Theobroma cacao      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 39 genes.  Reviewed (0 or Unreviewed (39

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Thc-0569
TCM_004631
A0A061DSH4
LSM4
2
LLPS-Thc-0630
TCM_000127
A0A061DGE8
TCM_000127
3
LLPS-Thc-0634
TCM_000516
A0A061DG54
TCM_000516
4
LLPS-Thc-2063
TCM_000667
A0A061DNE6
TCM_000667
5
LLPS-Thc-0123
TCM_002572
A0A061DLY9
TCM_002572
6
LLPS-Thc-0244
TCM_005373
A0A061DTF1
TCM_005373
7
LLPS-Thc-0444
TCM_005631
A0A061E270
TCM_005631
8
LLPS-Thc-0802
TCM_005786
A0A061DVW8
TCM_005786
9
LLPS-Thc-0583
TCM_005999
A0A061DVW0
TCM_005999
10
LLPS-Thc-0242
TCM_006568
A0A061DXT0
TCM_006568
11
LLPS-Thc-0775
TCM_006886
A0A061DZ10
TCM_006886
12
LLPS-Thc-0692
TCM_007642
A0A061E9N1
TCM_007642
13
LLPS-Thc-2053
TCM_010779
A0A061E764
TCM_010779
14
LLPS-Thc-1209
TCM_011019
A0A061E9M4
TCM_011019
15
LLPS-Thc-2228
TCM_012227
A0A061FUX7
TCM_012227
16
LLPS-Thc-0037
TCM_012560
A0A061FWG3
TCM_012560
17
LLPS-Thc-0159
TCM_012601
A0A061FVH4
TCM_012601
18
LLPS-Thc-0601
TCM_015226
A0A061G0C4
TCM_015226
19
LLPS-Thc-0004
TCM_015443
A0A061G179
TCM_015443
20
LLPS-Thc-0218
TCM_015576
A0A061G9T0
TCM_015576
21
LLPS-Thc-0265
TCM_018485
A0A061EGA7
TCM_018485
22
LLPS-Thc-1442
TCM_020236
A0A061ELE4
TCM_020236
23
LLPS-Thc-1868
TCM_024585
A0A061EX33
TCM_024585
24
LLPS-Thc-0311
TCM_025439
A0A061EZF8
TCM_025439
25
LLPS-Thc-1004
TCM_026465
A0A061F3J0
TCM_026465
26
LLPS-Thc-0103
TCM_026998
A0A061G907
TCM_026998
27
LLPS-Thc-0930
TCM_027095
A0A061GFC4
TCM_027095
28
LLPS-Thc-2111
TCM_027396
A0A061GA19
TCM_027396
29
LLPS-Thc-1008
TCM_029104
A0A061GDJ6
TCM_029104
30
LLPS-Thc-1165
TCM_029178
A0A061GD25
TCM_029178
31
LLPS-Thc-0816
TCM_029312
A0A061GC57
TCM_029312
32
LLPS-Thc-0052
TCM_036589
A0A061FSB3
TCM_036589
33
LLPS-Thc-1505
TCM_037236
A0A061GJV8
TCM_037236
34
LLPS-Thc-2269
TCM_037492
A0A061GK43
TCM_037492
35
LLPS-Thc-1788
TCM_039193
A0A061GXL5
TCM_039193
36
LLPS-Thc-1055
TCM_040022
A0A061GYQ5
TCM_040022
37
LLPS-Thc-2334
TCM_041358
A0A061GW20
TCM_041358
38
LLPS-Thc-0187
TCM_041912
A0A061GWH2
TCM_041912
39
LLPS-Thc-0173
TCM_043141
A0A061FPQ5
TCM_043141