Arabidopsis thaliana      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 39 genes.  Reviewed (21 or Unreviewed (18

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Art-0141
AT1G08370
Q9SJF3
At1g08370
2
LLPS-Art-0214
AT3G03920
Q8VZT0
At3g03920
3
LLPS-Art-1212
AT2G25880
Q683C9
AUR2
4
LLPS-Art-0770
AT5G13570
Q8GW31
DCP2
5
LLPS-Art-0643
AT3G60240
Q76E23
EIF4G
6
LLPS-Art-0699
AT5G19820
Q93VS8
emb2734
7
LLPS-Art-0668
AT5G53480
Q9FJD4
KPNB1
8
LLPS-Art-1772
AT5G52470
Q9FEF8
MED36B
9
LLPS-Art-0324
AT4G35800
P18616
NRPB1
10
LLPS-Art-0423
AT1G52980
Q9C923
NUG2
11
LLPS-Art-0858
AT2G45000
Q8L7F7
NUP62
12
LLPS-Art-2295
AT1G59660
F4ID16
NUP98B
13
LLPS-Art-1123
AT1G49760
Q9FXA2
PAB8
14
LLPS-Art-0746
AT1G67090
P10795
RBCS-1A
15
LLPS-Art-1316
AT2G42520
Q84W89
RH37
16
LLPS-Art-1431
AT4G00660
Q8RXK6
RH8
17
LLPS-Art-0601
AT5G39740
P49227
RPL5B
18
LLPS-Art-0355
AT5G58470
Q94KD0
TAF15B
19
LLPS-Art-0416
AT2G16950
Q8H0U4
TRN1
20
LLPS-Art-0627
AT1G17370
Q9LQI9
UBP1B
21
LLPS-Art-0450
AT3G18990
Q8L3W1
VRN1
22
LLPS-Art-2486
AT5G63400
O82514
ADK1
23
LLPS-Art-2996
AT1G18070
Q9LMS7
At1g18070
24
LLPS-Art-2263
AT3G07810
F4JFN7
At3g07810
25
LLPS-Art-2624
AT3G21215
Q9ASW4
At3g21215
26
LLPS-Art-2019
AT5G66010
F4JZ11
At5g66010
27
LLPS-Art-2083
AT1G18040
Q9LMT0
CDKD-3
28
LLPS-Art-2978
AT3G14010
Q94AM9
CID4
29
LLPS-Art-2061
AT1G71800
Q9M9G6
CSTF64
30
LLPS-Art-2601
AT3G29160
P92958
KIN11
31
LLPS-Art-2101
AT5G27720
F4K4E3
LSM4
32
LLPS-Art-2542
AT5G63680
Q9FFP6
MBK5.16
33
LLPS-Art-2189
AT1G80680
Q8LLD0
NUP96
34
LLPS-Art-2603
AT2G19670
O82210
PRMT12
35
LLPS-Art-2540
AT2G01650
Q9ZU93
PUX2
36
LLPS-Art-2574
AT5G61030
Q9FNR1
RBG3
37
LLPS-Art-2615
AT3G55280
Q9M3C3
RPL23AB
38
LLPS-Art-2842
AT1G30970
Q9C5G0
SUF4
39
LLPS-Art-2014
AT3G03110
F4IZR5
XPO1B