LLPS-Ors-1093
Os01g0734100
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | 50S ribosomal protein L20 |
| Gene Name: | Os01g0734100, B1060H01.12, OsJ_03363, OSJNBb0036G09.23, OSNPB_010734100 |
| Ensembl Gene: | Os01g0734100 |
| Ensembl Protein: | Os01t0734100-01 |
| Organism: | Oryza sativa |
| Taxa ID: | 39947 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nucleolus | Predicted from orthologs | (View) |
▼ FUNCTION
| Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | Os01t0734100-01 | Os01t0734100-01 |
| UniProt | Q942D0, Q942D0_ORYSJ | |
| GeneBank | CM000138, AP003309, AK064618, AP008207, AP003560, AP014957 | BAG89130.1, BAB89939.1, BAS74210.1, BAF06078.1, EEE55345.1, BAB68076.1 |
| RefSeq | XM_015770706.1 | XP_015626192.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MNKGKIFKLA KGFRGRAKNC IRIARERVEK ALQYSYRDRH NKKRDMRSLW IERINAGTRL 60 61 HGVNYGNFMH GLMKENIQLN RKVLSELSMH EPYSFKALVD VSRSAFPGNR PPVKKEGLAA 120 121 IL 122 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGAACAAGG GCAAGATTTT CAAGTTGGCA AAGGGATTTA GAGGCAGGGC GAAAAATTGC 60 61 ATAAGGATAG CAAGGGAGAG GGTTGAGAAA GCCTTGCAAT ATTCCTACAG GGATAGACAT 120 121 AACAAGAAGA GGGATATGCG ATCCCTTTGG ATAGAGCGTA TCAATGCTGG TACACGATTG 180 181 CATGGGGTGA ACTATGGAAA TTTCATGCAT GGATTGATGA AGGAGAACAT CCAGCTCAAC 240 241 CGGAAGGTGC TCTCAGAGCT TTCTATGCAT GAGCCCTACA GCTTCAAGGC ACTTGTTGAT 300 301 GTATCCCGCA GTGCATTTCC AGGGAACAGG CCGCCTGTTA AAAAGGAGGG TCTAGCAGCC 360 361 ATCCTGTGA 369 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Ribosome | |
Molecular Function | RRNA binding | |
Molecular Function | Structural constituent of ribosome | |
Biological Process | Ribosomal large subunit assembly | |
Biological Process | Translation |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Ori-1769 | Oryza indica | 100.0 | 3e-85 | 251 |
| LLPS-Orm-1356 | Oryza meridionalis | 99.18 | 4e-84 | 248 |
| LLPS-Lep-0496 | Leersia perrieri | 96.72 | 2e-80 | 239 |
| LLPS-Orr-2429 | Oryza rufipogon | 95.9 | 3e-80 | 238 |
| LLPS-Sob-1278 | Sorghum bicolor | 95.9 | 5e-80 | 238 |
| LLPS-Orgl-1448 | Oryza glumaepatula | 95.9 | 3e-80 | 238 |
| LLPS-Orni-1697 | Oryza nivara | 95.9 | 3e-80 | 238 |
| LLPS-Orb-1965 | Oryza barthii | 95.9 | 3e-80 | 238 |
| LLPS-Tru-0753 | Triticum urartu | 95.08 | 2e-81 | 242 |
| LLPS-Zem-2328 | Zea mays | 95.08 | 1e-79 | 237 |
| LLPS-Tra-1539 | Triticum aestivum | 95.08 | 2e-81 | 242 |
| LLPS-Brd-1671 | Brachypodium distachyon | 95.08 | 1e-79 | 237 |
| LLPS-Hov-1841 | Hordeum vulgare | 95.08 | 2e-81 | 242 |
| LLPS-Sei-1145 | Setaria italica | 95.08 | 1e-79 | 237 |
| LLPS-Mua-1883 | Musa acuminata | 92.11 | 3e-72 | 218 |
| LLPS-Via-2314 | Vigna angularis | 89.83 | 9e-72 | 217 |
| LLPS-Gor-1073 | Gossypium raimondii | 89.38 | 8e-70 | 212 |
| LLPS-Phv-2379 | Phaseolus vulgaris | 88.98 | 2e-71 | 216 |
| LLPS-Glm-0732 | Glycine max | 88.14 | 3e-71 | 216 |
| LLPS-Amt-1990 | Amborella trichopoda | 88.0 | 6e-74 | 223 |
| LLPS-Sot-0299 | Solanum tuberosum | 88.0 | 6e-75 | 225 |
| LLPS-Sol-1805 | Solanum lycopersicum | 88.0 | 4e-75 | 226 |
| LLPS-Bro-2173 | Brassica oleracea | 87.72 | 1e-68 | 209 |
| LLPS-Brr-2956 | Brassica rapa | 87.72 | 1e-68 | 209 |
| LLPS-Art-2343 | Arabidopsis thaliana | 87.72 | 8e-69 | 209 |
| LLPS-Arl-2814 | Arabidopsis lyrata | 87.72 | 1e-68 | 209 |
| LLPS-Brn-3164 | Brassica napus | 87.72 | 1e-68 | 209 |
| LLPS-Mae-1923 | Manihot esculenta | 87.29 | 1e-69 | 211 |
| LLPS-Met-1525 | Medicago truncatula | 87.29 | 8e-71 | 214 |
| LLPS-Dac-0617 | Daucus carota | 87.2 | 9e-74 | 222 |
| LLPS-Prp-1155 | Prunus persica | 86.4 | 1e-73 | 222 |
| LLPS-Hea-2138 | Helianthus annuus | 86.4 | 5e-73 | 220 |
| LLPS-Coc-1747 | Corchorus capsularis | 86.18 | 2e-70 | 214 |
| LLPS-Thc-1096 | Theobroma cacao | 86.07 | 8e-71 | 214 |
| LLPS-Nia-2293 | Nicotiana attenuata | 84.8 | 5e-72 | 218 |
| LLPS-Cus-0425 | Cucumis sativus | 84.8 | 2e-72 | 219 |
| LLPS-Pot-2142 | Populus trichocarpa | 83.87 | 9e-71 | 214 |
| LLPS-Viv-1356 | Vitis vinifera | 83.2 | 1e-71 | 217 |
| LLPS-Php-1519 | Physcomitrella patens | 81.31 | 2e-59 | 185 |
| LLPS-Sem-2259 | Selaginella moellendorffii | 77.45 | 5e-53 | 169 |
| LLPS-Osl-1353 | Ostreococcus lucimarinus | 67.35 | 1e-42 | 142 |
| LLPS-Chr-1252 | Chlamydomonas reinhardtii | 60.19 | 9e-37 | 127 |
| LLPS-Drm-1868 | Drosophila melanogaster | 45.54 | 3e-21 | 88.6 |
| LLPS-Orn-3312 | Oreochromis niloticus | 45.0 | 2e-23 | 94.4 |
| LLPS-Orl-2537 | Oryzias latipes | 44.44 | 4e-24 | 95.9 |
| LLPS-Gaa-1833 | Gasterosteus aculeatus | 44.0 | 4e-22 | 90.9 |
| LLPS-Lac-3804 | Latimeria chalumnae | 43.43 | 1e-21 | 89.4 |
| LLPS-Ten-1789 | Tetraodon nigroviridis | 43.0 | 1e-22 | 92.0 |
| LLPS-Scm-3223 | Scophthalmus maximus | 43.0 | 1e-22 | 92.4 |
| LLPS-Anc-2614 | Anolis carolinensis | 42.57 | 6e-20 | 85.1 |
| LLPS-Bot-3983 | Bos taurus | 42.42 | 3e-20 | 86.7 |
| LLPS-Aon-0999 | Aotus nancymaae | 42.37 | 8e-21 | 87.4 |
| LLPS-Pof-2265 | Poecilia formosa | 42.0 | 5e-21 | 87.8 |
| LLPS-Scf-2042 | Scleropages formosus | 42.0 | 1e-21 | 89.7 |
| LLPS-Xet-0401 | Xenopus tropicalis | 41.41 | 2e-20 | 86.7 |
| LLPS-Ova-1715 | Ovis aries | 41.41 | 2e-20 | 86.3 |
| LLPS-Tar-3595 | Takifugu rubripes | 41.0 | 4e-21 | 87.8 |
| LLPS-Xim-3780 | Xiphophorus maculatus | 41.0 | 4e-20 | 85.5 |
| LLPS-Cas-2568 | Carlito syrichta | 40.68 | 3e-21 | 88.6 |
| LLPS-Cap-4295 | Cavia porcellus | 40.68 | 2e-21 | 89.0 |
| LLPS-Caj-1426 | Callithrix jacchus | 40.68 | 5e-20 | 85.1 |
| LLPS-Fud-0370 | Fukomys damarensis | 40.68 | 5e-21 | 87.8 |
| LLPS-Caf-4644 | Canis familiaris | 40.4 | 3e-20 | 85.9 |
| LLPS-Mal-3010 | Mandrillus leucophaeus | 40.0 | 2e-18 | 80.1 |
| LLPS-Rhb-4654 | Rhinopithecus bieti | 39.83 | 4e-20 | 85.5 |
| LLPS-Dar-3000 | Danio rerio | 39.83 | 2e-20 | 86.3 |
| LLPS-Icp-0396 | Ictalurus punctatus | 39.83 | 8e-23 | 92.4 |
| LLPS-Fia-2079 | Ficedula albicollis | 39.8 | 5e-20 | 85.5 |
| LLPS-Man-2300 | Macaca nemestrina | 39.47 | 2e-18 | 82.0 |
| LLPS-Gaga-2991 | Gallus gallus | 39.39 | 2e-20 | 86.3 |
| LLPS-Otg-4575 | Otolemur garnettii | 39.32 | 1e-20 | 87.0 |
| LLPS-Loa-4425 | Loxodonta africana | 38.98 | 1e-20 | 86.7 |
| LLPS-Paa-1736 | Papio anubis | 38.98 | 3e-19 | 83.2 |
| LLPS-Sus-2839 | Sus scrofa | 38.98 | 8e-21 | 87.4 |
| LLPS-Cea-3711 | Cercocebus atys | 38.98 | 3e-19 | 83.2 |
| LLPS-Chs-0424 | Chlorocebus sabaeus | 38.98 | 3e-19 | 83.2 |
| LLPS-Maf-1343 | Macaca fascicularis | 38.98 | 3e-19 | 83.2 |
| LLPS-Nol-4345 | Nomascus leucogenys | 38.96 | 2e-09 | 55.5 |
| LLPS-Meg-0106 | Meleagris gallopavo | 38.83 | 1e-18 | 81.6 |
| LLPS-Tut-0915 | Tursiops truncatus | 38.18 | 9e-20 | 84.0 |
| LLPS-Eqc-3767 | Equus caballus | 38.14 | 1e-20 | 86.7 |
| LLPS-Fec-2936 | Felis catus | 38.14 | 1e-20 | 86.7 |
| LLPS-Aim-4025 | Ailuropoda melanoleuca | 38.14 | 8e-21 | 87.4 |
| LLPS-Ran-4159 | Rattus norvegicus | 38.14 | 2e-19 | 83.6 |
| LLPS-Mum-4051 | Mus musculus | 38.14 | 4e-20 | 85.5 |
| LLPS-Dio-3864 | Dipodomys ordii | 37.84 | 1e-10 | 58.5 |
| LLPS-Asm-2077 | Astyanax mexicanus | 37.7 | 1e-22 | 92.0 |
| LLPS-Mea-1585 | Mesocricetus auratus | 37.61 | 3e-19 | 83.2 |
| LLPS-Pes-0903 | Pelodiscus sinensis | 37.5 | 2e-14 | 69.7 |
| LLPS-Anp-2351 | Anas platyrhynchos | 37.29 | 9e-20 | 84.7 |
| LLPS-Mod-1489 | Monodelphis domestica | 36.75 | 4e-19 | 82.8 |
| LLPS-Myl-2291 | Myotis lucifugus | 36.44 | 3e-18 | 80.5 |
| LLPS-Mam-3831 | Macaca mulatta | 36.0 | 5e-09 | 54.7 |
| LLPS-Hos-2028 | Homo sapiens | 36.0 | 3e-09 | 55.5 |
| LLPS-Pat-1775 | Pan troglodytes | 36.0 | 6e-09 | 54.7 |
| LLPS-Pap-0717 | Pan paniscus | 36.0 | 7e-09 | 54.7 |
| LLPS-Gog-4572 | Gorilla gorilla | 36.0 | 3e-09 | 55.5 |
| LLPS-Urm-2763 | Ursus maritimus | 34.07 | 7e-12 | 62.8 |
| LLPS-Sah-3643 | Sarcophilus harrisii | 32.2 | 3e-10 | 58.5 |