Canis familiaris      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 114 genes.  Reviewed (0 or Unreviewed (114

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Caf-2059
ENSCAFG00000003207.3
F1Q0F6
2
LLPS-Caf-2858
ENSCAFG00000017339.3
J9P797
3
LLPS-Caf-3086
ENSCAFG00000003095.3
F1Q237
4
LLPS-Caf-3476
ENSCAFG00000030475.1
J9NW96
5
LLPS-Caf-0285
ENSCAFG00000001196.3
F1PQZ7
AGO2
6
LLPS-Caf-3097
ENSCAFG00000028835.1
J9JHP7
AKAP17A
7
LLPS-Caf-1204
ENSCAFG00000005877.3
F1PL92
ALYREF
8
LLPS-Caf-2515
ENSCAFG00000008973.3
F1PTL7
ANXA10
9
LLPS-Caf-0839
ENSCAFG00000016686.3
Q6TEQ7
ANXA2
10
LLPS-Caf-2197
ENSCAFG00000007665.4
J9P4L0
ARL6IP4
11
LLPS-Caf-1280
ENSCAFG00000007863.4
E2QXA4
ATR
12
LLPS-Caf-0084
ENSCAFG00000009470.3
E2RL57
BCAS2
13
LLPS-Caf-0334
ENSCAFG00000017621.3
F1PKV2
CARM1
14
LLPS-Caf-0549
ENSCAFG00000016141.4
E2R5K5
CASC3
15
LLPS-Caf-3238
ENSCAFG00000008884.3
F1Q423
CCNL1
16
LLPS-Caf-2391
ENSCAFG00000001996.3
E2RLP4
CDC5L
17
LLPS-Caf-2162
ENSCAFG00000012904.4
E2RGJ9
CDK1
18
LLPS-Caf-0877
ENSCAFG00000007748.4
E2R8R2
CDK7
19
LLPS-Caf-3263
ENSCAFG00000030200.1
J9NWT0
CDK9
20
LLPS-Caf-4619
ENSCAFG00000012819.3
F1PJ61
CDKL5
21
LLPS-Caf-1135
ENSCAFG00000016969.3
F1P919
CLK2
22
LLPS-Caf-3442
ENSCAFG00000014263.3
E2RRJ5
COP1
23
LLPS-Caf-1292
ENSCAFG00000018286.4
F1PUU0
CSNK1A1
24
LLPS-Caf-3569
ENSCAFG00000008790.3
E2RSA6
CTNNBL1
25
LLPS-Caf-2108
ENSCAFG00000000509.4
Q5WR10
DDX39B
26
LLPS-Caf-2351
ENSCAFG00000001048.3
F1PK90
DDX46
27
LLPS-Caf-3389
ENSCAFG00000014196.3
E2RDL9
DGCR8
28
LLPS-Caf-1205
ENSCAFG00000016286.3
E2R9D7
DNAJB1
29
LLPS-Caf-0263
ENSCAFG00000009322.3
E2RGH7
DNAJC17
30
LLPS-Caf-1974
ENSCAFG00000011429.3
E2R8C3
DYRK3
31
LLPS-Caf-4508
ENSCAFG00000011532.4
F1PWS8
EGF
32
LLPS-Caf-1528
ENSCAFG00000032389.1
J9P0J7
ERH
33
LLPS-Caf-2571
ENSCAFG00000014827.4
F1PG04
EZH1
34
LLPS-Caf-1576
ENSCAFG00000004118.4
E2RQE5
FAM76B
35
LLPS-Caf-3711
ENSCAFG00000032391.1
J9P7P6
FAM83H
36
LLPS-Caf-1307
ENSCAFG00000005182.4
E2RNI6
FANCD2
37
LLPS-Caf-3539
ENSCAFG00000011620.3
F1PF23
FANCI
38
LLPS-Caf-0927
ENSCAFG00000016024.3
F1PX13
FBXL18
39
LLPS-Caf-0553
ENSCAFG00000005970.3
E2R186
FGFR1
40
LLPS-Caf-0833
ENSCAFG00000013615.3
E2R8F5
FRMD8
41
LLPS-Caf-0611
ENSCAFG00000016862.4
F1PBJ4
FUS
42
LLPS-Caf-0674
ENSCAFG00000016270.3
J9P2B1
FYTTD1
43
LLPS-Caf-4687
ENSCAFG00000003535.4
J9P1Q3
GLI3
44
LLPS-Caf-0044
ENSCAFG00000011122.4
E2RB53
GSK3B
45
LLPS-Caf-3469
ENSCAFG00000015718.3
F1PZ54
HIF1A
46
LLPS-Caf-3066
ENSCAFG00000004038.3
F1PR67
HIPK2
47
LLPS-Caf-2898
ENSCAFG00000006580.4
F1Q3G7
HNRNPA1
48
LLPS-Caf-3114
ENSCAFG00000002885.4
F1Q1K6
HNRNPA2B1
49
LLPS-Caf-0132
ENSCAFG00000001399.4
E2RA50
HNRNPK
50
LLPS-Caf-2814
ENSCAFG00000006538.4
F1Q3Z6
HSPH1
51
LLPS-Caf-2881
ENSCAFG00000017530.3
E2R9T6
ILF2
52
LLPS-Caf-0093
ENSCAFG00000017691.3
F1PGB6
ILF3
53
LLPS-Caf-3824
ENSCAFG00000013589.3
E2R9B4
IVNS1ABP
54
LLPS-Caf-1448
ENSCAFG00000011598.3
E2R6L9
KPNA2
55
LLPS-Caf-1441
ENSCAFG00000005520.3
E2R2A8
LOC100686524
56
LLPS-Caf-3098
ENSCAFG00000019689.3
E2R0S7
LUC7L
57
LLPS-Caf-1896
ENSCAFG00000003614.3
E2R5E4
NOSIP
58
LLPS-Caf-2780
ENSCAFG00000023086.2
F1PHU7
NR5A1
59
LLPS-Caf-2257
ENSCAFG00000018976.4
E2QUP1
NSRP1
60
LLPS-Caf-2466
ENSCAFG00000010038.3
F1PEE7
NUAK2
61
LLPS-Caf-2644
ENSCAFG00000015594.4
F6XRT0
NXF1
62
LLPS-Caf-1228
ENSCAFG00000005344.3
F1PYD9
OGG1
63
LLPS-Caf-4640
ENSCAFG00000008534.3
F1P654
P2RY12
64
LLPS-Caf-2960
ENSCAFG00000011482.4
E2R6I0
PABPN1
65
LLPS-Caf-1346
ENSCAFG00000003326.2
J9P7Y9
PCBP1
66
LLPS-Caf-1340
ENSCAFG00000008399.4
E2QYT6
PLRG1
67
LLPS-Caf-3922
ENSCAFG00000013878.3
F1PMU1
PNN
68
LLPS-Caf-1796
ENSCAFG00000012372.4
J9PAE8
PPIG
69
LLPS-Caf-0333
ENSCAFG00000016438.3
E2R8L3
PRPF19
70
LLPS-Caf-0659
ENSCAFG00000019221.3
E2R4X9
PRPF8
71
LLPS-Caf-1219
ENSCAFG00000015287.4
E2RKR4
PSMA3
72
LLPS-Caf-0944
ENSCAFG00000019693.4
F1PCJ7
PTBP1
73
LLPS-Caf-4413
ENSCAFG00000019902.4
J9P726
RAPGEF1
74
LLPS-Caf-1765
ENSCAFG00000005206.4
E2RMQ0
RBM17
75
LLPS-Caf-2386
ENSCAFG00000011217.5
J9P448
RBM23
76
LLPS-Caf-3053
ENSCAFG00000018770.4
J9P250
RBMX2
77
LLPS-Caf-2040
ENSCAFG00000019463.3
F1Q031
RNF151
78
LLPS-Caf-3405
ENSCAFG00000019397.3
F6XEW2
RNPS1
79
LLPS-Caf-1421
ENSCAFG00000023714.2
F1PVE3
SARNP
80
LLPS-Caf-3196
ENSCAFG00000014239.3
E2RRT4
SF1
81
LLPS-Caf-2069
ENSCAFG00000012559.4
E2RDL8
SF3A1
82
LLPS-Caf-2483
ENSCAFG00000019414.4
J9P6E2
SF3A2
83
LLPS-Caf-3520
ENSCAFG00000000683.2
E2QXU5
SF3A3
84
LLPS-Caf-3312
ENSCAFG00000010826.3
F1PKF6
SF3B1
85
LLPS-Caf-1252
ENSCAFG00000003595.3
F1P7J0
SFPQ
86
LLPS-Caf-1951
ENSCAFG00000017388.3
F1PSQ3
SMAD3
87
LLPS-Caf-0791
ENSCAFG00000007484.3
F1P6U2
SNRNP35
88
LLPS-Caf-0159
ENSCAFG00000003711.4
F6V5G7
SNRNP70
89
LLPS-Caf-0179
ENSCAFG00000005091.3
F1PFC6
SNRPA
90
LLPS-Caf-1285
ENSCAFG00000010564.2
E2QWU2
SNRPA1
91
LLPS-Caf-3400
ENSCAFG00000009106.5
E2RRP5
SON
92
LLPS-Caf-4480
ENSCAFG00000016942.3
E2RS90
SPOP
93
LLPS-Caf-1702
ENSCAFG00000019346.4
F1Q2Z4
SRRM2
94
LLPS-Caf-0040
ENSCAFG00000017430.3
E2RJL3
SRSF1
95
LLPS-Caf-1212
ENSCAFG00000020423.3
F1P6U8
SRSF11
96
LLPS-Caf-0987
ENSCAFG00000005147.3
E2RDB2
SRSF2
97
LLPS-Caf-0996
ENSCAFG00000001414.3
F2Z4N6
SRSF3
98
LLPS-Caf-2609
ENSCAFG00000011669.3
F1PEZ0
SRSF4
99
LLPS-Caf-2801
ENSCAFG00000029620.1
J9P2I8
SRSF7
100
LLPS-Caf-0121
ENSCAFG00000010314.4
E2RK20
SRSF9
101
LLPS-Caf-0169
ENSCAFG00000015213.3
E2RB82
STAT3
102
LLPS-Caf-1608
ENSCAFG00000012431.3
E2RR10
SUMO1
103
LLPS-Caf-1924
ENSCAFG00000000832.3
F1PTN5
TAP1
104
LLPS-Caf-2436
ENSCAFG00000002528.4
F1PS63
TGFBR1
105
LLPS-Caf-0938
ENSCAFG00000013345.3
E2RD37
TRA2B
106
LLPS-Caf-2927
ENSCAFG00000011520.4
E2R1N4
TTC14
107
LLPS-Caf-2277
ENSCAFG00000002551.3
E2R0G3
U2AF2
108
LLPS-Caf-1534
ENSCAFG00000007973.3
E2R1V3
U2SURP
109
LLPS-Caf-0030
ENSCAFG00000003050.3
E2R9K4
XPO1
110
LLPS-Caf-1245
ENSCAFG00000002821.4
E2R3C8
YTHDC1
111
LLPS-Caf-0522
ENSCAFG00000009602.4
E2RJJ0
ZC3H11A
112
LLPS-Caf-3751
ENSCAFG00000010824.5
E2RB88
ZNF106
113
LLPS-Caf-0149
ENSCAFG00000018578.4
E2RHQ8
ZNF131
114
LLPS-Caf-0626
ENSCAFG00000029440.1
J9P1Y4
ZNF688