LLPS-Ors-1676
OSJNBb0058B20.19
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | Transcription initiation factor IIE subunit beta |
| Gene Name: | OSJNBb0058B20.19, LOC_Os10g25770, Os10g0397200, OsJ_31427, OSNPB_100397200 |
| Ensembl Gene: | Os10g0397200 |
| Ensembl Protein: | Os10t0397200-02 |
| Organism: | Oryza sativa |
| Taxa ID: | 39947 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nucleolus | Predicted from orthologs | (View) |
▼ FUNCTION
| Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | Os10t0397200-02 | Os10t0397200-02 |
| Ensembl | Os10t0397200-01 | Os10t0397200-01 |
| UniProt | Q8RU47, Q8RU47_ORYSJ | |
| GeneBank | DP000086, AP014966, CM000147, AC108884, AP008216 | BAF26447.1, AAM01137.1, AAP53614.1, EAZ15982.1, BAT10715.1, ABB47522.1 |
| RefSeq | XM_015759170.1, XM_015759171.1 | XP_015614656.1, XP_015614657.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MDLKDSLSKF KQQQERCQSS LASIAASTSK PKHRAQPVNA PSAPARPLQP IKFSNDTERL 60 61 QHINSVRKSP IGAQIKLVIE LLYKTRQAFT AEQINETTYV DIHGNKSVFD SLRNNPKVHY 120 121 DGRRFSYKSK HDLKGKDQLL VLVRKYPEGL AVVEVKDAYP TVMEDLQALK AAGEVWLLSN 180 181 MDSQEDIVYP NDPKAKIKVD DDLKQLFREM ELPRDMVDIE KELQKNGIKP MTNTAKRRAA 240 241 AQINGVQPKA KPKKKQREIT RRTKLTNAHL PELFQNLNT 279 |
| Nucleotide CDS Sequence (FASTA) |
1 AAGCACAGGG CCCAACCGGT TAATGCTCCA TCCGCTCCAG CAAGGCCACT ACAACCTATT 60 61 AAGTTTTCAA ATGATACAGA AAGGCTACAA CACATCAATT CAGTTAGGAA ATCTCCTATT 120 121 GGAGCACAGA TCAAACTTGT CATTGAATTG CTGTACAAGA CAAGACAAGC TTTTACTGCG 180 181 GAGCAAATAA ATGAAACAAC TTATGTTGAT ATCCATGGGA ATAAGTCTGT CTTTGACAGT 240 241 CTGAGGAACA ATCCTAAAGT ACATTATGAT GGGAGACGTT TCTCTTACAA GTCCAAGCAT 300 301 GATTTGAAGG GAAAAGATCA ACTACTTGTT TTGGTAAGAA AGTATCCGGA GGGTCTTGCT 360 361 GTGGTGGAAG TCAAGGATGC GTACCCAACT GTAATGGAAG ATTTGCAGGC ACTGAAGGCA 420 421 GCAGGTGAAG TTTGGCTGTT ATCGAACATG GATTCCCAGG AGGACATTGT GTATCCTAAC 480 481 GACCCAAAGG CAAAGATCAA GGTCGACGAT GACCTGAAGC AGCTCTTCCG GGAGATGGAG 540 541 TTACCGCGGG ACATGGTGGA TATCGAGAAG GAGCTCCAGA AGAATGGCAT CAAGCCCATG 600 601 ACCAACACAG CTAAACGGCG GGCTGCAGCA CAGATCAATG GGGTGCAGCC CAAGGCTAAG 660 661 CCTAAGAAGA AGCAGCGTGA GATCACACGC CGGACCAAGC TCACGAACGC CCATCTGCCT 720 721 GAGCTGTTCC AGAACCTCAA CACTTGA 747 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Transcription factor TFIIE complex | |
Molecular Function | DNA binding | |
Molecular Function | Translation initiation factor activity | |
Biological Process | Transcription initiation from RNA polymerase II promoter |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Orr-0074 | Oryza rufipogon | 100.0 | 0.0 | 574 |
| LLPS-Ori-2064 | Oryza indica | 99.64 | 0.0 | 571 |
| LLPS-Orb-2086 | Oryza barthii | 99.64 | 0.0 | 570 |
| LLPS-Orni-0168 | Oryza nivara | 99.64 | 0.0 | 570 |
| LLPS-Orp-1367 | Oryza punctata | 99.64 | 0.0 | 571 |
| LLPS-Orm-0992 | Oryza meridionalis | 99.64 | 0.0 | 571 |
| LLPS-Org-1462 | Oryza glaberrima | 99.64 | 0.0 | 571 |
| LLPS-Orgl-0215 | Oryza glumaepatula | 99.27 | 0.0 | 557 |
| LLPS-Orbr-0303 | Oryza brachyantha | 96.4 | 0.0 | 532 |
| LLPS-Lep-0154 | Leersia perrieri | 94.98 | 0.0 | 525 |
| LLPS-Sei-2279 | Setaria italica | 93.19 | 2e-179 | 503 |
| LLPS-Zem-0946 | Zea mays | 93.19 | 0.0 | 524 |
| LLPS-Sob-0462 | Sorghum bicolor | 91.76 | 4e-177 | 499 |
| LLPS-Tra-0261 | Triticum aestivum | 86.88 | 4e-174 | 489 |
| LLPS-Hov-1439 | Hordeum vulgare | 86.88 | 5e-174 | 489 |
| LLPS-Tru-1027 | Triticum urartu | 86.88 | 6e-173 | 488 |
| LLPS-Cus-0779 | Cucumis sativus | 73.02 | 2e-139 | 401 |
| LLPS-Via-1615 | Vigna angularis | 70.97 | 5e-137 | 395 |
| LLPS-Glm-1853 | Glycine max | 68.93 | 2e-126 | 368 |
| LLPS-Mae-0700 | Manihot esculenta | 68.42 | 7e-134 | 387 |
| LLPS-Met-1434 | Medicago truncatula | 67.26 | 6e-134 | 387 |
| LLPS-Brr-2026 | Brassica rapa | 67.14 | 9e-133 | 385 |
| LLPS-Gor-0854 | Gossypium raimondii | 66.07 | 5e-134 | 388 |
| LLPS-Thc-1170 | Theobroma cacao | 65.84 | 1e-137 | 397 |
| LLPS-Hea-0252 | Helianthus annuus | 64.79 | 1e-126 | 371 |
| LLPS-Coc-0773 | Corchorus capsularis | 64.54 | 8e-135 | 390 |
| LLPS-Brn-0364 | Brassica napus | 61.48 | 5e-119 | 350 |
| LLPS-Bro-1845 | Brassica oleracea | 60.7 | 2e-115 | 340 |
| LLPS-Scp-0240 | Schizosaccharomyces pombe | 30.1 | 2e-18 | 86.7 |
| LLPS-Scc-0771 | Schizosaccharomyces cryophilus | 29.61 | 4e-11 | 65.9 |
| LLPS-Orn-0029 | Oreochromis niloticus | 29.17 | 6e-12 | 68.6 |
| LLPS-Dar-3760 | Danio rerio | 29.11 | 2e-08 | 58.5 |
| LLPS-Aso-1000 | Aspergillus oryzae | 28.95 | 2e-09 | 60.8 |
| LLPS-Asf-1191 | Aspergillus flavus | 28.95 | 2e-09 | 60.8 |
| LLPS-Cym-0021 | Cyanidioschyzon merolae | 28.84 | 9e-17 | 81.3 |
| LLPS-Gaa-2767 | Gasterosteus aculeatus | 28.79 | 2e-11 | 67.0 |
| LLPS-Scf-0661 | Scleropages formosus | 28.69 | 5e-13 | 71.2 |
| LLPS-Pof-0462 | Poecilia formosa | 28.65 | 1e-11 | 67.4 |
| LLPS-Tag-2117 | Taeniopygia guttata | 28.57 | 8e-13 | 70.9 |
| LLPS-Asm-2675 | Astyanax mexicanus | 28.5 | 9e-08 | 56.2 |
| LLPS-Asn-0580 | Aspergillus nidulans | 28.4 | 8e-10 | 62.4 |
| LLPS-Ten-0478 | Tetraodon nigroviridis | 28.24 | 2e-09 | 61.2 |
| LLPS-Tar-1669 | Takifugu rubripes | 28.12 | 1e-10 | 64.3 |
| LLPS-Xim-1488 | Xiphophorus maculatus | 28.12 | 7e-11 | 65.1 |
| LLPS-Scm-0499 | Scophthalmus maximus | 28.12 | 7e-09 | 59.7 |
| LLPS-Icp-1163 | Ictalurus punctatus | 28.06 | 4e-10 | 63.2 |
| LLPS-Loa-1846 | Loxodonta africana | 28.06 | 4e-12 | 68.9 |
| LLPS-Gaga-1233 | Gallus gallus | 27.69 | 5e-12 | 68.6 |
| LLPS-Leo-2498 | Lepisosteus oculatus | 27.6 | 5e-10 | 63.2 |
| LLPS-Orl-1656 | Oryzias latipes | 27.6 | 3e-10 | 63.9 |
| LLPS-Sus-2325 | Sus scrofa | 27.35 | 4e-13 | 71.6 |
| LLPS-Fud-3875 | Fukomys damarensis | 27.32 | 5e-12 | 68.6 |
| LLPS-Cap-2508 | Cavia porcellus | 27.32 | 5e-12 | 68.6 |
| LLPS-Ora-2212 | Ornithorhynchus anatinus | 27.31 | 8e-13 | 70.1 |
| LLPS-Cii-1123 | Ciona intestinalis | 27.23 | 9e-08 | 56.2 |
| LLPS-Mup-1048 | Mustela putorius furo | 27.14 | 3e-10 | 63.2 |
| LLPS-Anp-2222 | Anas platyrhynchos | 26.95 | 9e-13 | 70.5 |
| LLPS-Aim-0054 | Ailuropoda melanoleuca | 26.81 | 3e-12 | 69.3 |
| LLPS-Fec-1245 | Felis catus | 26.81 | 2e-12 | 69.7 |
| LLPS-Urm-3797 | Ursus maritimus | 26.81 | 2e-12 | 69.7 |
| LLPS-Orc-3015 | Oryctolagus cuniculus | 26.81 | 1e-12 | 69.7 |
| LLPS-Eqc-3475 | Equus caballus | 26.81 | 2e-12 | 70.1 |
| LLPS-Mum-1090 | Mus musculus | 26.8 | 4e-11 | 65.9 |
| LLPS-Sah-1037 | Sarcophilus harrisii | 26.8 | 4e-11 | 64.7 |
| LLPS-Ran-0670 | Rattus norvegicus | 26.8 | 4e-11 | 65.9 |
| LLPS-Mod-1442 | Monodelphis domestica | 26.8 | 1e-10 | 64.7 |
| LLPS-Fuo-1082 | Fusarium oxysporum | 26.72 | 1e-06 | 53.1 |
| LLPS-Pes-3124 | Pelodiscus sinensis | 26.56 | 3e-10 | 63.5 |
| LLPS-Anc-0860 | Anolis carolinensis | 26.45 | 7e-11 | 65.5 |
| LLPS-Tut-1494 | Tursiops truncatus | 26.42 | 4e-07 | 53.5 |
| LLPS-Mea-1518 | Mesocricetus auratus | 26.38 | 4e-12 | 68.9 |
| LLPS-Bot-2566 | Bos taurus | 26.38 | 4e-12 | 68.9 |
| LLPS-Otg-0222 | Otolemur garnettii | 26.38 | 3e-12 | 69.3 |
| LLPS-Caf-0799 | Canis familiaris | 26.38 | 7e-12 | 68.2 |
| LLPS-Ict-0887 | Ictidomys tridecemlineatus | 26.38 | 1e-11 | 67.4 |
| LLPS-Cas-2842 | Carlito syrichta | 26.29 | 1e-10 | 64.7 |
| LLPS-Meg-0381 | Meleagris gallopavo | 26.19 | 2e-12 | 69.7 |
| LLPS-Ova-0798 | Ovis aries | 26.16 | 3e-10 | 63.5 |
| LLPS-Lac-0691 | Latimeria chalumnae | 26.02 | 2e-10 | 63.9 |
| LLPS-Maf-1761 | Macaca fascicularis | 25.79 | 8e-11 | 65.1 |
| LLPS-Aon-0597 | Aotus nancymaae | 25.79 | 6e-11 | 65.5 |
| LLPS-Gog-1239 | Gorilla gorilla | 25.79 | 5e-11 | 65.9 |
| LLPS-Caj-2610 | Callithrix jacchus | 25.79 | 7e-11 | 65.5 |
| LLPS-Hos-1049 | Homo sapiens | 25.79 | 5e-11 | 65.9 |
| LLPS-Pap-3128 | Pan paniscus | 25.79 | 5e-11 | 65.9 |
| LLPS-Pat-2622 | Pan troglodytes | 25.79 | 5e-11 | 65.9 |
| LLPS-Man-0729 | Macaca nemestrina | 25.79 | 8e-11 | 65.1 |
| LLPS-Poa-3810 | Pongo abelii | 25.79 | 3e-11 | 65.5 |
| LLPS-Mam-3371 | Macaca mulatta | 25.79 | 3e-11 | 65.1 |
| LLPS-Nol-2419 | Nomascus leucogenys | 25.79 | 6e-11 | 65.5 |
| LLPS-Cea-2116 | Cercocebus atys | 25.26 | 3e-10 | 63.5 |
| LLPS-Paa-3215 | Papio anubis | 25.26 | 3e-10 | 63.5 |
| LLPS-Mal-1021 | Mandrillus leucophaeus | 25.26 | 3e-10 | 63.5 |
| LLPS-Rhb-2486 | Rhinopithecus bieti | 25.26 | 3e-10 | 63.5 |
| LLPS-Cog-0618 | Colletotrichum gloeosporioides | 24.23 | 6e-06 | 50.8 |