LLPS-Sem-2259
SELMODRAFT_227421
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | 50S ribosomal protein L20 |
| Gene Name: | SELMODRAFT_227421, SELMODRAFT_271988 |
| Ensembl Gene: | SELMODRAFT_227421 |
| Ensembl Protein: | EFJ35365 |
| Organism: | Selaginella moellendorffii |
| Taxa ID: | 88036 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nucleolus | Predicted from orthologs | (View) |
▼ FUNCTION
| Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | EFJ35365 | EFJ35365 |
| UniProt | D8QX84, D8QX84_SELML | |
| GeneBank | GL377652, GL377568 | EFJ35365.1, EFJ10624.1 |
| RefSeq | XM_002963448.1, XM_002988159.1 | XP_002963494.1, XP_002988205.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MHKDTILKLA RGFRGRAKNC IRIARERVEK ALQYAYRDRR SKKRDMRSLW IMRINAGARI 60 61 YGLRYSNFMH GLNRENIQLN RKVLSEIAMN EPYSFKCLAD ISDQAIKAKA AAARPKLVP 119 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGCACAAGG ACACGATCTT GAAGCTTGCC AGGGGATTCC GGGGCCGCGC CAAGAACTGC 60 61 ATCCGAATCG CCCGCGAGCG CGTCGAGAAG GCGCTGCAGT ATGCGTATCG CGATCGGCGC 120 121 AGCAAAAAGA GGGACATGCG CAGCCTGTGG ATCATGAGGA TCAATGCGGG CGCGCGGATC 180 181 TATGGGCTGA GGTACAGTAA TTTCATGCAC GGCCTCAATC GCGAGAACAT CCAGCTCAAT 240 241 CGCAAGGTTC TTTCCGAGAT CGCGATGAAC GAGCCCTACT CCTTCAAATG CTTGGCGGAT 300 301 ATCAGCGATC AAGCCATCAA GGCCAAGGCC GCCGCTGCCA GGCCCAAGCT TGTCCCTTGA 360 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Ribosome | |
Molecular Function | RRNA binding | |
Molecular Function | Structural constituent of ribosome | |
Biological Process | Translation |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Met-1525 | Medicago truncatula | 82.65 | 2e-43 | 144 |
| LLPS-Glm-0732 | Glycine max | 82.65 | 2e-43 | 144 |
| LLPS-Mua-1883 | Musa acuminata | 81.63 | 3e-43 | 144 |
| LLPS-Prp-1155 | Prunus persica | 81.63 | 2e-43 | 144 |
| LLPS-Gor-1073 | Gossypium raimondii | 81.63 | 5e-42 | 141 |
| LLPS-Via-2314 | Vigna angularis | 80.61 | 6e-43 | 143 |
| LLPS-Orgl-1448 | Oryza glumaepatula | 80.61 | 1e-41 | 140 |
| LLPS-Cus-0425 | Cucumis sativus | 80.61 | 5e-43 | 144 |
| LLPS-Orb-1965 | Oryza barthii | 80.61 | 1e-41 | 140 |
| LLPS-Thc-1096 | Theobroma cacao | 80.61 | 3e-41 | 139 |
| LLPS-Orni-1697 | Oryza nivara | 80.61 | 1e-41 | 140 |
| LLPS-Orr-2429 | Oryza rufipogon | 80.61 | 1e-41 | 140 |
| LLPS-Coc-1747 | Corchorus capsularis | 80.61 | 3e-41 | 139 |
| LLPS-Pot-2142 | Populus trichocarpa | 80.61 | 2e-41 | 139 |
| LLPS-Amt-1990 | Amborella trichopoda | 80.61 | 3e-42 | 142 |
| LLPS-Phv-2379 | Phaseolus vulgaris | 80.61 | 7e-43 | 143 |
| LLPS-Lep-0496 | Leersia perrieri | 79.59 | 6e-41 | 138 |
| LLPS-Sei-1145 | Setaria italica | 79.59 | 4e-41 | 139 |
| LLPS-Orm-1356 | Oryza meridionalis | 79.59 | 3e-41 | 139 |
| LLPS-Zem-2328 | Zea mays | 79.59 | 4e-41 | 139 |
| LLPS-Sob-1278 | Sorghum bicolor | 79.59 | 3e-41 | 139 |
| LLPS-Mae-1923 | Manihot esculenta | 79.59 | 2e-41 | 139 |
| LLPS-Hov-1841 | Hordeum vulgare | 78.57 | 4e-41 | 139 |
| LLPS-Brd-1671 | Brachypodium distachyon | 78.57 | 6e-41 | 139 |
| LLPS-Tra-1539 | Triticum aestivum | 78.57 | 4e-41 | 139 |
| LLPS-Ori-1769 | Oryza indica | 78.57 | 3e-41 | 139 |
| LLPS-Hea-2138 | Helianthus annuus | 78.57 | 2e-41 | 139 |
| LLPS-Dac-0617 | Daucus carota | 78.57 | 1e-41 | 140 |
| LLPS-Tru-0753 | Triticum urartu | 78.57 | 4e-41 | 139 |
| LLPS-Viv-1356 | Vitis vinifera | 78.57 | 7e-42 | 140 |
| LLPS-Ors-1093 | Oryza sativa | 78.57 | 3e-41 | 139 |
| LLPS-Sot-0299 | Solanum tuberosum | 77.55 | 9e-41 | 138 |
| LLPS-Sol-1805 | Solanum lycopersicum | 77.55 | 1e-40 | 138 |
| LLPS-Nia-2293 | Nicotiana attenuata | 77.55 | 6e-40 | 135 |
| LLPS-Arl-2814 | Arabidopsis lyrata | 76.53 | 2e-40 | 137 |
| LLPS-Brn-3164 | Brassica napus | 76.53 | 3e-40 | 136 |
| LLPS-Bro-2173 | Brassica oleracea | 76.53 | 4e-40 | 136 |
| LLPS-Art-2343 | Arabidopsis thaliana | 76.53 | 3e-40 | 137 |
| LLPS-Brr-2956 | Brassica rapa | 76.53 | 4e-40 | 136 |
| LLPS-Php-1519 | Physcomitrella patens | 74.49 | 2e-38 | 131 |
| LLPS-Osl-1353 | Ostreococcus lucimarinus | 62.5 | 2e-29 | 108 |
| LLPS-Chr-1252 | Chlamydomonas reinhardtii | 59.18 | 5e-29 | 107 |
| LLPS-Gaa-1833 | Gasterosteus aculeatus | 48.39 | 2e-16 | 75.5 |
| LLPS-Pof-2265 | Poecilia formosa | 47.31 | 1e-15 | 73.2 |
| LLPS-Scm-3223 | Scophthalmus maximus | 47.31 | 4e-16 | 74.7 |
| LLPS-Orn-3312 | Oreochromis niloticus | 47.31 | 2e-16 | 75.5 |
| LLPS-Xim-3780 | Xiphophorus maculatus | 46.24 | 9e-15 | 70.9 |
| LLPS-Tar-3595 | Takifugu rubripes | 46.24 | 2e-15 | 73.2 |
| LLPS-Orl-2537 | Oryzias latipes | 46.24 | 1e-16 | 76.3 |
| LLPS-Sus-2839 | Sus scrofa | 46.24 | 5e-13 | 66.2 |
| LLPS-Fud-0370 | Fukomys damarensis | 46.24 | 1e-13 | 67.8 |
| LLPS-Ten-1789 | Tetraodon nigroviridis | 46.24 | 9e-16 | 73.9 |
| LLPS-Cap-4295 | Cavia porcellus | 46.24 | 7e-14 | 68.6 |
| LLPS-Cas-2568 | Carlito syrichta | 46.24 | 4e-13 | 66.6 |
| LLPS-Lac-3804 | Latimeria chalumnae | 46.24 | 1e-13 | 68.2 |
| LLPS-Dio-3864 | Dipodomys ordii | 46.0 | 4e-08 | 51.6 |
| LLPS-Bot-3983 | Bos taurus | 45.16 | 1e-12 | 65.5 |
| LLPS-Aim-4025 | Ailuropoda melanoleuca | 45.16 | 1e-12 | 65.1 |
| LLPS-Eqc-3767 | Equus caballus | 45.16 | 1e-12 | 65.1 |
| LLPS-Fec-2936 | Felis catus | 45.16 | 2e-12 | 64.7 |
| LLPS-Otg-4575 | Otolemur garnettii | 45.16 | 3e-13 | 66.6 |
| LLPS-Drm-1868 | Drosophila melanogaster | 44.79 | 1e-13 | 68.2 |
| LLPS-Scf-2042 | Scleropages formosus | 44.09 | 1e-14 | 70.5 |
| LLPS-Ran-4159 | Rattus norvegicus | 44.09 | 3e-11 | 61.2 |
| LLPS-Ova-1715 | Ovis aries | 44.09 | 2e-12 | 64.3 |
| LLPS-Mea-1585 | Mesocricetus auratus | 44.09 | 1e-11 | 62.4 |
| LLPS-Mum-4051 | Mus musculus | 44.09 | 6e-12 | 63.2 |
| LLPS-Aon-0999 | Aotus nancymaae | 44.09 | 2e-12 | 64.3 |
| LLPS-Icp-0396 | Ictalurus punctatus | 44.09 | 2e-14 | 70.1 |
| LLPS-Caj-1426 | Callithrix jacchus | 44.09 | 2e-12 | 64.3 |
| LLPS-Caf-4644 | Canis familiaris | 44.09 | 4e-12 | 63.5 |
| LLPS-Loa-4425 | Loxodonta africana | 44.09 | 3e-12 | 64.3 |
| LLPS-Rhb-4654 | Rhinopithecus bieti | 44.09 | 1e-12 | 65.5 |
| LLPS-Nol-4345 | Nomascus leucogenys | 44.0 | 3e-07 | 48.9 |
| LLPS-Anc-2614 | Anolis carolinensis | 43.75 | 1e-11 | 62.0 |
| LLPS-Tut-0915 | Tursiops truncatus | 43.02 | 2e-10 | 58.9 |
| LLPS-Paa-1736 | Papio anubis | 43.01 | 6e-12 | 63.2 |
| LLPS-Myl-2291 | Myotis lucifugus | 43.01 | 3e-12 | 64.3 |
| LLPS-Maf-1343 | Macaca fascicularis | 43.01 | 6e-12 | 63.2 |
| LLPS-Chs-0424 | Chlorocebus sabaeus | 43.01 | 6e-12 | 63.2 |
| LLPS-Cea-3711 | Cercocebus atys | 43.01 | 6e-12 | 63.2 |
| LLPS-Gaga-2991 | Gallus gallus | 43.01 | 6e-14 | 68.9 |
| LLPS-Xet-0401 | Xenopus tropicalis | 43.01 | 1e-12 | 65.1 |
| LLPS-Dar-3000 | Danio rerio | 43.01 | 1e-12 | 65.1 |
| LLPS-Mod-1489 | Monodelphis domestica | 43.01 | 3e-12 | 64.3 |
| LLPS-Asm-2077 | Astyanax mexicanus | 42.39 | 6e-15 | 71.2 |
| LLPS-Anp-2351 | Anas platyrhynchos | 41.94 | 4e-13 | 66.2 |
| LLPS-Fia-2079 | Ficedula albicollis | 41.94 | 7e-13 | 65.9 |
| LLPS-Mal-3010 | Mandrillus leucophaeus | 41.86 | 6e-10 | 57.4 |
| LLPS-Pes-0903 | Pelodiscus sinensis | 41.86 | 4e-10 | 58.2 |
| LLPS-Man-2300 | Macaca nemestrina | 41.11 | 3e-10 | 58.5 |
| LLPS-Meg-0106 | Meleagris gallopavo | 40.86 | 6e-12 | 63.2 |