LLPS-Chc-0336
CHC_T00010137001
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | Similar to Aly, THO complex subunit, putative |
| Gene Name: | CHC_T00010137001 |
| Ensembl Gene: | CHC_T00010137001 |
| Ensembl Protein: | CDF34573 |
| Organism: | Chondrus crispus |
| Taxa ID: | 2769 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nuclear speckle, Nucleolus, Stress granule | Predicted from orthologs | (View) |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | CDF34573 | CDF34573 |
| UniProt | R7Q9Y4, R7Q9Y4_CHOCR | |
| GeneBank | HG001699 | CDF34573.1 |
| RefSeq | XM_005714335.1 | XP_005714392.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MNIDRPLDEI VKESVAARKA ARQAKRKEIA QTKKTKGTDS AAVQKASPVL AQKLGVAKKE 60 61 GSISKKQRRR ERRAAAATAA ASGADEENRR TNGNTNNARP NGNAPRPQSR NDKPFRNDKA 120 121 PRSSQHQGGV ANRLSTKASG QAARRATPKG VKIRVSNLHP GVTETDIGEL FETVGPIKKA 180 181 HLKTFANGHS ACEAEVIFER MADALEAINR YNQVPLDNHP LHITLATDSI ASTAGHEPIH 240 241 NRVGKPRARN HNPRNSEYAD EPDSPNSANV YSEQRSGSPD NDRDRQGGGR GRQNRRRFNK 300 301 RYQNRGPNGN GNGNRNGADR GDHGERDSYD 330 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGAACATTG ACCGTCCGCT TGACGAGATC GTGAAGGAGT CTGTCGCCGC GCGTAAGGCT 60 61 GCCAGACAGG CGAAGCGCAA AGAGATAGCC CAGACCAAGA AAACAAAAGG CACAGACTCT 120 121 GCAGCCGTGC AGAAAGCCAG TCCAGTCCTT GCCCAGAAGC TTGGCGTCGC CAAAAAGGAA 180 181 GGTTCTATTT CTAAAAAGCA GCGCCGTCGC GAGCGTAGGG CCGCCGCTGC TACTGCCGCT 240 241 GCGTCCGGTG CGGATGAGGA GAATCGCCGC ACCAATGGAA ACACCAACAA CGCTCGCCCG 300 301 AATGGTAATG CGCCGCGCCC ACAGTCTAGG AATGACAAAC CCTTTAGGAA CGACAAAGCG 360 361 CCCCGCTCAT CACAGCACCA GGGCGGCGTT GCTAACCGCT TGTCGACGAA GGCGTCAGGC 420 421 CAAGCTGCTC GTCGAGCCAC GCCAAAGGGA GTCAAGATTC GAGTTTCAAA CTTGCATCCT 480 481 GGTGTCACTG AGACAGACAT TGGTGAGCTT TTTGAGACGG TCGGTCCTAT CAAGAAAGCT 540 541 CACCTCAAGA CTTTCGCCAA TGGCCATTCG GCTTGCGAGG CTGAGGTTAT TTTCGAGCGC 600 601 ATGGCAGACG CTCTTGAGGC CATTAACCGC TACAACCAGG TTCCTCTAGA CAACCATCCT 660 661 TTGCACATCA CACTCGCAAC TGATTCCATC GCCTCCACGG CTGGTCATGA ACCCATCCAT 720 721 AACAGGGTAG GCAAACCTCG TGCGAGGAAT CATAACCCTC GGAACAGCGA ATACGCGGAT 780 781 GAGCCGGATT CACCGAACAG TGCAAATGTT TACAGCGAAC AGCGTAGTGG TTCTCCGGAT 840 841 AATGACCGCG ACCGCCAAGG AGGTGGTCGG GGTCGCCAGA ACCGCAGGCG CTTTAATAAG 900 901 AGGTATCAGA ACAGGGGTCC GAATGGCAAT GGGAATGGCA ACCGCAACGG TGCCGACCGT 960 961 GGTGACCATG GCGAGCGCGA TTCGTATGAC TAG 993 |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Ere-1043 | Erinaceus europaeus | 51.52 | 8e-11 | 63.9 |
| LLPS-Ict-4579 | Ictidomys tridecemlineatus | 51.52 | 7e-11 | 64.3 |
| LLPS-Drm-2123 | Drosophila melanogaster | 51.25 | 7e-17 | 82.8 |
| LLPS-Myl-2275 | Myotis lucifugus | 50.0 | 7e-14 | 74.3 |
| LLPS-Urm-1481 | Ursus maritimus | 50.0 | 3e-12 | 69.3 |
| LLPS-Xet-0573 | Xenopus tropicalis | 49.38 | 5e-15 | 77.4 |
| LLPS-Fia-2324 | Ficedula albicollis | 49.38 | 2e-15 | 77.0 |
| LLPS-Ova-1641 | Ovis aries | 49.37 | 3e-14 | 75.1 |
| LLPS-Aim-0901 | Ailuropoda melanoleuca | 49.37 | 9e-15 | 76.3 |
| LLPS-Mal-4670 | Mandrillus leucophaeus | 49.37 | 2e-14 | 75.1 |
| LLPS-Paa-2069 | Papio anubis | 49.37 | 3e-14 | 75.1 |
| LLPS-Bot-1908 | Bos taurus | 49.37 | 2e-14 | 75.5 |
| LLPS-Dio-1078 | Dipodomys ordii | 49.37 | 6e-15 | 77.0 |
| LLPS-Tut-2309 | Tursiops truncatus | 49.37 | 2e-14 | 75.5 |
| LLPS-Icp-2497 | Ictalurus punctatus | 49.37 | 1e-14 | 77.0 |
| LLPS-Caj-3822 | Callithrix jacchus | 49.37 | 2e-14 | 75.5 |
| LLPS-Fud-2661 | Fukomys damarensis | 49.37 | 2e-14 | 75.1 |
| LLPS-Gog-2696 | Gorilla gorilla | 49.37 | 3e-14 | 75.5 |
| LLPS-Aon-4793 | Aotus nancymaae | 49.37 | 3e-14 | 75.1 |
| LLPS-Cea-0931 | Cercocebus atys | 49.37 | 4e-14 | 75.1 |
| LLPS-Sus-0377 | Sus scrofa | 49.37 | 2e-14 | 75.9 |
| LLPS-Leo-1358 | Lepisosteus oculatus | 49.37 | 2e-14 | 75.5 |
| LLPS-Chs-0428 | Chlorocebus sabaeus | 49.37 | 2e-14 | 75.9 |
| LLPS-Mea-3869 | Mesocricetus auratus | 49.37 | 1e-14 | 76.3 |
| LLPS-Mum-2842 | Mus musculus | 49.37 | 2e-14 | 75.9 |
| LLPS-Maf-0946 | Macaca fascicularis | 49.37 | 2e-14 | 75.5 |
| LLPS-Nol-3833 | Nomascus leucogenys | 49.37 | 5e-14 | 75.1 |
| LLPS-Cas-3872 | Carlito syrichta | 49.37 | 2e-14 | 75.9 |
| LLPS-Mam-0204 | Macaca mulatta | 49.37 | 4e-14 | 75.1 |
| LLPS-Eqc-0460 | Equus caballus | 49.37 | 3e-14 | 75.5 |
| LLPS-Cap-0174 | Cavia porcellus | 49.37 | 2e-14 | 75.9 |
| LLPS-Caf-1204 | Canis familiaris | 49.37 | 2e-14 | 75.5 |
| LLPS-Poa-3299 | Pongo abelii | 49.37 | 2e-14 | 75.9 |
| LLPS-Rhb-2185 | Rhinopithecus bieti | 49.37 | 3e-14 | 75.1 |
| LLPS-Otg-2317 | Otolemur garnettii | 49.37 | 6e-15 | 76.6 |
| LLPS-Loa-1260 | Loxodonta africana | 49.37 | 6e-15 | 75.9 |
| LLPS-Man-2323 | Macaca nemestrina | 49.37 | 5e-14 | 75.1 |
| LLPS-Lac-3917 | Latimeria chalumnae | 49.37 | 2e-14 | 75.5 |
| LLPS-Fec-2360 | Felis catus | 49.37 | 2e-14 | 75.9 |
| LLPS-Mod-1320 | Monodelphis domestica | 49.37 | 4e-14 | 75.5 |
| LLPS-Pap-1457 | Pan paniscus | 49.37 | 2e-14 | 75.9 |
| LLPS-Pat-1922 | Pan troglodytes | 49.37 | 5e-14 | 75.1 |
| LLPS-Hos-2292 | Homo sapiens | 49.37 | 2e-14 | 75.9 |
| LLPS-Dar-0677 | Danio rerio | 49.37 | 2e-14 | 76.3 |
| LLPS-Sah-0951 | Sarcophilus harrisii | 48.68 | 1e-13 | 73.2 |
| LLPS-Orl-3399 | Oryzias latipes | 48.48 | 5e-09 | 60.8 |
| LLPS-Tag-3542 | Taeniopygia guttata | 48.39 | 2e-09 | 59.7 |
| LLPS-Pes-1656 | Pelodiscus sinensis | 48.39 | 2e-09 | 59.7 |
| LLPS-Anp-2309 | Anas platyrhynchos | 48.39 | 2e-09 | 59.7 |
| LLPS-Asm-0936 | Astyanax mexicanus | 48.15 | 6e-14 | 75.1 |
| LLPS-Xim-3793 | Xiphophorus maculatus | 48.1 | 4e-14 | 75.1 |
| LLPS-Ten-1026 | Tetraodon nigroviridis | 48.1 | 7e-14 | 73.9 |
| LLPS-Orn-1166 | Oreochromis niloticus | 48.1 | 2e-14 | 75.9 |
| LLPS-Scm-2828 | Scophthalmus maximus | 48.1 | 4e-14 | 75.1 |
| LLPS-Pof-4032 | Poecilia formosa | 48.1 | 4e-14 | 75.1 |
| LLPS-Ran-0467 | Rattus norvegicus | 47.56 | 6e-11 | 64.7 |
| LLPS-Orgl-1845 | Oryza glumaepatula | 47.37 | 8e-13 | 73.2 |
| LLPS-Gaga-1318 | Gallus gallus | 46.74 | 1e-15 | 79.0 |
| LLPS-Viv-1063 | Vitis vinifera | 46.05 | 2e-11 | 65.9 |
| LLPS-Sol-1012 | Solanum lycopersicum | 45.92 | 1e-13 | 73.2 |
| LLPS-Gaa-3059 | Gasterosteus aculeatus | 45.57 | 1e-12 | 70.9 |
| LLPS-Gas-0116 | Galdieria sulphuraria | 45.45 | 3e-15 | 77.0 |
| LLPS-Hea-1099 | Helianthus annuus | 45.45 | 1e-11 | 68.2 |
| LLPS-Sot-1762 | Solanum tuberosum | 45.36 | 2e-13 | 72.8 |
| LLPS-Sob-0241 | Sorghum bicolor | 44.59 | 3e-10 | 64.3 |
| LLPS-Vir-1839 | Vigna radiata | 44.16 | 1e-11 | 68.9 |
| LLPS-Via-2094 | Vigna angularis | 44.16 | 3e-12 | 70.1 |
| LLPS-Cis-0466 | Ciona savignyi | 44.16 | 1e-10 | 66.2 |
| LLPS-Gor-0749 | Gossypium raimondii | 44.16 | 3e-12 | 69.7 |
| LLPS-Tar-1156 | Takifugu rubripes | 44.09 | 1e-14 | 76.6 |
| LLPS-Mua-1039 | Musa acuminata | 43.53 | 7e-14 | 73.9 |
| LLPS-Orni-1935 | Oryza nivara | 43.42 | 2e-11 | 66.2 |
| LLPS-Php-2383 | Physcomitrella patens | 43.42 | 2e-11 | 67.4 |
| LLPS-Ori-2349 | Oryza indica | 43.42 | 3e-11 | 66.2 |
| LLPS-Orr-2292 | Oryza rufipogon | 43.42 | 1e-11 | 66.6 |
| LLPS-Orp-0681 | Oryza punctata | 43.42 | 4e-11 | 65.9 |
| LLPS-Ors-1988 | Oryza sativa | 43.42 | 2e-11 | 66.6 |
| LLPS-Meg-2106 | Meleagris gallopavo | 43.42 | 3e-08 | 58.9 |
| LLPS-Hov-0533 | Hordeum vulgare | 43.21 | 3e-11 | 67.4 |
| LLPS-Orbr-2348 | Oryza brachyantha | 43.21 | 2e-12 | 70.1 |
| LLPS-Pot-2350 | Populus trichocarpa | 42.86 | 1e-11 | 68.2 |
| LLPS-Mel-0304 | Melampsora laricipopulina | 42.68 | 3e-08 | 57.4 |
| LLPS-Prp-1116 | Prunus persica | 42.5 | 3e-09 | 60.8 |
| LLPS-Met-0383 | Medicago truncatula | 42.39 | 4e-13 | 72.0 |
| LLPS-Tru-0342 | Triticum urartu | 42.39 | 2e-11 | 67.0 |
| LLPS-Coc-1679 | Corchorus capsularis | 42.35 | 4e-11 | 66.6 |
| LLPS-Cii-1625 | Ciona intestinalis | 42.11 | 5e-10 | 64.3 |
| LLPS-Sei-1737 | Setaria italica | 41.77 | 2e-10 | 65.5 |
| LLPS-Glm-0274 | Glycine max | 41.49 | 2e-12 | 70.9 |
| LLPS-Dac-1665 | Daucus carota | 41.33 | 6e-11 | 67.0 |
| LLPS-Orb-1403 | Oryza barthii | 41.25 | 8e-11 | 65.9 |
| LLPS-Brd-1874 | Brachypodium distachyon | 41.18 | 4e-11 | 66.6 |
| LLPS-Sem-0419 | Selaginella moellendorffii | 40.96 | 1e-11 | 67.4 |
| LLPS-Nia-1606 | Nicotiana attenuata | 40.79 | 3e-09 | 60.5 |
| LLPS-Tra-3085 | Triticum aestivum | 40.54 | 2e-08 | 58.9 |
| LLPS-Lep-1968 | Leersia perrieri | 40.51 | 2e-09 | 61.2 |
| LLPS-Cus-1057 | Cucumis sativus | 40.43 | 8e-12 | 68.6 |
| LLPS-Thc-1831 | Theobroma cacao | 40.43 | 1e-11 | 68.2 |
| LLPS-Phv-1271 | Phaseolus vulgaris | 40.4 | 2e-13 | 72.8 |
| LLPS-Art-1266 | Arabidopsis thaliana | 40.0 | 8e-11 | 65.9 |
| LLPS-Arl-2449 | Arabidopsis lyrata | 39.76 | 1e-10 | 65.5 |
| LLPS-Scf-1006 | Scleropages formosus | 39.32 | 7e-15 | 76.3 |
| LLPS-Tum-1520 | Tuber melanosporum | 39.18 | 2e-08 | 58.5 |
| LLPS-Brn-2679 | Brassica napus | 38.89 | 4e-12 | 69.3 |
| LLPS-Bro-2375 | Brassica oleracea | 38.89 | 1e-11 | 67.8 |
| LLPS-Brr-0177 | Brassica rapa | 38.89 | 1e-11 | 68.2 |
| LLPS-Mae-1355 | Manihot esculenta | 38.52 | 4e-16 | 80.1 |
| LLPS-Zem-2622 | Zea mays | 37.8 | 8e-10 | 62.8 |
| LLPS-Amt-1520 | Amborella trichopoda | 37.61 | 4e-13 | 72.0 |
| LLPS-Org-0281 | Oryza glaberrima | 37.5 | 2e-09 | 61.6 |
| LLPS-Orc-0198 | Oryctolagus cuniculus | 37.5 | 2e-08 | 59.7 |
| LLPS-Orm-1987 | Oryza meridionalis | 36.28 | 4e-10 | 63.5 |
| LLPS-Anc-4040 | Anolis carolinensis | 34.68 | 2e-08 | 59.3 |
| LLPS-Trv-1598 | Trichoderma virens | 34.48 | 4e-09 | 61.2 |
| LLPS-Trr-0502 | Trichoderma reesei | 33.71 | 9e-10 | 63.2 |
| LLPS-Fus-0374 | Fusarium solani | 32.74 | 8e-11 | 66.2 |
| LLPS-Aso-1478 | Aspergillus oryzae | 32.2 | 2e-10 | 64.3 |
| LLPS-Asf-0964 | Aspergillus flavus | 31.58 | 1e-09 | 62.8 |
| LLPS-Abg-0229 | Absidia glauca | 29.27 | 1e-09 | 62.0 |