LLPS-Scm-2815
SMAX5B_001379
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | RNA binding protein fox-1 homolog |
| Gene Name: | SMAX5B_001379 |
| Ensembl Gene: | ENSSMAG00000015505.1 |
| Ensembl Protein: | ENSSMAP00000025345.1 |
| Organism: | Scophthalmus maximus |
| Taxa ID: | 52904 |
| LLPS Type: | Scaffold |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Droplet, Stress granule | Predicted from orthologs | (View) |
▼ FUNCTION
| RNA-binding protein that regulates alternative splicing events. |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | ENSSMAT00000025647.1 | ENSSMAP00000025345.1 |
| Ensembl | ENSSMAT00000025674.1 | ENSSMAP00000025369.1 |
| Ensembl | ENSSMAT00000025702.1 | ENSSMAP00000025393.1 |
| Ensembl | ENSSMAT00000025758.1 | ENSSMAP00000025448.1 |
| Ensembl | ENSSMAT00000025627.1 | ENSSMAP00000025325.1 |
| UniProt | A0A2U9CQW3, A0A2U9CQW3_SCOMX | |
| GeneBank | CP026261 | AWP18320.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MQHPGGTCVA LPNVDACPQL SCAALTFMYL QQGNQDAPAP PDPSMAQAYS SAQFAPAPQN 60 61 GIPAEFTASH PHPHPHSHPH QHPAAPQDYT GVQASVSEHP LNMYQSSQSH SEQGGSDSSS 120 121 QTVTGTATQT DDAALTDSHP PTQTVPESTD SKAQPKRLHV SNIPFRFRDP DLRQMFGQFG 180 181 KILDVEIIFN ERGSKGFGFV TFEHSMDADR AREKLHGTVV EGRKIEVNNA TARVMTNKKT 240 241 VNPYANGWKL NPVVSAVYSP EFYAVPGFPY PAASAAAAAY RGAHLRGRGR TVYNTFRAAA 300 301 PPPHIPAYGG VVYQDGFYGA DIYGGYAAYR YTQPTAATAA AYSDSYGRVY AADPYNHTLT 360 361 PAATYSVGAM NTFAPLTDAK TRSHADDVGL VLSSLQASIY RGGYSRFAPY 410 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGCAGCATC CTGGAGGAAC ATGCGTGGCG TTACCAAATG TGGACGCGTG TCCCCAGCTA 60 61 TCCTGTGCCG CCCTCACCTT CATGTATTTA CAGCAGGGTA ACCAAGACGC ACCGGCACCC 120 121 CCGGACCCAT CCATGGCCCA GGCTTACTCA TCAGCCCAGT TTGCCCCCGC TCCCCAGAAC 180 181 GGCATCCCTG CTGAGTTTAC AGCTTCACAC CCCCACCCAC ATCCACACTC CCATCCACAC 240 241 CAGCACCCGG CAGCACCACA GGACTACACT GGGGTCCAGG CCTCCGTCAG TGAGCATCCA 300 301 CTCAACATGT ACCAGTCCTC ACAGAGCCAC AGTGAGCAGG GAGGGTCAGA CTCCAGCAGT 360 361 CAGACGGTCA CCGGCACTGC CACACAGACG GATGATGCTG CTCTGACCGA CAGTCATCCA 420 421 CCAACACAGA CTGTCCCTGA AAGCACAGAC AGCAAGGCCC AACCCAAGAG ACTTCATGTC 480 481 TCCAACATTC CCTTCAGGTT CAGAGACCCA GACCTCAGGC AAATGTTCGG CCAATTCGGT 540 541 AAAATCTTGG ATGTGGAAAT CATCTTCAAT GAGCGTGGTT CCAAGGGTTT TGGATTTGTA 600 601 ACGTTCGAGC ATAGCATGGA CGCCGACAGG GCCAGAGAGA AATTACACGG CACCGTGGTA 660 661 GAAGGTCGTA AAATAGAGGT CAACAATGCA ACAGCCCGAG TAATGACAAA TAAGAAGACA 720 721 GTCAACCCAT ATGCAAATGG CTGGAAGTTA AATCCAGTGG TCAGCGCTGT CTACAGCCCA 780 781 GAATTCTATG CAGTACCAGG TTTTCCCTAC CCAGCAGCAA GTGCAGCAGC AGCAGCATAC 840 841 AGAGGAGCCC ACTTACGGGG TCGGGGCCGG ACTGTATACA ACACGTTCAG GGCAGCTGCT 900 901 CCGCCTCCCC ACATCCCAGC TTATGGAGGT GTTGTTTACC AGGATGGATT TTATGGTGCA 960 961 GATATTTATG GTGGTTATGC TGCCTACAGA TATACCCAGC CTACTGCTGC CACAGCTGCT 1020 1021 GCATACAGTG ACAGTTACGG ACGAGTATAT GCTGCCGACC CCTACAACCA CACACTCACT 1080 1081 CCAGCAGCCA CATACAGCGT TGGTGCCATG CTCTTGGCAT GTGTCCCTGG CATGAAGCGT 1140 1141 CTCGCTGTGC TTGCTGCATG A 1161 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Nucleus | |
Molecular Function | RNA binding | |
Biological Process | MRNA processing | |
Biological Process | Regulation of RNA splicing | |
Biological Process | RNA splicing |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Scf-1703 | Scleropages formosus | 92.65 | 5e-32 | 129 |
| LLPS-Tar-1018 | Takifugu rubripes | 91.86 | 1e-172 | 495 |
| LLPS-Orc-3599 | Oryctolagus cuniculus | 90.68 | 2e-68 | 227 |
| LLPS-Myl-3759 | Myotis lucifugus | 86.0 | 6e-22 | 95.5 |
| LLPS-Pes-3330 | Pelodiscus sinensis | 85.29 | 1e-09 | 64.7 |
| LLPS-Dar-0980 | Danio rerio | 83.2 | 2e-145 | 426 |
| LLPS-Mam-0988 | Macaca mulatta | 82.84 | 2e-73 | 240 |
| LLPS-Pap-0649 | Pan paniscus | 82.84 | 2e-73 | 240 |
| LLPS-Asm-3896 | Astyanax mexicanus | 82.4 | 1e-91 | 288 |
| LLPS-Loa-2123 | Loxodonta africana | 79.8 | 2e-120 | 359 |
| LLPS-Urm-3899 | Ursus maritimus | 79.45 | 7e-12 | 68.6 |
| LLPS-Bot-3728 | Bos taurus | 78.49 | 7e-80 | 257 |
| LLPS-Caf-1903 | Canis familiaris | 78.32 | 2e-91 | 285 |
| LLPS-Tag-3364 | Taeniopygia guttata | 76.85 | 2e-140 | 413 |
| LLPS-Sah-4060 | Sarcophilus harrisii | 76.79 | 2e-137 | 406 |
| LLPS-Anp-0972 | Anas platyrhynchos | 76.34 | 2e-141 | 416 |
| LLPS-Nol-3417 | Nomascus leucogenys | 76.15 | 1e-55 | 191 |
| LLPS-Leo-2342 | Lepisosteus oculatus | 76.14 | 2e-140 | 414 |
| LLPS-Otg-4680 | Otolemur garnettii | 76.11 | 2e-135 | 401 |
| LLPS-Eqc-4000 | Equus caballus | 75.0 | 5e-153 | 447 |
| LLPS-Mod-0355 | Monodelphis domestica | 73.0 | 2e-90 | 284 |
| LLPS-Cap-4455 | Cavia porcellus | 72.81 | 7e-134 | 398 |
| LLPS-Aim-0985 | Ailuropoda melanoleuca | 72.69 | 8e-90 | 279 |
| LLPS-Fud-1323 | Fukomys damarensis | 72.58 | 1e-133 | 397 |
| LLPS-Ict-4554 | Ictidomys tridecemlineatus | 72.58 | 6e-133 | 395 |
| LLPS-Tut-0015 | Tursiops truncatus | 72.34 | 7e-134 | 398 |
| LLPS-Cas-2920 | Carlito syrichta | 72.12 | 4e-92 | 290 |
| LLPS-Rhb-0494 | Rhinopithecus bieti | 72.12 | 2e-92 | 291 |
| LLPS-Chs-4273 | Chlorocebus sabaeus | 72.06 | 1e-94 | 295 |
| LLPS-Anc-1625 | Anolis carolinensis | 71.88 | 5e-131 | 390 |
| LLPS-Gaga-0477 | Gallus gallus | 71.87 | 5e-135 | 401 |
| LLPS-Fia-2567 | Ficedula albicollis | 71.79 | 6e-97 | 300 |
| LLPS-Icp-3902 | Ictalurus punctatus | 71.67 | 2e-133 | 395 |
| LLPS-Meg-0224 | Meleagris gallopavo | 71.33 | 2e-95 | 295 |
| LLPS-Dio-1184 | Dipodomys ordii | 71.29 | 2e-77 | 251 |
| LLPS-Aon-2750 | Aotus nancymaae | 71.29 | 1e-77 | 249 |
| LLPS-Ran-3727 | Rattus norvegicus | 70.85 | 1e-134 | 399 |
| LLPS-Mup-1397 | Mustela putorius furo | 70.21 | 2e-94 | 296 |
| LLPS-Poa-3525 | Pongo abelii | 69.91 | 2e-93 | 293 |
| LLPS-Sus-3601 | Sus scrofa | 69.85 | 1e-90 | 288 |
| LLPS-Mum-4742 | Mus musculus | 69.03 | 4e-132 | 393 |
| LLPS-Ora-1277 | Ornithorhynchus anatinus | 68.57 | 2e-94 | 295 |
| LLPS-Caj-0033 | Callithrix jacchus | 68.14 | 9e-92 | 294 |
| LLPS-Mal-1269 | Mandrillus leucophaeus | 67.85 | 7e-93 | 293 |
| LLPS-Paa-0841 | Papio anubis | 67.85 | 3e-92 | 296 |
| LLPS-Gog-3482 | Gorilla gorilla | 67.85 | 3e-92 | 295 |
| LLPS-Cea-3459 | Cercocebus atys | 67.85 | 3e-92 | 296 |
| LLPS-Fec-0511 | Felis catus | 67.85 | 6e-93 | 298 |
| LLPS-Pat-1058 | Pan troglodytes | 67.85 | 4e-92 | 295 |
| LLPS-Hos-0644 | Homo sapiens | 67.85 | 5e-92 | 295 |
| LLPS-Maf-3015 | Macaca fascicularis | 67.55 | 4e-92 | 295 |
| LLPS-Man-3685 | Macaca nemestrina | 67.55 | 4e-92 | 295 |
| LLPS-Ten-1963 | Tetraodon nigroviridis | 66.19 | 3e-74 | 239 |
| LLPS-Cae-2013 | Caenorhabditis elegans | 64.29 | 2e-29 | 122 |
| LLPS-Pof-1427 | Poecilia formosa | 63.86 | 4e-83 | 268 |
| LLPS-Xim-0110 | Xiphophorus maculatus | 62.37 | 6e-84 | 271 |
| LLPS-Orn-2894 | Oreochromis niloticus | 61.76 | 1e-94 | 295 |
| LLPS-Ova-2375 | Ovis aries | 60.92 | 1e-66 | 218 |
| LLPS-Orl-2845 | Oryzias latipes | 59.79 | 2e-80 | 261 |
| LLPS-Xet-2608 | Xenopus tropicalis | 57.5 | 4e-80 | 259 |
| LLPS-Gaa-1024 | Gasterosteus aculeatus | 53.09 | 4e-71 | 235 |
| LLPS-Lac-0757 | Latimeria chalumnae | 52.47 | 3e-78 | 253 |
| LLPS-Mea-0106 | Mesocricetus auratus | 52.02 | 1e-90 | 285 |
| LLPS-Tra-1142 | Triticum aestivum | 41.25 | 1e-08 | 58.2 |
| LLPS-Lep-1092 | Leersia perrieri | 40.51 | 9e-09 | 61.6 |
| LLPS-Dac-1385 | Daucus carota | 40.45 | 8e-10 | 62.8 |
| LLPS-Brd-0209 | Brachypodium distachyon | 39.24 | 8e-09 | 60.5 |
| LLPS-Prp-2015 | Prunus persica | 39.24 | 2e-09 | 62.8 |
| LLPS-Mae-2025 | Manihot esculenta | 39.02 | 1e-08 | 60.1 |
| LLPS-Php-0237 | Physcomitrella patens | 38.46 | 1e-08 | 60.1 |
| LLPS-Sob-1001 | Sorghum bicolor | 37.8 | 3e-07 | 55.8 |
| LLPS-Sot-0829 | Solanum tuberosum | 37.65 | 8e-09 | 60.1 |
| LLPS-Drm-0962 | Drosophila melanogaster | 37.23 | 6e-09 | 62.0 |
| LLPS-Mua-1109 | Musa acuminata | 35.79 | 7e-09 | 60.8 |
| LLPS-Amt-1984 | Amborella trichopoda | 32.32 | 1e-09 | 62.8 |
| LLPS-Brn-2617 | Brassica napus | 32.14 | 1e-08 | 60.1 |
| LLPS-Art-0527 | Arabidopsis thaliana | 32.14 | 2e-08 | 60.1 |
| LLPS-Brr-2828 | Brassica rapa | 32.14 | 1e-08 | 60.1 |