LLPS-Thc-1304
TCM_001934
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | ATP-dependent RNA helicase, putative isoform 1 |
| Gene Name: | TCM_001934 |
| Ensembl Gene: | TCM_001934 |
| Ensembl Protein: | EOX93090 |
| Organism: | Theobroma cacao |
| Taxa ID: | 3641 |
| LLPS Type: | Others |
▼ PROPERTY
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| P-body, Stress granule, Others | Predicted from orthologs | (View) |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | EOX93090 | EOX93090 |
| Ensembl | EOX93088 | EOX93088 |
| Ensembl | EOX93089 | EOX93089 |
| UniProt | A0A061DSX9, A0A061DSX9_THECC | |
| GeneBank | CM001879 | EOX93090.1, EOX93088.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MGKKKSVAES TRIQLAQTLE KFRESKDEVY TFDSTLSNKE RALVHRACRK MGMKSKSSGR 60 61 GSQRRISVYK IRGKVDNMKG MESLTNMTFS GGAQVVLQDL FTHYPPDDGE LGEKLVGKYS 120 121 GKTAKVRKKK DDIFSKPLMS DTEIAEKVKT LASTIEKDPN LRQINEEMSK LPIASFRDVI 180 181 TSTVESHQVV LISGETGCGK TTQVPQYLLD YMWGKGKACK VVCTQPRRIS ATSVSERISN 240 241 ERGENVGNDV GYKIRLERKG GRHSSIVFCT NGVLLRVLVS NSRSKREDIS DMTHIIMDEI 300 301 HERDCFCDFM LAIIRDILPS YPHLRLVLMS ATLDAERFSQ YFGGCPIIHV PGFTYPVKAF 360 361 YLEDVLSILK SADNNHLISA SASFPNEDPE LTEEDKIALD EAILACSTDE FDPLLELVSV 420 421 EGGSKVHNYQ HSLTGLTPLM VFAGKGRVAD VCMLLSFGVD CHLRSKDGKR ALEWAEQENQ 480 481 QEAAEIIKKH MQSLLSNSGE QQQLLDKYIE AVDPEIIDVV LIEQLLRKIC IDTNEGAILV 540 541 FLPGWEDINR TREKLLANPF FKDSSRFIII SLHSMVPSAE QKKVFKRPPF GCRKIVLSTN 600 601 IAESSITIDD VVYVIDSGRM KEKSYDPYNN VSTLQSSWVS KANAKQREGR AGRCQPGTCY 660 661 HLYSKLRAAS MPDFQVPEIK RMPIEELCLQ VKLLDPNCKV ENFLQKTLDP PVSEAIRNAV 720 721 SVLQDIGAFS YDEELTELGE KLGYLPVHPL TSKMLFFAIL MNCLDPALTL ACASDFRDPF 780 781 VLPMFPNDKK KAAAAREELA SLYGGQSDQL AVIAAFECWK HAKERGQEGR FCSKYFVSSS 840 841 TMNMLFGMRK QLQAELMRFG FIPDDVSSCS LNAHDPGILH AVLVAGLYPM VGRLLPLRQG 900 901 KRFVVETAGG SKVRLHTHSI NSKLSLKQSN DCPLIMYDEI TRGDGGMHIR NCTVIGPLPL 960 961 LLLATEIAVA PAKGNDDNED DDDDDDDDDG SDDADECDTD GDEMLMVSKS GGNEEKVMSS 1020 1021 PDNSVMVVVD RWLSFRSTAF DVAQIYCLRE RLSAAILSKV LHPHQVLTPV LGASIYAIAC 1080 1081 ILSYDGLSGI STRAESVDSL TLKVRATEID KPLPGRRGSG PNTNRLPVDR SSYWKAEVHA 1140 1141 YEAVTDGTEP SSCNKQAPVM SIGTSLQQAS SQGPISVASG SGVSKLQGQG PREESCKRRR 1200 1201 GSGKRSK 1207 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGGAAAGA AGAAAAGCGT CGCTGAATCC ACGAGGATCC AATTGGCCCA AACACTTGAG 60 61 AAGTTTCGTG AATCGAAAGA TGAAGTGTAT ACCTTTGATT CCACCCTTTC AAACAAAGAA 120 121 CGAGCACTCG TGCACAGGGC ATGCCGGAAA ATGGGTATGA AATCCAAAAG TTCTGGGCGT 180 181 GGGAGCCAGA GACGTATCTC TGTCTACAAA ATTAGAGGGA AAGTCGACAA TATGAAAGGG 240 241 ATGGAAAGTC TCACGAATAT GACATTTTCA GGGGGGGCAC AAGTGGTTTT GCAGGACTTA 300 301 TTTACACATT ATCCACCTGA TGATGGAGAG CTTGGAGAGA AATTAGTTGG AAAATATAGT 360 361 GGAAAAACTG CTAAAGTACG AAAGAAGAAA GATGATATTT TCTCCAAGCC ATTGATGAGT 420 421 GACACTGAGA TTGCAGAGAA GGTTAAAACA CTTGCATCTA CGATAGAAAA GGATCCTAAT 480 481 TTGAGACAGA TTAATGAAGA GATGTCGAAG CTGCCAATTG CTTCATTTAG GGATGTGATT 540 541 ACGTCCACAG TAGAATCTCA TCAGGTTGTG CTCATTTCTG GTGAGACTGG ATGTGGAAAG 600 601 ACCACACAGG TCCCGCAATA TCTATTGGAC TATATGTGGG GAAAAGGCAA GGCTTGTAAA 660 661 GTAGTGTGTA CTCAGCCTCG GCGTATATCA GCTACATCAG TGTCTGAGAG AATATCTAAT 720 721 GAAAGAGGAG AAAATGTTGG GAATGATGTT GGATACAAGA TTCGCTTGGA AAGGAAAGGT 780 781 GGTCGGCACT CATCAATTGT CTTCTGCACG AATGGGGTAT TATTGAGGGT GCTGGTTTCG 840 841 AACAGTAGGT CGAAGAGAGA AGACATTTCT GACATGACTC ACATTATTAT GGATGAAATT 900 901 CATGAAAGGG ACTGCTTCTG TGATTTCATG CTGGCAATTA TCAGGGACAT ACTTCCTTCA 960 961 TATCCTCACC TACGGCTGGT ATTAATGAGT GCTACTCTTG ATGCTGAACG CTTTTCGCAG 1020 1021 TATTTTGGTG GTTGCCCAAT TATCCATGTC CCTGGGTTTA CATATCCTGT AAAAGCTTTC 1080 1081 TATTTGGAGG ATGTGCTTTC CATCTTGAAA TCTGCAGACA ATAATCATCT TATTTCAGCT 1140 1141 AGTGCAAGTT TCCCAAATGA AGACCCAGAA TTAACAGAAG AAGATAAGAT TGCATTAGAT 1200 1201 GAAGCTATTT TGGCTTGTTC AACTGATGAG TTTGATCCCC TTCTCGAGTT GGTTTCTGTT 1260 1261 GAAGGAGGGT CAAAGGTTCA TAATTATCAG CATTCTTTGA CTGGACTAAC ACCTTTAATG 1320 1321 GTGTTTGCTG GAAAGGGTAG GGTGGCGGAT GTTTGCATGC TCCTCTCATT TGGTGTGGAC 1380 1381 TGCCATCTAA GGTCCAAGGA TGGGAAAAGA GCTTTGGAGT GGGCCGAGCA GGAAAACCAG 1440 1441 CAGGAAGCTG CTGAAATAAT AAAAAAACAT ATGCAAAGTC TCCTTTCCAA TTCTGGGGAA 1500 1501 CAACAACAGT TACTGGATAA GTATATAGAG GCAGTTGATC CAGAAATTAT TGATGTTGTT 1560 1561 CTTATTGAGC AGTTATTAAG GAAGATATGC ATCGATACAA ATGAAGGAGC TATCCTTGTT 1620 1621 TTCCTTCCTG GGTGGGAGGA TATAAATAGA ACCCGAGAGA AATTACTTGC CAACCCCTTT 1680 1681 TTCAAAGATT CTTCCAGATT TATTATAATA TCTCTGCACT CAATGGTTCC ATCTGCAGAG 1740 1741 CAAAAGAAGG TTTTTAAACG TCCACCCTTT GGTTGCCGCA AAATTGTCCT TTCAACCAAT 1800 1801 ATTGCTGAAA GTTCCATTAC GATTGATGAC GTTGTCTATG TTATAGATAG TGGTCGAATG 1860 1861 AAAGAGAAAA GCTATGATCC TTATAATAAT GTATCAACTC TTCAGTCTTC TTGGGTCTCC 1920 1921 AAAGCAAATG CCAAGCAACG AGAGGGGCGT GCAGGCCGAT GTCAGCCTGG AACTTGTTAT 1980 1981 CATCTTTATT CAAAGCTTCG AGCAGCTTCT ATGCCAGACT TTCAAGTTCC AGAAATTAAG 2040 2041 AGAATGCCGA TTGAGGAGCT TTGTTTGCAG GTGAAGTTGC TTGACCCAAA TTGCAAAGTA 2100 2101 GAGAATTTCT TGCAAAAGAC ATTGGACCCT CCTGTTTCTG AAGCTATACG TAATGCAGTT 2160 2161 AGTGTTCTTC AAGATATTGG GGCTTTCTCA TATGATGAGG AACTGACTGA ACTTGGAGAG 2220 2221 AAGCTTGGTT ATCTTCCTGT TCATCCATTG ACAAGCAAGA TGCTTTTCTT TGCCATATTG 2280 2281 ATGAACTGCC TTGATCCGGC TTTAACCCTA GCATGTGCCT CAGACTTCAG GGATCCATTT 2340 2341 GTACTTCCCA TGTTTCCTAA CGATAAGAAG AAGGCTGCCG CTGCTAGGGA AGAGCTTGCA 2400 2401 TCATTGTATG GTGGGCAAAG TGATCAGCTG GCAGTCATAG CTGCTTTTGA GTGCTGGAAG 2460 2461 CATGCAAAAG AAAGGGGTCA AGAAGGACGT TTTTGTTCGA AATACTTCGT CTCTTCAAGC 2520 2521 ACCATGAATA TGCTGTTTGG CATGCGGAAG CAGCTCCAGG CTGAACTGAT GCGGTTTGGG 2580 2581 TTTATTCCAG ATGATGTCTC AAGTTGTAGT CTGAATGCAC ATGATCCTGG GATACTTCAC 2640 2641 GCAGTCCTTG TGGCTGGTTT GTATCCAATG GTGGGGAGGT TGCTCCCTTT AAGACAGGGT 2700 2701 AAACGATTTG TTGTAGAGAC TGCTGGTGGC AGTAAAGTTC GGTTACACAC TCACTCAATT 2760 2761 AATTCTAAGT TATCACTTAA GCAATCCAAC GATTGCCCTT TGATAATGTA TGATGAAATA 2820 2821 ACCCGTGGAG ATGGGGGTAT GCACATTAGG AACTGTACTG TCATTGGGCC ACTTCCATTG 2880 2881 TTACTGCTTG CAACAGAGAT CGCTGTGGCT CCTGCTAAAG GGAATGATGA CAACGAAGAT 2940 2941 GATGATGATG ACGACGACGA TGATGATGGA AGTGATGATG CTGATGAGTG TGACACCGAT 3000 3001 GGAGATGAAA TGTTGATGGT TAGTAAGTCA GGTGGAAATG AAGAGAAGGT CATGTCCTCT 3060 3061 CCTGATAATT CTGTTATGGT AGTTGTTGAT CGGTGGCTTT CATTCAGATC AACAGCATTT 3120 3121 GATGTTGCTC AAATCTACTG CTTGAGAGAG CGATTATCTG CAGCAATCTT ATCCAAGGTT 3180 3181 TTGCATCCAC ACCAAGTTCT TACTCCTGTT CTTGGGGCTT CTATATATGC AATAGCCTGC 3240 3241 ATTCTGTCTT ATGATGGGCT ATCAGGTATC TCAACCCGAG CAGAATCTGT GGATTCACTG 3300 3301 ACTTTGAAGG TACGTGCTAC TGAGATTGAC AAACCCTTGC CAGGGAGGAG AGGTTCGGGT 3360 3361 CCAAATACAA ATAGGTTACC AGTTGACAGG TCAAGTTACT GGAAAGCTGA AGTCCATGCA 3420 3421 TATGAGGCTG TAACAGATGG AACTGAGCCG TCAAGCTGCA ACAAACAGGC ACCAGTAATG 3480 3481 TCAATTGGGA CGAGCCTACA GCAGGCTTCA TCCCAAGGCC CCATTTCAGT TGCTTCTGGT 3540 3541 TCAGGCGTGT CTAAATTACA GGGTCAGGGT CCCAGGGAAG AGTCTTGCAA GCGGCGACGT 3600 3601 GGGAGCGGGA AGAGGTCGAA ATAG 3624 |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Coc-2275 | Corchorus capsularis | 82.39 | 0.0 | 1895 |
| LLPS-Gor-0042 | Gossypium raimondii | 78.02 | 0.0 | 1814 |
| LLPS-Nia-1489 | Nicotiana attenuata | 72.39 | 0.0 | 1539 |
| LLPS-Dac-0850 | Daucus carota | 72.36 | 0.0 | 1094 |
| LLPS-Viv-2125 | Vitis vinifera | 70.67 | 0.0 | 1595 |
| LLPS-Sol-0423 | Solanum lycopersicum | 70.32 | 0.0 | 1510 |
| LLPS-Pot-1236 | Populus trichocarpa | 70.19 | 0.0 | 1594 |
| LLPS-Mae-2241 | Manihot esculenta | 69.59 | 0.0 | 1600 |
| LLPS-Prp-1521 | Prunus persica | 69.37 | 0.0 | 1470 |
| LLPS-Glm-0912 | Glycine max | 67.97 | 0.0 | 1457 |
| LLPS-Via-0671 | Vigna angularis | 67.94 | 0.0 | 1485 |
| LLPS-Cus-2031 | Cucumis sativus | 67.53 | 0.0 | 1459 |
| LLPS-Phv-1354 | Phaseolus vulgaris | 66.87 | 0.0 | 1440 |
| LLPS-Vir-0072 | Vigna radiata | 66.46 | 0.0 | 1276 |
| LLPS-Hea-0024 | Helianthus annuus | 65.51 | 0.0 | 1415 |
| LLPS-Arl-2438 | Arabidopsis lyrata | 64.62 | 0.0 | 1379 |
| LLPS-Orbr-0269 | Oryza brachyantha | 64.58 | 0.0 | 1340 |
| LLPS-Art-2728 | Arabidopsis thaliana | 64.53 | 0.0 | 1358 |
| LLPS-Met-1107 | Medicago truncatula | 64.25 | 0.0 | 1363 |
| LLPS-Tra-1020 | Triticum aestivum | 64.07 | 0.0 | 1369 |
| LLPS-Brr-0857 | Brassica rapa | 63.95 | 0.0 | 1357 |
| LLPS-Lep-0696 | Leersia perrieri | 63.87 | 0.0 | 1380 |
| LLPS-Sob-0594 | Sorghum bicolor | 63.09 | 0.0 | 1363 |
| LLPS-Sei-0533 | Setaria italica | 62.8 | 0.0 | 1375 |
| LLPS-Ori-0884 | Oryza indica | 62.8 | 0.0 | 1368 |
| LLPS-Org-0873 | Oryza glaberrima | 62.78 | 0.0 | 1382 |
| LLPS-Hov-0023 | Hordeum vulgare | 62.77 | 0.0 | 1339 |
| LLPS-Ors-0427 | Oryza sativa | 62.69 | 0.0 | 1382 |
| LLPS-Brd-1230 | Brachypodium distachyon | 62.04 | 0.0 | 1373 |
| LLPS-Zem-1508 | Zea mays | 61.7 | 0.0 | 1345 |
| LLPS-Orp-0686 | Oryza punctata | 61.62 | 0.0 | 1288 |
| LLPS-Orb-2122 | Oryza barthii | 60.49 | 0.0 | 1282 |
| LLPS-Orr-1882 | Oryza rufipogon | 59.39 | 0.0 | 1258 |
| LLPS-Orni-0109 | Oryza nivara | 59.15 | 0.0 | 1266 |
| LLPS-Orgl-1580 | Oryza glumaepatula | 59.07 | 0.0 | 1263 |
| LLPS-Orm-1181 | Oryza meridionalis | 59.03 | 0.0 | 1246 |
| LLPS-Amt-0757 | Amborella trichopoda | 58.44 | 0.0 | 1241 |
| LLPS-Tru-1211 | Triticum urartu | 58.41 | 0.0 | 1241 |
| LLPS-Bro-0553 | Brassica oleracea | 57.75 | 0.0 | 1266 |
| LLPS-Brn-0103 | Brassica napus | 57.39 | 0.0 | 1264 |
| LLPS-Sem-1602 | Selaginella moellendorffii | 53.39 | 0.0 | 939 |
| LLPS-Php-1747 | Physcomitrella patens | 50.53 | 0.0 | 1045 |
| LLPS-Asm-3184 | Astyanax mexicanus | 49.51 | 4e-54 | 209 |
| LLPS-Ten-1969 | Tetraodon nigroviridis | 49.26 | 2e-50 | 199 |
| LLPS-Mea-0922 | Mesocricetus auratus | 49.09 | 7e-58 | 221 |
| LLPS-Gaa-2505 | Gasterosteus aculeatus | 49.01 | 2e-51 | 202 |
| LLPS-Poa-1040 | Pongo abelii | 48.54 | 1e-54 | 209 |
| LLPS-Dio-0467 | Dipodomys ordii | 48.54 | 1e-54 | 211 |
| LLPS-Caj-2625 | Callithrix jacchus | 48.54 | 2e-54 | 211 |
| LLPS-Dar-2928 | Danio rerio | 48.29 | 9e-52 | 203 |
| LLPS-Xim-0395 | Xiphophorus maculatus | 48.26 | 6e-45 | 181 |
| LLPS-Mum-4477 | Mus musculus | 48.17 | 4e-57 | 219 |
| LLPS-Eqc-2236 | Equus caballus | 48.06 | 2e-54 | 211 |
| LLPS-Anc-1610 | Anolis carolinensis | 47.93 | 6e-27 | 123 |
| LLPS-Orn-0331 | Oreochromis niloticus | 47.83 | 9e-46 | 184 |
| LLPS-Cii-0563 | Ciona intestinalis | 47.83 | 4e-54 | 204 |
| LLPS-Ran-1287 | Rattus norvegicus | 47.71 | 8e-56 | 215 |
| LLPS-Icp-3525 | Ictalurus punctatus | 47.4 | 1e-38 | 160 |
| LLPS-Orc-1695 | Oryctolagus cuniculus | 47.3 | 3e-55 | 214 |
| LLPS-Nol-2034 | Nomascus leucogenys | 46.93 | 1e-54 | 211 |
| LLPS-Aon-1817 | Aotus nancymaae | 46.85 | 1e-54 | 211 |
| LLPS-Otg-0151 | Otolemur garnettii | 46.79 | 2e-54 | 211 |
| LLPS-Pat-4238 | Pan troglodytes | 46.72 | 7e-55 | 212 |
| LLPS-Hos-2035 | Homo sapiens | 46.72 | 7e-55 | 212 |
| LLPS-Gog-4804 | Gorilla gorilla | 46.72 | 6e-55 | 212 |
| LLPS-Cap-4041 | Cavia porcellus | 46.48 | 4e-52 | 205 |
| LLPS-Orl-3134 | Oryzias latipes | 46.43 | 1e-53 | 208 |
| LLPS-Mam-3531 | Macaca mulatta | 46.29 | 4e-54 | 210 |
| LLPS-Pap-4711 | Pan paniscus | 46.29 | 4e-55 | 213 |
| LLPS-Man-4834 | Macaca nemestrina | 46.29 | 4e-54 | 210 |
| LLPS-Rhb-3042 | Rhinopithecus bieti | 46.29 | 1e-54 | 211 |
| LLPS-Mal-3573 | Mandrillus leucophaeus | 46.29 | 4e-54 | 210 |
| LLPS-Maf-2381 | Macaca fascicularis | 46.29 | 4e-54 | 210 |
| LLPS-Chs-3348 | Chlorocebus sabaeus | 46.29 | 4e-54 | 210 |
| LLPS-Cea-3253 | Cercocebus atys | 46.29 | 4e-54 | 210 |
| LLPS-Loa-3857 | Loxodonta africana | 45.54 | 5e-51 | 201 |
| LLPS-Fud-2159 | Fukomys damarensis | 45.54 | 6e-52 | 204 |
| LLPS-Ict-3821 | Ictidomys tridecemlineatus | 44.78 | 1e-110 | 377 |
| LLPS-Ova-2653 | Ovis aries | 44.78 | 1e-111 | 381 |
| LLPS-Tag-1824 | Taeniopygia guttata | 44.72 | 5e-54 | 211 |
| LLPS-Urm-0274 | Ursus maritimus | 44.56 | 3e-111 | 379 |
| LLPS-Fec-1696 | Felis catus | 44.56 | 2e-111 | 379 |
| LLPS-Bot-4526 | Bos taurus | 44.56 | 9e-112 | 380 |
| LLPS-Sus-1424 | Sus scrofa | 44.56 | 4e-112 | 379 |
| LLPS-Pof-2124 | Poecilia formosa | 44.5 | 1e-49 | 197 |
| LLPS-Fia-0694 | Ficedula albicollis | 44.42 | 1e-107 | 367 |
| LLPS-Aim-4348 | Ailuropoda melanoleuca | 44.35 | 6e-111 | 378 |
| LLPS-Mup-1840 | Mustela putorius furo | 44.35 | 6e-111 | 378 |
| LLPS-Ora-0706 | Ornithorhynchus anatinus | 44.26 | 2e-54 | 210 |
| LLPS-Sah-2287 | Sarcophilus harrisii | 44.26 | 5e-52 | 205 |
| LLPS-Caf-3116 | Canis familiaris | 44.14 | 1e-109 | 377 |
| LLPS-Lac-3189 | Latimeria chalumnae | 43.32 | 8e-52 | 204 |
| LLPS-Mod-2318 | Monodelphis domestica | 42.92 | 2e-53 | 207 |
| LLPS-Scf-1965 | Scleropages formosus | 42.59 | 5e-44 | 179 |
| LLPS-Leo-0159 | Lepisosteus oculatus | 42.36 | 1e-43 | 177 |
| LLPS-Osl-1069 | Ostreococcus lucimarinus | 41.43 | 0.0 | 679 |
| LLPS-Pes-1337 | Pelodiscus sinensis | 40.43 | 4e-47 | 189 |
| LLPS-Gaga-1900 | Gallus gallus | 39.86 | 7e-55 | 213 |
| LLPS-Anp-0622 | Anas platyrhynchos | 39.86 | 7e-55 | 213 |
| LLPS-Tar-3014 | Takifugu rubripes | 36.16 | 0.0 | 599 |
| LLPS-Meg-1642 | Meleagris gallopavo | 35.79 | 4e-44 | 179 |
| LLPS-Scm-0833 | Scophthalmus maximus | 35.39 | 3e-173 | 549 |
| LLPS-Myl-3031 | Myotis lucifugus | 33.78 | 0.0 | 602 |
| LLPS-Paa-4282 | Papio anubis | 33.26 | 4e-130 | 439 |
| LLPS-Cas-0166 | Carlito syrichta | 32.2 | 9e-121 | 413 |
| LLPS-Xet-0845 | Xenopus tropicalis | 32.2 | 1e-160 | 523 |