LLPS-Thc-2060
TCM_028940
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | RNA polymerase transcriptional regulation mediator-related isoform 1 |
| Gene Name: | TCM_028940 |
| Ensembl Gene: | TCM_028940 |
| Ensembl Protein: | EOY26988 |
| Organism: | Theobroma cacao |
| Taxa ID: | 3641 |
| LLPS Type: | LLPS regulator |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Stress granule, Others | Predicted from orthologs | (View) |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | EOY26988 | EOY26988 |
| Ensembl | EOY26989 | EOY26989 |
| UniProt | A0A061GC41, A0A061GC41_THECC | |
| GeneBank | CM001884 | EOY26988.1 |
| RefSeq | XM_007024304.2 | XP_007024366.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MATPPVAPPQ AAAAGNFEAP PPLPMQPPGT DMTGICFRDQ LWLNTYPLDR NLIFDYFALS 60 61 PFYDWTCNNE QLRMHSIHPL DISQLSKMTG VEYMLSEVME PNLFVIRKQK RDGPEKVTPM 120 121 LAYYILDGSI YQAPQLCNVF AARVGRALYY ISKAFTTAAS KLEKIGYVDT ENESETFESK 180 181 GGKETIDFKE VKRVDHILAS LQRKLPPAPP PPPFPEGFIP LATAEAEKDP ENQQAVETQP 240 241 PAIDPIIDQG PAKRMKF 257 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGCCACGC CACCGGTTGC GCCACCGCAG GCGGCGGCAG CAGGGAATTT CGAAGCGCCA 60 61 CCACCTCTGC CGATGCAGCC TCCTGGAACA GACATGACAG GTATATGTTT CAGAGACCAA 120 121 TTGTGGCTAA ACACGTATCC TCTTGATCGA AACTTGATTT TCGATTACTT TGCTCTGTCT 180 181 CCGTTCTATG ACTGGACTTG CAACAACGAG CAGCTGAGGA TGCACTCCAT TCACCCTCTG 240 241 GACATCTCTC AACTTTCGAA AATGACCGGC GTGGAGTACA TGCTTAGTGA AGTTATGGAG 300 301 CCAAACCTCT TTGTTATCCG TAAGCAAAAG AGGGACGGTC CAGAGAAAGT CACGCCAATG 360 361 CTGGCATATT ATATTTTGGA TGGTTCCATT TACCAAGCAC CACAGCTTTG CAATGTCTTT 420 421 GCAGCTCGAG TTGGACGTGC TCTCTACTAT ATATCAAAAG CTTTTACTAC TGCTGCATCA 480 481 AAATTGGAGA AGATCGGTTA TGTTGATACT GAAAATGAGA GTGAAACTTT TGAATCAAAG 540 541 GGTGGTAAAG AGACTATTGA CTTTAAGGAA GTTAAGCGCG TGGATCATAT TCTCGCCTCC 600 601 TTACAGCGAA AGTTACCACC AGCTCCTCCA CCACCCCCAT TTCCTGAAGG CTTTATTCCC 660 661 CTTGCAACAG CAGAAGCAGA GAAAGACCCA GAAAATCAGC AAGCCGTAGA AACTCAACCT 720 721 CCTGCCATTG ATCCCATTAT TGATCAAGGT CCCGCTAAGA GAATGAAATT TTGA 774 |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Gor-0164 | Gossypium raimondii | 90.99 | 1e-144 | 412 |
| LLPS-Amt-1183 | Amborella trichopoda | 90.07 | 2e-93 | 279 |
| LLPS-Nia-2427 | Nicotiana attenuata | 89.66 | 3e-73 | 228 |
| LLPS-Cus-2102 | Cucumis sativus | 87.5 | 4e-139 | 399 |
| LLPS-Mae-0227 | Manihot esculenta | 86.64 | 1e-135 | 389 |
| LLPS-Phv-1558 | Phaseolus vulgaris | 85.65 | 6e-139 | 398 |
| LLPS-Viv-0956 | Vitis vinifera | 85.28 | 1e-137 | 395 |
| LLPS-Vir-0374 | Vigna radiata | 83.98 | 1e-127 | 369 |
| LLPS-Glm-1609 | Glycine max | 83.98 | 9e-135 | 387 |
| LLPS-Prp-1606 | Prunus persica | 83.4 | 2e-137 | 394 |
| LLPS-Pot-2563 | Populus trichocarpa | 83.26 | 4e-131 | 379 |
| LLPS-Mua-1959 | Musa acuminata | 82.68 | 6e-131 | 378 |
| LLPS-Sot-1214 | Solanum tuberosum | 81.66 | 2e-128 | 371 |
| LLPS-Sol-1045 | Solanum lycopersicum | 81.62 | 6e-128 | 370 |
| LLPS-Met-1774 | Medicago truncatula | 81.47 | 1e-132 | 382 |
| LLPS-Dac-0509 | Daucus carota | 80.52 | 4e-128 | 371 |
| LLPS-Orgl-1587 | Oryza glumaepatula | 76.54 | 9e-39 | 137 |
| LLPS-Hea-2213 | Helianthus annuus | 76.42 | 1e-114 | 336 |
| LLPS-Lep-0008 | Leersia perrieri | 75.58 | 2e-95 | 289 |
| LLPS-Orp-1254 | Oryza punctata | 75.58 | 1e-94 | 286 |
| LLPS-Arl-0644 | Arabidopsis lyrata | 74.36 | 1e-114 | 337 |
| LLPS-Brd-0729 | Brachypodium distachyon | 73.5 | 1e-114 | 337 |
| LLPS-Orb-0243 | Oryza barthii | 73.16 | 2e-115 | 339 |
| LLPS-Ori-1320 | Oryza indica | 73.16 | 4e-115 | 338 |
| LLPS-Orr-1013 | Oryza rufipogon | 73.16 | 4e-115 | 338 |
| LLPS-Org-0288 | Oryza glaberrima | 73.16 | 9e-116 | 340 |
| LLPS-Hov-0948 | Hordeum vulgare | 73.13 | 6e-110 | 324 |
| LLPS-Tra-0727 | Triticum aestivum | 73.13 | 8e-110 | 324 |
| LLPS-Orbr-0569 | Oryza brachyantha | 73.01 | 7e-111 | 326 |
| LLPS-Ors-1154 | Oryza sativa | 72.93 | 7e-114 | 334 |
| LLPS-Sei-0610 | Setaria italica | 71.43 | 2e-110 | 326 |
| LLPS-Sob-1089 | Sorghum bicolor | 71.43 | 3e-110 | 325 |
| LLPS-Brr-1149 | Brassica rapa | 71.37 | 1e-110 | 327 |
| LLPS-Brn-3407 | Brassica napus | 70.94 | 6e-110 | 325 |
| LLPS-Bro-0753 | Brassica oleracea | 70.94 | 9e-111 | 327 |
| LLPS-Orm-0708 | Oryza meridionalis | 67.61 | 5e-72 | 225 |
| LLPS-Sem-2277 | Selaginella moellendorffii | 64.25 | 8e-76 | 236 |
| LLPS-Php-0742 | Physcomitrella patens | 63.44 | 3e-79 | 246 |
| LLPS-Art-2106 | Arabidopsis thaliana | 63.27 | 3e-107 | 319 |
| LLPS-Zem-0975 | Zea mays | 57.89 | 1e-100 | 303 |
| LLPS-Tru-0728 | Triticum urartu | 49.08 | 3e-42 | 149 |
| LLPS-Cii-0639 | Ciona intestinalis | 43.75 | 6e-22 | 93.2 |
| LLPS-Anc-3344 | Anolis carolinensis | 43.18 | 2e-26 | 108 |
| LLPS-Gaga-2712 | Gallus gallus | 42.42 | 4e-26 | 107 |
| LLPS-Xet-3626 | Xenopus tropicalis | 42.42 | 3e-26 | 108 |
| LLPS-Tag-0020 | Taeniopygia guttata | 42.42 | 6e-26 | 107 |
| LLPS-Meg-0552 | Meleagris gallopavo | 42.42 | 5e-26 | 107 |
| LLPS-Fia-1082 | Ficedula albicollis | 42.42 | 1e-25 | 106 |
| LLPS-Tar-2869 | Takifugu rubripes | 42.03 | 9e-24 | 101 |
| LLPS-Xim-2229 | Xiphophorus maculatus | 41.91 | 7e-26 | 107 |
| LLPS-Leo-1270 | Lepisosteus oculatus | 41.67 | 4e-25 | 105 |
| LLPS-Pof-0257 | Poecilia formosa | 41.67 | 1e-24 | 104 |
| LLPS-Asm-1761 | Astyanax mexicanus | 40.91 | 4e-25 | 105 |
| LLPS-Icp-2514 | Ictalurus punctatus | 40.91 | 9e-25 | 102 |
| LLPS-Scm-0368 | Scophthalmus maximus | 40.91 | 1e-23 | 100 |
| LLPS-Orn-0247 | Oreochromis niloticus | 40.91 | 2e-24 | 103 |
| LLPS-Gaa-3509 | Gasterosteus aculeatus | 40.15 | 5e-24 | 101 |
| LLPS-Orl-0285 | Oryzias latipes | 38.64 | 2e-23 | 100 |
| LLPS-Lac-3193 | Latimeria chalumnae | 38.41 | 2e-24 | 103 |
| LLPS-Put-0147 | Puccinia triticina | 37.78 | 2e-16 | 80.1 |
| LLPS-Mel-1214 | Melampsora laricipopulina | 37.4 | 2e-14 | 75.5 |
| LLPS-Spr-0616 | Sporisorium reilianum | 37.4 | 9e-21 | 92.8 |
| LLPS-Eqc-3410 | Equus caballus | 37.3 | 9e-26 | 107 |
| LLPS-Loa-0927 | Loxodonta africana | 37.3 | 2e-26 | 107 |
| LLPS-Scf-0791 | Scleropages formosus | 37.02 | 5e-24 | 102 |
| LLPS-Mam-0005 | Macaca mulatta | 36.76 | 7e-26 | 107 |
| LLPS-Pes-1553 | Pelodiscus sinensis | 36.49 | 1e-26 | 109 |
| LLPS-Cis-0534 | Ciona savignyi | 36.36 | 1e-26 | 108 |
| LLPS-Fud-2914 | Fukomys damarensis | 36.19 | 7e-29 | 115 |
| LLPS-Drm-0575 | Drosophila melanogaster | 36.09 | 5e-25 | 104 |
| LLPS-Pug-0052 | Puccinia graminis | 35.86 | 2e-16 | 80.5 |
| LLPS-Ova-1252 | Ovis aries | 35.85 | 2e-17 | 82.4 |
| LLPS-Sac-1125 | Saccharomyces cerevisiae | 35.8 | 1e-08 | 58.5 |
| LLPS-Sus-2045 | Sus scrofa | 35.71 | 3e-27 | 110 |
| LLPS-Usm-0075 | Ustilago maydis | 35.48 | 4e-20 | 90.9 |
| LLPS-Bot-1098 | Bos taurus | 35.38 | 1e-27 | 111 |
| LLPS-Abg-1798 | Absidia glauca | 35.37 | 1e-21 | 95.9 |
| LLPS-Tut-0911 | Tursiops truncatus | 35.24 | 9e-27 | 109 |
| LLPS-Mal-4397 | Mandrillus leucophaeus | 35.24 | 3e-27 | 111 |
| LLPS-Maf-1984 | Macaca fascicularis | 35.24 | 3e-27 | 111 |
| LLPS-Cea-3825 | Cercocebus atys | 35.24 | 3e-27 | 111 |
| LLPS-Aon-2378 | Aotus nancymaae | 35.24 | 9e-28 | 112 |
| LLPS-Gog-0378 | Gorilla gorilla | 35.24 | 2e-27 | 111 |
| LLPS-Poa-0249 | Pongo abelii | 35.24 | 2e-27 | 111 |
| LLPS-Cap-3744 | Cavia porcellus | 35.24 | 1e-27 | 112 |
| LLPS-Nol-1884 | Nomascus leucogenys | 35.24 | 3e-27 | 110 |
| LLPS-Hos-0079 | Homo sapiens | 35.24 | 2e-27 | 111 |
| LLPS-Pat-2328 | Pan troglodytes | 35.24 | 1e-27 | 112 |
| LLPS-Pap-0983 | Pan paniscus | 35.24 | 1e-27 | 112 |
| LLPS-Man-2010 | Macaca nemestrina | 35.24 | 3e-27 | 111 |
| LLPS-Rhb-0659 | Rhinopithecus bieti | 35.24 | 3e-27 | 111 |
| LLPS-Caj-1702 | Callithrix jacchus | 35.22 | 6e-18 | 83.6 |
| LLPS-Scp-0348 | Schizosaccharomyces pombe | 35.17 | 9e-19 | 86.7 |
| LLPS-Ran-1418 | Rattus norvegicus | 35.12 | 2e-28 | 114 |
| LLPS-Cas-0325 | Carlito syrichta | 35.12 | 4e-29 | 116 |
| LLPS-Ict-2180 | Ictidomys tridecemlineatus | 35.12 | 3e-28 | 113 |
| LLPS-Cym-0275 | Cyanidioschyzon merolae | 35.1 | 2e-17 | 82.0 |
| LLPS-Ten-1373 | Tetraodon nigroviridis | 35.06 | 3e-24 | 102 |
| LLPS-Sah-1499 | Sarcophilus harrisii | 34.76 | 2e-26 | 109 |
| LLPS-Anp-0549 | Anas platyrhynchos | 34.71 | 6e-26 | 107 |
| LLPS-Mup-3488 | Mustela putorius furo | 34.66 | 6e-28 | 112 |
| LLPS-Mum-3933 | Mus musculus | 34.66 | 8e-29 | 115 |
| LLPS-Mea-0168 | Mesocricetus auratus | 34.66 | 4e-28 | 113 |
| LLPS-Caf-2125 | Canis familiaris | 34.66 | 7e-28 | 112 |
| LLPS-Urm-0495 | Ursus maritimus | 34.66 | 6e-28 | 112 |
| LLPS-Fec-3364 | Felis catus | 34.66 | 1e-27 | 112 |
| LLPS-Orc-2899 | Oryctolagus cuniculus | 34.66 | 2e-28 | 114 |
| LLPS-Otg-3039 | Otolemur garnettii | 34.56 | 4e-26 | 107 |
| LLPS-Kop-0032 | Komagataella pastoris | 34.38 | 3e-17 | 82.0 |
| LLPS-Dio-3545 | Dipodomys ordii | 34.26 | 1e-27 | 112 |
| LLPS-Myl-0514 | Myotis lucifugus | 34.26 | 2e-28 | 114 |
| LLPS-Chs-4184 | Chlorocebus sabaeus | 34.26 | 1e-27 | 112 |
| LLPS-Dar-4050 | Danio rerio | 34.12 | 8e-25 | 104 |
| LLPS-Aim-3163 | Ailuropoda melanoleuca | 33.72 | 1e-25 | 106 |
| LLPS-Scj-0442 | Schizosaccharomyces japonicus | 33.09 | 8e-18 | 84.0 |
| LLPS-Mod-1988 | Monodelphis domestica | 32.92 | 7e-27 | 109 |
| LLPS-Gas-0853 | Galdieria sulphuraria | 32.79 | 3e-22 | 95.5 |
| LLPS-Tum-0239 | Tuber melanosporum | 32.48 | 2e-13 | 72.8 |
| LLPS-Yal-0553 | Yarrowia lipolytica | 32.37 | 3e-20 | 90.9 |
| LLPS-Cae-0081 | Caenorhabditis elegans | 31.45 | 3e-13 | 70.9 |
| LLPS-Fus-1410 | Fusarium solani | 31.4 | 6e-06 | 50.8 |
| LLPS-Fuv-0625 | Fusarium verticillioides | 29.93 | 7e-08 | 56.6 |
| LLPS-Fuo-0631 | Fusarium oxysporum | 29.93 | 7e-08 | 56.6 |
| LLPS-Map-1178 | Magnaporthe poae | 29.85 | 4e-07 | 53.9 |
| LLPS-Gag-0515 | Gaeumannomyces graminis | 29.66 | 1e-07 | 55.8 |
| LLPS-Nec-1575 | Neurospora crassa | 29.2 | 6e-09 | 59.7 |
| LLPS-Miv-0475 | Microbotryum violaceum | 28.77 | 5e-15 | 75.9 |
| LLPS-Beb-0483 | Beauveria bassiana | 28.57 | 3e-08 | 57.8 |
| LLPS-Scc-0634 | Schizosaccharomyces cryophilus | 28.49 | 6e-16 | 78.2 |
| LLPS-Asg-1146 | Ashbya gossypii | 27.95 | 1e-15 | 77.4 |
| LLPS-Trv-1155 | Trichoderma virens | 26.89 | 7e-07 | 53.5 |
| LLPS-Trr-1142 | Trichoderma reesei | 26.89 | 7e-07 | 53.5 |