Chondrus crispus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 27 genes.  Reviewed (0 or Unreviewed (27

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Chc-0134
CHC_T00000378001
R7QNC0
CHC_T00000378001
2
LLPS-Chc-0057
CHC_T00000577001
R7QK97
CHC_T00000577001
3
LLPS-Chc-0216
CHC_T00000666001
R7QRZ0
CHC_T00000666001
4
LLPS-Chc-0040
CHC_T00001055001
R7QLL7
CHC_T00001055001
5
LLPS-Chc-0362
CHC_T00001532001
R7Q235
CHC_T00001532001
6
LLPS-Chc-0759
CHC_T00001600001
S0F2X8
CHC_T00001600001
7
LLPS-Chc-0453
CHC_T00001866001
R7Q5E3
CHC_T00001866001
8
LLPS-Chc-0778
CHC_T00003228001
R7QBP5
CHC_T00003228001
9
LLPS-Chc-0397
CHC_T00003410001
R7QBA7
CHC_T00003410001
10
LLPS-Chc-0085
CHC_T00004892001
R7QDG4
CHC_T00004892001
11
LLPS-Chc-0742
CHC_T00005573001
R7QFS3
CHC_T00005573001
12
LLPS-Chc-0202
CHC_T00005699001
R7QJH5
CHC_T00005699001
13
LLPS-Chc-0672
CHC_T00006651001
R7QQ21
CHC_T00006651001
14
LLPS-Chc-0243
CHC_T00006901001
R7QR40
CHC_T00006901001
15
LLPS-Chc-1051
CHC_T00007737001
R7QRS4
CHC_T00007737001
16
LLPS-Chc-0584
CHC_T00008502001
R7Q8L1
CHC_T00008502001
17
LLPS-Chc-0093
CHC_T00009403001
R7QB72
CHC_T00009403001
18
LLPS-Chc-0548
CHC_T00009512001
R7QKX5
CHC_T00009512001
19
LLPS-Chc-0802
CHC_T00010021001
R7Q4X6
CHC_T00010021001
20
LLPS-Chc-0870
CHC_T00010088001
R7Q2G9
CHC_T00010088001
21
LLPS-Chc-0010
CHC_T00010092001
R7Q7U4
CHC_T00010092001
22
LLPS-Chc-0336
CHC_T00010137001
R7Q9Y4
CHC_T00010137001
23
LLPS-Chc-0155
CHC_T00010162001
R7QGI3
CHC_T00010162001
24
LLPS-Chc-0489
CHC_T00010256001
R7QE84
CHC_T00010256001
25
LLPS-Chc-0716
CHC_T00010257001
R7QAW1
CHC_T00010257001
26
LLPS-Chc-1194
CHC_T00010295001
R7Q9H2
CHC_T00010295001
27
LLPS-Chc-0034
CHC_T00010332001
R7QSG6
CHC_T00010332001