Danio rerio      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 102 genes.  Reviewed (0 or Unreviewed (102

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Dar-2491
ENSDARG00000114730.1
A0A2R8QHE0
2
LLPS-Dar-1445
ENSDARG00000061268.6
E7EXY4
ago2
3
LLPS-Dar-3255
ENSDARG00000104768.3
Q6PE21
akap17a
4
LLPS-Dar-0677
ENSDARG00000077732.4
A0A0R4IU36
alyref
5
LLPS-Dar-0244
ENSDARG00000003216.7
A0A2R8QQY8
anxa2a
6
LLPS-Dar-1148
ENSDARG00000116805.1
Q502P0
arl6ip4
7
LLPS-Dar-0619
ENSDARG00000079625.6
F1QMM7
atr
8
LLPS-Dar-2197
ENSDARG00000043631.7
Q5RKQ0
bcas2
9
LLPS-Dar-1618
ENSDARG00000018698.10
Q6DC04
carm1
10
LLPS-Dar-1885
ENSDARG00000029911.7
Q1ECZ4
casc3
11
LLPS-Dar-1239
ENSDARG00000055124.7
A2BID3
ccnl1a
12
LLPS-Dar-2185
ENSDARG00000043797.8
E9QIC1
cdc5l
13
LLPS-Dar-0376
ENSDARG00000087554.3
Q7T3L7
cdk1
14
LLPS-Dar-0031
ENSDARG00000051916.6
Q2V6H0
cdk7
15
LLPS-Dar-2196
ENSDARG00000044811.9
Q7T3L5
cdk9
16
LLPS-Dar-1392
ENSDARG00000015240.11
B9X2H6
cdkl5
17
LLPS-Dar-1085
ENSDARG00000062954.8
Q1L8U5
clk2a
18
LLPS-Dar-2365
ENSDARG00000079329.4
B0UY40
cop1
19
LLPS-Dar-2895
ENSDARG00000052674.7
Q8JHE0
csnk1a1
20
LLPS-Dar-0543
ENSDARG00000011958.10
Q6P4V4
ctnnbl1
21
LLPS-Dar-3636
ENSDARG00000036069.6
Q7SXU7
ddx39b
22
LLPS-Dar-2328
ENSDARG00000113898.1
A2BEG3
dgcr8
23
LLPS-Dar-0963
ENSDARG00000002220.8
Q5XJ46
DKEY-226M8.1
24
LLPS-Dar-2700
ENSDARG00000099383.2
A0A0R4IYH3
dnajb1a
25
LLPS-Dar-0579
ENSDARG00000104959.3
A0A0R4ILG8
dnajc17
26
LLPS-Dar-2645
ENSDARG00000052739.8
A0A140LGI0
egf
27
LLPS-Dar-1755
ENSDARG00000032866.7
Q98874
erh
28
LLPS-Dar-3638
ENSDARG00000012432.8
Q6PBM7
fam76b
29
LLPS-Dar-0025
ENSDARG00000060830.7
Q1LVV0
fam83h
30
LLPS-Dar-1027
ENSDARG00000053574.8
B3DJT4
fancd2
31
LLPS-Dar-3158
ENSDARG00000026224.11
F1R3B9
fanci
32
LLPS-Dar-2934
ENSDARG00000113264.1
A0A2R8S0B5
fbxl18
33
LLPS-Dar-2505
ENSDARG00000011027.12
Q90Z00
fgfr1a
34
LLPS-Dar-3582
ENSDARG00000073696.5
E7F221
frmd8
35
LLPS-Dar-2577
ENSDARG00000052131.8
F1QSH8
gli3
36
LLPS-Dar-0474
ENSDARG00000017803.9
Q9YH60
gsk3b
37
LLPS-Dar-3267
ENSDARG00000034293.9
Q6EHI4
hif1ab
38
LLPS-Dar-3237
ENSDARG00000100826.2
A0A0R4IBR4
hif1al
39
LLPS-Dar-3616
ENSDARG00000042518.8
F1Q4N0
hipk2
40
LLPS-Dar-0145
ENSDARG00000007034.12
B8JLJ8
hnrpkl
41
LLPS-Dar-1463
ENSDARG00000014591.8
Q6NZ06
ilf2
42
LLPS-Dar-0529
ENSDARG00000105177.2
Q6NXA4
ilf3
43
LLPS-Dar-1305
ENSDARG00000031100.9
Q5RG82
ivns1abpa
44
LLPS-Dar-0438
ENSDARG00000038066.9
F1QG82
kpna2
45
LLPS-Dar-1460
ENSDARG00000055903.7
F1R8J8
luc7l
46
LLPS-Dar-3468
ENSDARG00000099116.3
A0A0R4IUJ5
nagk
47
LLPS-Dar-0715
ENSDARG00000020482.10
Q802Z5
nono
48
LLPS-Dar-2704
ENSDARG00000037958.9
Q5U3S7
nosip
49
LLPS-Dar-0135
ENSDARG00000063661.7
Q1MTK5
nuak2
50
LLPS-Dar-0923
ENSDARG00000060002.9
B0R135
ogg1
51
LLPS-Dar-2335
ENSDARG00000069945.6
E7F2G6
p2ry12
52
LLPS-Dar-1988
ENSDARG00000045373.8
Q6NUT4
pabpn1
53
LLPS-Dar-2848
ENSDARG00000037283.9
Q5U3B5
plrg1
54
LLPS-Dar-0635
ENSDARG00000015851.7
F1QT45
pnn
55
LLPS-Dar-1903
ENSDARG00000015239.10
Q7ZV92
prpf19
56
LLPS-Dar-0018
ENSDARG00000026180.10
A0A0R4J8E6
prpf8
57
LLPS-Dar-2957
ENSDARG00000086618.3
Q4V918
psma3
58
LLPS-Dar-0629
ENSDARG00000006621.11
Q1JPY8
pspc1
59
LLPS-Dar-2734
ENSDARG00000019362.10
Q503D3
ptbp1a
60
LLPS-Dar-1776
ENSDARG00000015971.14
E7F4B2
rapgef1b
61
LLPS-Dar-1710
ENSDARG00000031346.11
Q7ZVN6
rbm17
62
LLPS-Dar-1382
ENSDARG00000044380.9
F1RAH8
rbmx2
63
LLPS-Dar-2217
ENSDARG00000075046.5
E7EYH1
rnf151
64
LLPS-Dar-2557
ENSDARG00000100188.2
A0A0G2KGY0
rnps1
65
LLPS-Dar-1324
ENSDARG00000059357.6
F1QT63
sarnp
66
LLPS-Dar-0362
ENSDARG00000041887.6
Q90X41
sf3a1
67
LLPS-Dar-0091
ENSDARG00000021107.6
Q7ZVD4
sf3a2
68
LLPS-Dar-1284
ENSDARG00000100114.3
A0A0R4ILH7
sf3a3
69
LLPS-Dar-0383
ENSDARG00000056138.7
F1QQZ1
sf3b1
70
LLPS-Dar-1338
ENSDARG00000011564.11
Q1L8R2
sfpq
71
LLPS-Dar-2312
ENSDARG00000036096.9
Q8AY15
smad3a
72
LLPS-Dar-1060
ENSDARG00000077536.4
B0S754
snrnp200
73
LLPS-Dar-0203
ENSDARG00000099913.2
Q4KMD3
snrnp35
74
LLPS-Dar-0921
ENSDARG00000077126.5
Q6DRE8
snrnp70
75
LLPS-Dar-3475
ENSDARG00000018890.10
Q6P2T1
snrpa
76
LLPS-Dar-0886
ENSDARG00000024651.8
F1R300
snrpa1
77
LLPS-Dar-3982
ENSDARG00000039424.6
R4GDR2
snrpb2
78
LLPS-Dar-4280
ENSDARG00000100519.2
Q7T330
spop
79
LLPS-Dar-0148
ENSDARG00000001244.12
E7F1X7
srrm1
80
LLPS-Dar-1486
ENSDARG00000037965.9
F1QLP6
srrm2
81
LLPS-Dar-2138
ENSDARG00000098574.2
A0A0R4IUB5
srsf11
82
LLPS-Dar-0349
ENSDARG00000057691.7
Q7SXP4
srsf1a
83
LLPS-Dar-2399
ENSDARG00000017843.12
Q6NYA0
srsf1b
84
LLPS-Dar-1435
ENSDARG00000057484.8
Q7ZV13
srsf2a
85
LLPS-Dar-2826
ENSDARG00000059360.7
A5WWG4
srsf3b
86
LLPS-Dar-2655
ENSDARG00000105293.2
Q802Y1
srsf4
87
LLPS-Dar-3459
ENSDARG00000101057.2
Q4V8Q5
srsf7b
88
LLPS-Dar-1615
ENSDARG00000022712.12
O93599
stat3
89
LLPS-Dar-0335
ENSDARG00000044267.6
Q7SZR5
sumo1
90
LLPS-Dar-0206
ENSDARG00000079766.5
A0A2R8Q3W5
tap1
91
LLPS-Dar-2617
ENSDARG00000042259.7
F1QQ20
tgfbr1b
92
LLPS-Dar-1272
ENSDARG00000002168.8
B0V332
tra2b
93
LLPS-Dar-3172
ENSDARG00000013845.6
F1QYV0
ttc14
94
LLPS-Dar-0831
ENSDARG00000011740.11
A0A0R4IMP0
u2af2b
95
LLPS-Dar-0832
ENSDARG00000061490.8
E9QCG7
u2surp
96
LLPS-Dar-0250
ENSDARG00000063229.8
A0A2R8RNP8
xpo1b
97
LLPS-Dar-3171
ENSDARG00000051953.5
B8JMA3
ythdc1
98
LLPS-Dar-1054
ENSDARG00000009754.11
F1QNW1
zc3h11a
99
LLPS-Dar-2457
ENSDARG00000086017.5
E7EYP0
zgc:153681
100
LLPS-Dar-0414
ENSDARG00000019765.11
A3KMT0
zgc:158803
101
LLPS-Dar-0630
ENSDARG00000016651.10
F1QN33
znf106a
102
LLPS-Dar-1268
ENSDARG00000068400.6
A0A2R8QJR9
znf131