ENSLOCG00000006077.1
W5MG31
52
LLPS-Leo-1703
ENSLOCG00000010843.1
W5MY30
53
LLPS-Leo-1792
ENSLOCG00000007035.1
W5MJG8
54
LLPS-Leo-1863
ENSLOCG00000003621.1
W5M7E1
55
LLPS-Leo-1868
ENSLOCG00000006654.1
W5MI23
56
LLPS-Leo-1881
ENSLOCG00000010832.1
W5MY18
57
LLPS-Leo-1954
ENSLOCG00000000380.1
W5LWA8
58
LLPS-Leo-1962
ENSLOCG00000007600.1
W5MLF8
59
LLPS-Leo-1965
ENSLOCG00000014515.1
W5NB54
60
LLPS-Leo-1967
ENSLOCG00000008117.1
W5MN98
61
LLPS-Leo-1999
ENSLOCG00000004044.1
W5M8W7
62
LLPS-Leo-2094
ENSLOCG00000003314.1
W5M6B5
63
LLPS-Leo-2151
ENSLOCG00000003273.1
W5M667
64
LLPS-Leo-2231
ENSLOCG00000006600.1
W5MHW0
65
LLPS-Leo-2274
ENSLOCG00000001731.1
W5M0U7
66
LLPS-Leo-2323
ENSLOCG00000006117.1
W5MG87
67
LLPS-Leo-2383
ENSLOCG00000009935.1
W5MUT8
68
LLPS-Leo-2390
ENSLOCG00000002491.1
W5M3H7
69
LLPS-Leo-2431
ENSLOCG00000007828.1
W5MMC5
70
LLPS-Leo-2471
ENSLOCG00000012514.1
W5N463
71
LLPS-Leo-2479
ENSLOCG00000012687.1
W5N4Q2
72
LLPS-Leo-2521
ENSLOCG00000014566.1
W5NBC0
73
LLPS-Leo-2548
ENSLOCG00000006883.1
W5MIW5
74
LLPS-Leo-2553
ENSLOCG00000011945.1
W5N231
75
LLPS-Leo-2606
ENSLOCG00000005685.1
W5MEQ6
76
LLPS-Leo-2608
ENSLOCG00000012721.1
W5N4U8
77
LLPS-Leo-2661
ENSLOCG00000007559.1
W5MLB4
78
LLPS-Leo-2690
ENSLOCG00000008123.1
W5MNA9
79
LLPS-Leo-2699
ENSLOCG00000011771.1
W5N1G8
80
LLPS-Leo-2711
ENSLOCG00000008251.1
W5MNQ5
81
LLPS-Leo-2727
ENSLOCG00000015811.1
W5NFQ7
82
LLPS-Leo-2967
ENSLOCG00000004725.1
W5MBA2
83
LLPS-Leo-3007
ENSLOCG00000011983.1
W5N286
84
LLPS-Leo-3043
ENSLOCG00000016911.1
W5NJV8
85
LLPS-Leo-3114
ENSLOCG00000015778.1
W5NFL6
86
LLPS-Leo-3116
ENSLOCG00000002311.1
W5M2W3
87
LLPS-Leo-3400
ENSLOCG00000003899.1
W5M8F5
88
LLPS-Leo-3505
ENSLOCG00000001362.1
W5LZI6
89
LLPS-Leo-3747
ENSLOCG00000004322.1
W5M9X1
90
LLPS-Leo-3785
ENSLOCG00000009368.1
W5MSR8
91
LLPS-Leo-3850
ENSLOCG00000008879.1
W5MQZ6
92
LLPS-Leo-0036
ENSLOCG00000007766.1
W5MM32
AGO2
93
LLPS-Leo-3096
ENSLOCG00000003457.1
W5M6U3
ANXA10
94
LLPS-Leo-1823
ENSLOCG00000005617.1
W5MEH0
ARL6IP4
95
LLPS-Leo-3178
ENSLOCG00000014985.1
W5NCV1
FGFR1
96
LLPS-Leo-2086
ENSLOCG00000008490.1
W5MPM1
FYTTD1
97
LLPS-Leo-1058
ENSLOCG00000001758.1
W5M0W9
RNPS1
98
LLPS-Leo-2150
ENSLOCG00000014661.1
W5NBN4
SNRPA
99
LLPS-Leo-0590
ENSLOCG00000002785.1
W5M4G5
SRRM1
100
LLPS-Leo-3682
ENSLOCG00000013469.1
W5N7L0
ZNF106