LLPS-Sol-0230
PDF1A
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | Peptide deformylase 1A, chloroplastic |
| Gene Name: | PDF1A |
| Ensembl Gene: | Solyc07g015860.3 |
| Ensembl Protein: | Solyc07g015860.3.1 |
| Organism: | Solanum lycopersicum |
| Taxa ID: | 4081 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nucleolus | Predicted from orthologs | (View) |
▼ FUNCTION
| Removes the formyl group from the N-terminal Met of newly synthesized proteins. |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | Solyc07g015860.3.1 | Solyc07g015860.3.1 |
| UniProt | Q9FUZ0, DEF1A_SOLLC | |
| GeneBank | AF271258 | AAG33981.1 |
| RefSeq | NM_001247774.2, NM_001316977.1, XM_010324864.2, XM_010324865.2 | NP_001234703.1, NP_001303906.1, XP_010323166.1, XP_010323167.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MMERFPRLAQ RVLSVPFTPK YLKSCKKTNP LTSHLMQLRG SQRPIFIQWN LQGRPSVCTD 60 61 LISKKNYSSA TARAGWFLGL GEKKKQAMPD IVKAGDPVLH EPSQDIPLEE IGSERIQKII 120 121 EEMVKVMRNA PGVGLAAPQI GIPLKIIVLE DTNEYISYAP KDETKAQDRR PFGLLVIINP 180 181 KLKKKGNKTA LFFEGCLSVD GFRAVVERHL EVEVTGLDRN GKAIKVDASG WQARILQHEY 240 241 DHLDGTLYVD KMAPRTFRTV ENLDLPLAAG CPKLGVC 277 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGATGGAGA GATTTCCACG GTTGGCACAA CGCGTTCTTT CCGTTCCATT CACTCCAAAA 60 61 TACTTGAAAT CTTGTAAGAA AACGAATCCT CTGACCTCCC ACTTAATGCA ACTCCGTGGC 120 121 TCCCAGAGAC CAATATTCAT ACAATGGAAT CTGCAGGGAA GACCTTCTGT ATGCACTGAC 180 181 TTAATATCCA AGAAAAATTA CAGTTCTGCC ACTGCTCGGG CAGGTTGGTT TCTGGGTTTA 240 241 GGAGAGAAAA AAAAGCAAGC CATGCCTGAC ATTGTGAAAG CCGGTGACCC TGTTCTTCAT 300 301 GAACCGTCTC AGGACATTCC TCTTGAGGAG ATTGGGTCAG AACGAATCCA AAAGATTATA 360 361 GAGGAGATGG TGAAGGTTAT GAGAAATGCA CCCGGAGTTG GTCTTGCCGC TCCTCAAATT 420 421 GGTATTCCTT TGAAGATAAT TGTGCTGGAA GACACAAATG AGTACATAAG CTATGCTCCT 480 481 AAAGATGAAA CCAAAGCACA GGACAGACGT CCATTTGGTC TCCTGGTTAT TATAAATCCA 540 541 AAGCTTAAAA AGAAGGGCAA TAAAACTGCA TTGTTTTTCG AGGGCTGCTT GAGTGTTGAT 600 601 GGGTTCAGAG CAGTTGTGGA AAGACACCTA GAGGTAGAGG TTACTGGTTT GGATCGAAAT 660 661 GGCAAAGCAA TCAAAGTAGA TGCTTCAGGA TGGCAGGCTC GCATCTTGCA GCACGAATAT 720 721 GACCACCTAG ACGGAACTCT TTATGTTGAC AAGATGGCTC CTAGAACCTT CAGGACTGTA 780 781 GAGAACTTGG ACTTGCCTCT TGCAGCTGGC TGTCCTAAAT TGGGAGTGTG CTAG 834 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Chloroplast | |
Cellular Component | Chloroplast stroma | |
Cellular Component | Mitochondrion | |
Cellular Component | Plant-type cell wall | |
Molecular Function | Metal ion binding | |
Molecular Function | Peptide deformylase activity | |
Biological Process | Co-translational protein modification | |
Biological Process | N-terminal protein amino acid modification | |
Biological Process | Peptidyl-methionine modification | |
Biological Process | Translation |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Sot-1836 | Solanum tuberosum | 96.01 | 0.0 | 556 |
| LLPS-Nia-2121 | Nicotiana attenuata | 90.18 | 0.0 | 519 |
| LLPS-Mua-1752 | Musa acuminata | 85.06 | 2e-90 | 272 |
| LLPS-Dac-1436 | Daucus carota | 83.01 | 4e-121 | 355 |
| LLPS-Thc-2414 | Theobroma cacao | 82.69 | 2e-123 | 360 |
| LLPS-Pot-0061 | Populus trichocarpa | 81.25 | 2e-121 | 356 |
| LLPS-Gor-0678 | Gossypium raimondii | 80.77 | 6e-121 | 354 |
| LLPS-Coc-2143 | Corchorus capsularis | 80.29 | 7e-122 | 356 |
| LLPS-Ori-2324 | Oryza indica | 79.74 | 2e-85 | 259 |
| LLPS-Glm-1031 | Glycine max | 78.37 | 6e-116 | 340 |
| LLPS-Brr-2808 | Brassica rapa | 77.56 | 1e-111 | 330 |
| LLPS-Ors-0728 | Oryza sativa | 77.31 | 2e-62 | 199 |
| LLPS-Bro-0989 | Brassica oleracea | 76.56 | 4e-112 | 331 |
| LLPS-Prp-1417 | Prunus persica | 75.98 | 9e-122 | 356 |
| LLPS-Phv-2489 | Phaseolus vulgaris | 75.96 | 8e-113 | 333 |
| LLPS-Brd-2303 | Brachypodium distachyon | 75.94 | 1e-101 | 304 |
| LLPS-Amt-2300 | Amborella trichopoda | 75.93 | 5e-113 | 334 |
| LLPS-Sob-2543 | Sorghum bicolor | 75.4 | 4e-101 | 303 |
| LLPS-Orr-1038 | Oryza rufipogon | 74.87 | 5e-99 | 298 |
| LLPS-Org-1380 | Oryza glaberrima | 74.87 | 5e-99 | 298 |
| LLPS-Lep-0490 | Leersia perrieri | 74.87 | 1e-95 | 296 |
| LLPS-Orb-1711 | Oryza barthii | 74.87 | 5e-99 | 298 |
| LLPS-Orni-0318 | Oryza nivara | 74.87 | 5e-99 | 298 |
| LLPS-Zem-1023 | Zea mays | 74.33 | 9e-99 | 297 |
| LLPS-Orgl-2243 | Oryza glumaepatula | 74.33 | 1e-98 | 297 |
| LLPS-Via-0130 | Vigna angularis | 74.3 | 5e-112 | 331 |
| LLPS-Vir-1364 | Vigna radiata | 74.3 | 2e-112 | 334 |
| LLPS-Brn-2783 | Brassica napus | 74.21 | 5e-114 | 336 |
| LLPS-Hov-2141 | Hordeum vulgare | 74.19 | 1e-98 | 297 |
| LLPS-Hea-1639 | Helianthus annuus | 74.03 | 1e-113 | 335 |
| LLPS-Orbr-1940 | Oryza brachyantha | 73.8 | 1e-97 | 298 |
| LLPS-Tru-1985 | Triticum urartu | 73.26 | 3e-97 | 293 |
| LLPS-Met-2418 | Medicago truncatula | 73.08 | 5e-105 | 313 |
| LLPS-Tra-0792 | Triticum aestivum | 72.73 | 3e-97 | 293 |
| LLPS-Sei-1218 | Setaria italica | 72.73 | 8e-96 | 290 |
| LLPS-Art-0645 | Arabidopsis thaliana | 69.78 | 2e-107 | 319 |
| LLPS-Arl-0323 | Arabidopsis lyrata | 69.7 | 2e-108 | 322 |
| LLPS-Mae-0342 | Manihot esculenta | 65.94 | 6e-120 | 351 |
| LLPS-Php-0872 | Physcomitrella patens | 65.35 | 8e-90 | 274 |
| LLPS-Viv-1169 | Vitis vinifera | 64.77 | 1e-116 | 343 |
| LLPS-Cus-1915 | Cucumis sativus | 64.62 | 2e-119 | 350 |
| LLPS-Orp-1143 | Oryza punctata | 63.8 | 1e-92 | 283 |
| LLPS-Sem-0603 | Selaginella moellendorffii | 55.93 | 1e-38 | 139 |
| LLPS-Osl-0634 | Ostreococcus lucimarinus | 48.92 | 1e-52 | 179 |
| LLPS-Scm-1643 | Scophthalmus maximus | 47.98 | 2e-44 | 157 |
| LLPS-Chr-0210 | Chlamydomonas reinhardtii | 46.19 | 2e-53 | 179 |
| LLPS-Fia-3472 | Ficedula albicollis | 43.7 | 9e-33 | 124 |
| LLPS-Tar-3062 | Takifugu rubripes | 43.53 | 3e-40 | 146 |
| LLPS-Gaa-3582 | Gasterosteus aculeatus | 43.11 | 2e-38 | 140 |
| LLPS-Tag-1779 | Taeniopygia guttata | 43.08 | 6e-31 | 118 |
| LLPS-Scf-2240 | Scleropages formosus | 42.69 | 2e-40 | 147 |
| LLPS-Orn-3924 | Oreochromis niloticus | 42.6 | 7e-40 | 145 |
| LLPS-Gaga-3533 | Gallus gallus | 42.52 | 6e-30 | 118 |
| LLPS-Pof-3794 | Poecilia formosa | 42.51 | 1e-35 | 133 |
| LLPS-Xim-3886 | Xiphophorus maculatus | 42.51 | 5e-37 | 137 |
| LLPS-Leo-3418 | Lepisosteus oculatus | 41.95 | 5e-44 | 155 |
| LLPS-Fud-3699 | Fukomys damarensis | 41.73 | 4e-30 | 116 |
| LLPS-Lac-1496 | Latimeria chalumnae | 41.71 | 9e-42 | 149 |
| LLPS-Orl-1889 | Oryzias latipes | 41.32 | 1e-37 | 139 |
| LLPS-Sah-2532 | Sarcophilus harrisii | 41.3 | 7e-30 | 115 |
| LLPS-Icp-2066 | Ictalurus punctatus | 41.18 | 2e-38 | 141 |
| LLPS-Nol-1151 | Nomascus leucogenys | 41.04 | 9e-41 | 147 |
| LLPS-Aon-1199 | Aotus nancymaae | 40.59 | 4e-40 | 145 |
| LLPS-Xet-0575 | Xenopus tropicalis | 40.57 | 7e-44 | 155 |
| LLPS-Rhb-3224 | Rhinopithecus bieti | 40.46 | 1e-36 | 136 |
| LLPS-Paa-3349 | Papio anubis | 40.46 | 1e-40 | 147 |
| LLPS-Anc-3006 | Anolis carolinensis | 40.0 | 6e-39 | 141 |
| LLPS-Pat-4095 | Pan troglodytes | 40.0 | 3e-38 | 140 |
| LLPS-Hos-3668 | Homo sapiens | 40.0 | 2e-38 | 141 |
| LLPS-Drm-1890 | Drosophila melanogaster | 40.0 | 1e-34 | 129 |
| LLPS-Caj-2375 | Callithrix jacchus | 40.0 | 2e-39 | 143 |
| LLPS-Man-1905 | Macaca nemestrina | 39.33 | 1e-40 | 147 |
| LLPS-Mal-1811 | Mandrillus leucophaeus | 39.33 | 5e-41 | 148 |
| LLPS-Cea-1678 | Cercocebus atys | 39.33 | 9e-41 | 147 |
| LLPS-Chs-3799 | Chlorocebus sabaeus | 39.33 | 3e-40 | 145 |
| LLPS-Maf-4415 | Macaca fascicularis | 39.33 | 1e-40 | 147 |
| LLPS-Ten-2608 | Tetraodon nigroviridis | 39.22 | 4e-43 | 152 |
| LLPS-Asm-0998 | Astyanax mexicanus | 38.86 | 1e-40 | 147 |
| LLPS-Poa-3649 | Pongo abelii | 38.8 | 3e-39 | 142 |
| LLPS-Ran-0118 | Rattus norvegicus | 38.64 | 2e-37 | 138 |
| LLPS-Mum-3868 | Mus musculus | 38.64 | 9e-37 | 136 |
| LLPS-Loa-1798 | Loxodonta africana | 38.46 | 7e-39 | 142 |
| LLPS-Cap-4592 | Cavia porcellus | 38.29 | 9e-38 | 139 |
| LLPS-Dar-0426 | Danio rerio | 37.37 | 2e-39 | 144 |
| LLPS-Bot-0633 | Bos taurus | 37.29 | 1e-37 | 139 |
| LLPS-Ova-0230 | Ovis aries | 37.29 | 1e-37 | 139 |
| LLPS-Cas-2158 | Carlito syrichta | 37.21 | 3e-35 | 132 |
| LLPS-Eqc-4693 | Equus caballus | 37.14 | 5e-37 | 137 |
| LLPS-Fec-0287 | Felis catus | 36.72 | 3e-37 | 137 |
| LLPS-Ict-1562 | Ictidomys tridecemlineatus | 36.57 | 2e-36 | 136 |
| LLPS-Myl-1028 | Myotis lucifugus | 36.46 | 8e-38 | 138 |
| LLPS-Mod-3034 | Monodelphis domestica | 36.0 | 2e-34 | 130 |
| LLPS-Caf-2324 | Canis familiaris | 35.59 | 8e-37 | 137 |
| LLPS-Tut-0400 | Tursiops truncatus | 34.46 | 5e-35 | 132 |