Dipodomys ordii      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 112 genes.  Reviewed (0 or Unreviewed (112

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Dio-0646
ENSDORG00000004985.2
2
LLPS-Dio-1803
ENSDORG00000029685.1
3
LLPS-Dio-1607
ENSDORG00000011242.2
A0A1S3FXC0
Ago2
4
LLPS-Dio-1078
ENSDORG00000025849.1
A0A1S3GKL9
Alyref
5
LLPS-Dio-0634
ENSDORG00000016695.2
A0A1S3FXT6
Anxa10
6
LLPS-Dio-0598
ENSDORG00000015726.2
A0A1S3ENY9
Anxa2
7
LLPS-Dio-0707
ENSDORG00000023896.1
A0A1S3FPL4
Arl6ip4
8
LLPS-Dio-3298
ENSDORG00000000389.2
A0A1S3GAR1
Atr
9
LLPS-Dio-2249
ENSDORG00000014220.2
A0A1S3FUG7
Bcas2
10
LLPS-Dio-3449
ENSDORG00000013395.2
A0A1S3GKJ5
Carm1
11
LLPS-Dio-3705
ENSDORG00000008224.2
A0A1S3F4K3
Ccnl1
12
LLPS-Dio-1175
ENSDORG00000009131.2
A0A1S3FDY9
Cdc5l
13
LLPS-Dio-1261
ENSDORG00000026411.1
A0A1S3F3R6
Cdk7
14
LLPS-Dio-1346
ENSDORG00000013328.2
A0A1S3FLT2
Cdk9
15
LLPS-Dio-3828
ENSDORG00000001295.2
A0A1S3GFE6
Cdkl5
16
LLPS-Dio-0274
ENSDORG00000011628.2
A0A1S3F4E0
Clk2
17
LLPS-Dio-0253
ENSDORG00000010255.2
A0A1S3EQ96
Ctnnbl1
18
LLPS-Dio-1579
ENSDORG00000005447.2
A0A1S3F5W0
Ddx46
19
LLPS-Dio-1446
ENSDORG00000028551.1
A0A1S3GDY6
Dgcr8
20
LLPS-Dio-1785
ENSDORG00000015210.2
A0A1S3GLM4
Dnajb1
21
LLPS-Dio-1544
ENSDORG00000000579.2
A0A1S3EMR0
Dnajc17
22
LLPS-Dio-3508
ENSDORG00000011083.2
A0A1S3F8C6
Dyrk3
23
LLPS-Dio-0178
ENSDORG00000000490.2
A0A1S3FRQ7
Egf
24
LLPS-Dio-1490
ENSDORG00000026008.1
A0A1S3F7R5
Erh
25
LLPS-Dio-1429
ENSDORG00000016404.2
A0A1S3GX81
Ezh1
26
LLPS-Dio-2976
ENSDORG00000004977.2
A0A1S3EKS7
Fam76b
27
LLPS-Dio-1142
ENSDORG00000026080.1
A0A1S3EQR9
Fancd2
28
LLPS-Dio-2180
ENSDORG00000014135.2
A0A1S3EVV8
Fanci
29
LLPS-Dio-1344
ENSDORG00000010081.2
A0A1S3FSK4
Fbxl18
30
LLPS-Dio-1971
ENSDORG00000011606.2
A0A1S3FKE3
Frmd8
31
LLPS-Dio-0100
ENSDORG00000014218.2
A0A1S3ERL6
Fus
32
LLPS-Dio-3339
ENSDORG00000011686.2
A0A1S3FEG9
Fyttd1
33
LLPS-Dio-3637
ENSDORG00000001532.2
A0A1S3GJQ4
Gli3
34
LLPS-Dio-0126
ENSDORG00000023434.1
A0A1S3FFR6
Gsk3b
35
LLPS-Dio-0223
ENSDORG00000004664.2
A0A1S3GJC7
Hif3a
36
LLPS-Dio-1730
ENSDORG00000000634.2
A0A1S3FLC6
Hipk2
37
LLPS-Dio-1072
ENSDORG00000027821.1
A0A1S3GGH5
Hnrnpa1
38
LLPS-Dio-0268
ENSDORG00000005482.2
A0A1S3FV39
Hnrnpa2b1
39
LLPS-Dio-0090
ENSDORG00000016024.2
A0A1S3GEV2
Hnrnpk
40
LLPS-Dio-1280
ENSDORG00000007966.2
A0A1S3F4C1
Ilf2
41
LLPS-Dio-0911
ENSDORG00000015231.2
A0A1S3GLA3
Ilf3
42
LLPS-Dio-3401
ENSDORG00000010533.2
A0A1S3FN15
Ivns1abp
43
LLPS-Dio-2455
ENSDORG00000012160.2
A0A1S3H041
Kpna2
44
LLPS-Dio-3814
ENSDORG00000025772.1
A0A1S3EW83
LOC105982582
45
LLPS-Dio-2625
ENSDORG00000016711.2
A0A1S3FFZ1
LOC105988203
46
LLPS-Dio-0412
ENSDORG00000000781.2
A0A1S3FL31
LOC105989319
47
LLPS-Dio-1188
ENSDORG00000029146.1
A0A1S3FKJ7
LOC105989531
48
LLPS-Dio-0069
ENSDORG00000028394.1
A0A1S3GAI7
LOC105996339
49
LLPS-Dio-2290
ENSDORG00000024117.1
A0A1S3GGL5
LOC105997857
50
LLPS-Dio-1043
ENSDORG00000023632.1
A0A1S3GWC7
LOC106002211
51
LLPS-Dio-0835
ENSDORG00000010650.2
A0A1S3ET05
Luc7l
52
LLPS-Dio-0130
ENSDORG00000005085.2
A0A1S3FNT6
Nagk
53
LLPS-Dio-0005
ENSDORG00000009294.2
A0A1S3GGI3
Nono
54
LLPS-Dio-1233
ENSDORG00000001351.2
A0A1S3G4F5
Nosip
55
LLPS-Dio-0511
ENSDORG00000028222.1
A0A1S3FJL2
Nr5a1
56
LLPS-Dio-3634
ENSDORG00000010440.2
A0A1S3F841
Nsrp1
57
LLPS-Dio-2008
ENSDORG00000013111.2
A0A1S3F9M1
Nuak2
58
LLPS-Dio-0293
ENSDORG00000011013.2
A0A1S3EPE5
Ogg1
59
LLPS-Dio-1910
ENSDORG00000016443.2
A0A1S3G972
P2ry12
60
LLPS-Dio-0936
ENSDORG00000028966.1
A0A1S3FWA9
Pabpn1
61
LLPS-Dio-2727
ENSDORG00000008216.2
A0A1S3FQ74
Pcbp1
62
LLPS-Dio-1898
ENSDORG00000016294.2
A0A1S3GB49
Plrg1
63
LLPS-Dio-3842
ENSDORG00000015561.2
A0A1S3GA70
Ppig
64
LLPS-Dio-0294
ENSDORG00000006906.2
A0A1S3G7G0
Prpf19
65
LLPS-Dio-2061
ENSDORG00000006185.2
A0A1S3F591
Prpf8
66
LLPS-Dio-4368
ENSDORG00000026413.1
A0A1S3F6X0
Psma3
67
LLPS-Dio-1395
ENSDORG00000016050.2
A0A1S3EKJ8
Pspc1
68
LLPS-Dio-0886
ENSDORG00000002835.2
A0A1S3FNW9
Ptbp1
69
LLPS-Dio-0742
ENSDORG00000003580.2
A0A1S3FLW8
Rapgef1
70
LLPS-Dio-1976
ENSDORG00000007028.2
A0A1S3EJZ0
Rbm17
71
LLPS-Dio-0918
ENSDORG00000004926.2
A0A1S3FYI5
Rbm23
72
LLPS-Dio-3858
ENSDORG00000028737.1
A0A1S3FBL2
Rbmx2
73
LLPS-Dio-2164
ENSDORG00000013376.2
A0A1S3F3H9
Rfwd2
74
LLPS-Dio-2546
ENSDORG00000007376.2
A0A1S3ETF7
Rnf151
75
LLPS-Dio-0535
ENSDORG00000001755.2
A0A1S3ERW0
Rnps1
76
LLPS-Dio-2829
ENSDORG00000001065.2
A0A1S3FIS0
Sarnp
77
LLPS-Dio-3666
ENSDORG00000016334.2
A0A1S3FKT6
Sf1
78
LLPS-Dio-0902
ENSDORG00000005613.2
A0A1S3EZS3
Sf3a1
79
LLPS-Dio-2212
ENSDORG00000014445.2
A0A1S3FNA5
Sf3a2
80
LLPS-Dio-2651
ENSDORG00000008798.2
A0A1S3F8I3
Sf3a3
81
LLPS-Dio-0885
ENSDORG00000002399.2
A0A1S3EXL7
Sf3b1
82
LLPS-Dio-0965
ENSDORG00000008109.2
A0A1S3GNG6
Sfpq
83
LLPS-Dio-0310
ENSDORG00000029949.1
A0A1S3EP13
Smad3
84
LLPS-Dio-0439
ENSDORG00000005861.2
A0A1S3FF03
Snrnp200
85
LLPS-Dio-1611
ENSDORG00000001859.2
A0A1S3FPQ9
Snrnp35
86
LLPS-Dio-1557
ENSDORG00000010228.2
A0A1S3G3B8
Snrnp70
87
LLPS-Dio-3552
ENSDORG00000006711.2
A0A1S3GHG8
Snrpa
88
LLPS-Dio-1598
ENSDORG00000000924.2
A0A1S3EUL3
Snrpa1
89
LLPS-Dio-2211
ENSDORG00000027524.1
A0A1S3ERB5
Snrpb2
90
LLPS-Dio-1123
ENSDORG00000028617.1
A0A1S3G278
Son
91
LLPS-Dio-0154
ENSDORG00000001680.2
A0A1S3GZ44
Spop
92
LLPS-Dio-2494
ENSDORG00000028601.1
A0A1S3GI00
Srrm1
93
LLPS-Dio-2057
ENSDORG00000027028.1
A0A1S3ERB7
Srrm2
94
LLPS-Dio-3799
ENSDORG00000015082.2
A0A1S3GYL4
Srsf1
95
LLPS-Dio-3065
ENSDORG00000024574.1
A0A1S3GNC6
Srsf10
96
LLPS-Dio-2346
ENSDORG00000000669.2
A0A1S3FHG7
Srsf11
97
LLPS-Dio-1029
ENSDORG00000014460.2
A0A1S3GWM9
Srsf2
98
LLPS-Dio-1371
ENSDORG00000012283.2
A0A1S3G8C6
Srsf3
99
LLPS-Dio-1977
ENSDORG00000002459.2
A0A1S3GP30
Srsf4
100
LLPS-Dio-0734
ENSDORG00000008616.2
A0A1S3FBT7
Srsf7
101
LLPS-Dio-1407
ENSDORG00000013162.2
A0A1S3F198
Srsf9
102
LLPS-Dio-1489
ENSDORG00000000308.2
A0A1S3GYR3
Stat3
103
LLPS-Dio-3293
ENSDORG00000005067.2
A0A1S3FQQ6
Tgfbr1
104
LLPS-Dio-2206
ENSDORG00000026038.1
A0A1S3GN52
Tra2b
105
LLPS-Dio-0748
ENSDORG00000002727.2
A0A1S3GLN9
Ttc14
106
LLPS-Dio-0633
ENSDORG00000003250.2
A0A1S3GP14
U2af2
107
LLPS-Dio-0408
ENSDORG00000005201.2
A0A1S3G943
U2surp
108
LLPS-Dio-1469
ENSDORG00000013050.2
A0A1S3FPL0
Xpo1
109
LLPS-Dio-1761
ENSDORG00000013045.2
A0A1S3EJ29
Ythdc1
110
LLPS-Dio-1453
ENSDORG00000024334.1
A0A1S3EM54
Znf106
111
LLPS-Dio-4036
ENSDORG00000028178.1
A0A1S3FDE6
Znf131
112
LLPS-Dio-2016
ENSDORG00000030104.1
A0A1S3ESC2
Znf688