Drosophila melanogaster      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 65 genes.  Reviewed (1 or Unreviewed (64

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Drm-0116
FBgn0003371
P18431
sgg
2
LLPS-Drm-0065
FBgn0035253
A8JNI2
anon-EST:fe1A7
3
LLPS-Drm-1256
FBgn0040394
Q9W526
anon-WO03040301.211
4
LLPS-Drm-1462
FBgn0037770
Q9VH48
Art4
5
LLPS-Drm-1126
FBgn0011300
A1Z7L8
babo
6
LLPS-Drm-0743
FBgn0039558
Q9VAY6
BCAS2
7
LLPS-Drm-2211
FBgn0259228
O77086
C3G
8
LLPS-Drm-1964
FBgn0022800
Q9VBW3
Cad96Ca
9
LLPS-Drm-0418
FBgn0265574
Q9W0R0
Cdc5
10
LLPS-Drm-1433
FBgn0263237
Q24216
Cdk7
11
LLPS-Drm-0359
FBgn0019949
O17432
Cdk9
12
LLPS-Drm-1060
FBgn0038046
Q9VG73
CG5641
13
LLPS-Drm-0867
FBgn0039488
Q9VB74
CG6066
14
LLPS-Drm-0894
FBgn0030915
Q9VWV8
CG6179
15
LLPS-Drm-1098
FBgn0037855
Q9VGU5
CG6621
16
LLPS-Drm-1467
FBgn0015024
P54367
CkIalpha
17
LLPS-Drm-1062
FBgn0032822
Q9VIS0
DmelCG10466
18
LLPS-Drm-0713
FBgn0037644
Q9VHJ7
DmelCG11964
19
LLPS-Drm-2118
FBgn0030474
Q9VYE3
DmelCG15747
20
LLPS-Drm-0989
FBgn0037882
Q9VGR0
DmelCG17187
21
LLPS-Drm-0870
FBgn0039149
Q9VCD4
DmelCG18428
22
LLPS-Drm-1513
FBgn0035981
Q9VSW7
DmelCG4452
23
LLPS-Drm-1797
FBgn0038321
Q9VF86
DmelCG6218
24
LLPS-Drm-1642
FBgn0036734
Q9VVI1
DmelCG7564
25
LLPS-Drm-0774
FBgn0035254
Q9W0A9
DmelCG7974
26
LLPS-Drm-1043
FBgn0034572
Q9W2N6
DmelCG9346
27
LLPS-Drm-1672
FBgn0011586
Q24337
e(r)
28
LLPS-Drm-0070
FBgn0020497
Q9TVM2
emb
29
LLPS-Drm-0827
FBgn0038827
Q8MYL1
Fancd2
30
LLPS-Drm-0310
FBgn0033354
A1Z7L1
FANCI
31
LLPS-Drm-0033
FBgn0011224
A0A0B4K6W9
heph
32
LLPS-Drm-0768
FBgn0035142
Q9W0Q1
Hipk
33
LLPS-Drm-0866
FBgn0267791
A1ZBW0
HnRNP-K
34
LLPS-Drm-0092
FBgn0263599
Q9VUV9
l(3)72Ab
35
LLPS-Drm-0567
FBgn0004367
Q9VXG8
mei-41
36
LLPS-Drm-1800
FBgn0014366
O46106
noi
37
LLPS-Drm-2087
FBgn0004227
Q04047
nonA
38
LLPS-Drm-0268
FBgn0027864
Q9V3I8
Ogg1
39
LLPS-Drm-0647
FBgn0005648
Q7KNF2
Pabp2
40
LLPS-Drm-1613
FBgn0039861
Q9V9V7
pasha
41
LLPS-Drm-0917
FBgn0037737
A8JQW3
Pnn
42
LLPS-Drm-2187
FBgn0023175
Q9V5C6
Prosalpha7
43
LLPS-Drm-1426
FBgn0261119
Q7KLW9
Prp19
44
LLPS-Drm-1047
FBgn0030631
Q9VXW2
Prp5
45
LLPS-Drm-1557
FBgn0033688
A1Z8U0
Prp8
46
LLPS-Drm-0578
FBgn0264493
Q9VFP2
rdx
47
LLPS-Drm-2123
FBgn0010774
Q9V3E7
Ref1
48
LLPS-Drm-1366
FBgn0037707
Q9VHC0
RnpS1
49
LLPS-Drm-1144
FBgn0265298
Q9V3T8
SC35
50
LLPS-Drm-0643
FBgn0283477
Q9V3W7
SF2
51
LLPS-Drm-1385
FBgn0266917
Q9VEP9
Sf3a1
52
LLPS-Drm-0902
FBgn0036314
Q9VU15
Sf3a2
53
LLPS-Drm-1551
FBgn0031266
Q9VPR5
Sf3b1
54
LLPS-Drm-0349
FBgn0266411
Q24167
sima
55
LLPS-Drm-0599
FBgn0037716
Q9VHB0
Son
56
LLPS-Drm-0640
FBgn0086683
Q7PL83
Spf45
57
LLPS-Drm-0110
FBgn0036340
Q9VU43
SRm160
58
LLPS-Drm-0323
FBgn0030365
Q9VYQ9
Tango4
59
LLPS-Drm-0164
FBgn0003742
P19018
tra2
60
LLPS-Drm-0166
FBgn0033210
Q9V4Q8
U2A
61
LLPS-Drm-1737
FBgn0017457
Q94535
U2af38
62
LLPS-Drm-0039
FBgn0005411
Q24562
U2af50
63
LLPS-Drm-0222
FBgn0028554
Q9V3V0
x16
64
LLPS-Drm-2230
FBgn0010772
Q7KTT0
Xe7
65
LLPS-Drm-0427
FBgn0027616
Q9VZQ1
Ythdc1